View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10759_low_3 (Length: 427)
Name: NF10759_low_3
Description: NF10759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10759_low_3 |
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| [»] scaffold0182 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 392; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 7 - 418
Target Start/End: Complemental strand, 48024961 - 48024550
Alignment:
| Q |
7 |
caatcttcgggtccaaatcttcctcgtcttcctctacacgacgcacgccgttgactagaaccccttttgctttaagtgaaacgacaaaccgttcatcatc |
106 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
48024961 |
caatcttcggatccaaatcttcctcgtcttcctctacacgacgcacgccgttgactagaaccccttttgctttaagtgaaacgacacaccgttcatcatc |
48024862 |
T |
|
| Q |
107 |
attgtagaatcggaaacgaagtgtggctcgacgagaagagagttcagaggcggcgccgtcgaagaagtggttgtgttgatgatgggtgatgacgtggaag |
206 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48024861 |
attatagaatcggaaacgaagtgtggctcgacgagaagagagttcagaggcggcgccgtcgaagaagtggttgtgttgatgatgggtgatgacgtggaag |
48024762 |
T |
|
| Q |
207 |
ggagagagcaaagcggtgacttggcgatgagcttcggcgtttgcgagacgtagctttacttccacttccatttcggtgcgattaaactgacggaggagag |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48024761 |
ggagagagcaaagcggtgacttggcgatgagcttcggcgtttgcgagacgtagctttacttccacttccatttcggtgcgattaaactgacggaggagag |
48024662 |
T |
|
| Q |
307 |
aagcggcggcggtagcgttgtcacgagctttggatatttggtcaactaatggtaatggaagaaagtaattaaaatccccgcgggaaagttacaatctcaa |
406 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48024661 |
aagccgcggcggtagcgttctcacgagctttggatatttggtcaactaatggtaatggaagaaagtaattaaaatccccgcgggaaagttacaatctcaa |
48024562 |
T |
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| Q |
407 |
catggttcatct |
418 |
Q |
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|||||||||||| |
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| T |
48024561 |
catggttcatct |
48024550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 7 - 282
Target Start/End: Complemental strand, 48020175 - 48019900
Alignment:
| Q |
7 |
caatcttcgggtccaaatcttcctcgtcttcctctacacgacgcacgccgttgactagaaccccttttgctttaagtgaaacgacaaaccgttcatcatc |
106 |
Q |
| |
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|||||||||| |||||||| ||||| ||||| || ||||||| ||| || | || |||||| | |||||||| | ||||| ||| |||||||||| || |
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| T |
48020175 |
caatcttcggatccaaatcctcctcatcttcttcaacacgactcacaccatcaaccagaaccgcctttgctttcaacgaaacaacacaccgttcatcgtc |
48020076 |
T |
|
| Q |
107 |
attgtagaatcggaaacgaagtgtggctcgacgagaagagagttcagaggcggcgccgtcgaagaagtggttgtgttgatgatgggtgatgacgtggaag |
206 |
Q |
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| ||||||||| | ||||| | || ||||||||||||||||| || | ||||||||||||||| | || |||||| |||| ||||| ||||||||| |
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| T |
48020075 |
accgtagaatcgtagccgaagaatagcgcgacgagaagagagttccgatccagcgccgtcgaagaagagattatgttgacgatgagtgataacgtggaag |
48019976 |
T |
|
| Q |
207 |
ggagagagcaaagcggtgacttggcgatgagcttcggcgtttgcgagacgtagctttacttccacttccatttcgg |
282 |
Q |
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||||| ||||||| ||||| || ||| || || ||||||| |||||| ||||| ||||| || ||||| |||| |
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| T |
48019975 |
ggagaaagcaaagtagtgacacggtgataagaatctgcgtttgggagacgaagcttgacttcaacctccatatcgg |
48019900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 7 - 359
Target Start/End: Complemental strand, 51934565 - 51934213
Alignment:
| Q |
7 |
caatcttcgggtccaaatcttcctcgtcttcctctacacgacgcacgccgttgactagaaccccttttgctttaagtgaaacgacaaaccgttcatcatc |
106 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
51934565 |
caatcttcggatccaaatcttcctcgtcttcctctacacaacgcacgccgttgactagaaccccttttgctttaagtgaaacgacacaccgttcatcatc |
51934466 |
T |
|
| Q |
107 |
attgtagaatcggaaacgaagtgtggctcgacgagaagagagttcagaggcggcgccgtcgaagaagtggttgtgttgatgatgggtgatgacgtggaag |
206 |
Q |
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||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51934465 |
attatagaatcaaaaacgaaatgtggctcgacgagaagagagttcagaggcggcgccgtcgaagaagtggttgtgttgatgatgggtgatgacgtggaag |
51934366 |
T |
|
| Q |
207 |
ggagagagcaaagcggtgacttggcgatgagcttcggcgtttgcgagacgtagctttacttccacttccatttcggtgcgattaaactgacggaggagag |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
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| T |
51934365 |
ggagagagcaaagcggtgacttggcgatgagcttcggcgtttgcgagacgtagctttacttccacttccatttcagtgcgattaaactgacagaggagag |
51934266 |
T |
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| Q |
307 |
aagcggcggcggtagcgttgtcacgagctttggatatttggtcaactaatggt |
359 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
51934265 |
aagtggcggcggtagcgttgtcacgagctttggatatttggtcaactcatggt |
51934213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 7 - 228
Target Start/End: Complemental strand, 13735 - 13514
Alignment:
| Q |
7 |
caatcttcgggtccaaatcttcctcgtcttcctctacacgacgcacgccgttgactagaaccccttttgctttaagtgaaacgacaaaccgttcatcatc |
106 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
13735 |
caatcttcggatccaaatcttcctcgtcttcctctacacgacgcacgccgttgactagaaccccttttgctttaagtgaaacgacacaccgttcatcatc |
13636 |
T |
|
| Q |
107 |
attgtagaatcggaaacgaagtgtggctcgacgagaagagagttcagaggcggcgccgtcgaagaagtggttgtgttgatgatgggtgatgacgtggaag |
206 |
Q |
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|||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13635 |
attgtagaatcgaaaacgaaatgtggctcgacgagaagagagttcggaggcggcgccgtcgaagaagtggttgtgttgatgatgggtgatgacgtggaag |
13536 |
T |
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| Q |
207 |
ggagagagcaaagcggtgactt |
228 |
Q |
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|||||||||||||||||||||| |
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| T |
13535 |
ggagagagcaaagcggtgactt |
13514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 264 - 359
Target Start/End: Complemental strand, 13517 - 13422
Alignment:
| Q |
264 |
acttccacttccatttcggtgcgattaaactgacggaggagagaagcggcggcggtagcgttgtcacgagctttggatatttggtcaactaatggt |
359 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
13517 |
acttccacttccatttcggtgcgattaaactgacagaggagagaaacggcggcggtagcgttgtcacgagctttggatatttggtcaactcatggt |
13422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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