View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10759_low_30 (Length: 234)
Name: NF10759_low_30
Description: NF10759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10759_low_30 |
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Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 2918926 - 2918719
Alignment:
| Q |
18 |
gcttattcatgtaccttctgttattcataactaagcaatgattacaaaactcaaaaggaataatggttaataatttcaggaatccccatgagttgcatat |
117 |
Q |
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| T |
2918926 |
gcttattcatgtaccttctgttattcataactaagcaatgattacaaaactcaaaaggaataatggttaataatttcaggaatccccatgagttgcatat |
2918827 |
T |
|
| Q |
118 |
gttgttgaaagtcaaactaatcctaattaacattgtaatgacctaatcatactctaaacctaattgttaggcgccaaactaggataaccggttgatcttt |
217 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2918826 |
gttgttgaaagtcaaactaatcctaattaacattgcaatgacctaatcatactctaaacctaattgttaggcgccaaactaggataaccggttgatcttt |
2918727 |
T |
|
| Q |
218 |
aacctttg |
225 |
Q |
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|||||||| |
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| T |
2918726 |
aacctttg |
2918719 |
T |
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Target: chr2 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 31 - 225
Target Start/End: Complemental strand, 31412857 - 31412673
Alignment:
| Q |
31 |
ccttctgttattcataactaagcaatgattacaaaactcaaaaggaataatggttaataatttcaggaatccccatgagttgcatatg-ttgttgaaagt |
129 |
Q |
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||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
31412857 |
ccttctgttattcataactaagcaatgattaca-----------gagtaatggttattaatttcaggaatccccatgagttgcatatggttgttcaaagt |
31412769 |
T |
|
| Q |
130 |
caaactaatcctaattaacattgtaatgacctaatcatactctaaacctaattgttaggcgccaaactaggataaccggttgatctttaacctttg |
225 |
Q |
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||||||||||||||||||||||| ||||| |||||||||| ||||||||||||| |||||||||||||| |||||||| ||||||||||||||||| |
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| T |
31412768 |
caaactaatcctaattaacattgcaatgatctaatcataccctaaacctaattgctaggcgccaaactacgataaccgtttgatctttaacctttg |
31412673 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 127 - 225
Target Start/End: Original strand, 35858064 - 35858161
Alignment:
| Q |
127 |
agtcaaactaatcctaattaacattgtaatgacctaatcatactctaaacctaattgttaggcgccaaactaggataaccggttgatctttaacctttg |
225 |
Q |
| |
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|||||||||||||||||||||||||| ||| ||||||||| || ||||| |||||||||| |||||||||||||||||||| | |||||||||||||| |
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| T |
35858064 |
agtcaaactaatcctaattaacattgcaattacctaatcaaaccctaaatctaattgtta-gcgccaaactaggataaccgttgaatctttaacctttg |
35858161 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 149 - 225
Target Start/End: Original strand, 45463894 - 45463970
Alignment:
| Q |
149 |
attgtaatgacctaatcatactctaaacctaattgttaggcgccaaactaggataaccggttgatctttaacctttg |
225 |
Q |
| |
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|||||||||||||||||| || ||||| ||||||| |||||||||||||| |||||||| | ||||||||| ||||| |
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| T |
45463894 |
attgtaatgacctaatcaaaccctaaagctaattgctaggcgccaaactatgataaccgttggatctttaatctttg |
45463970 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 134 - 225
Target Start/End: Complemental strand, 38612038 - 38611946
Alignment:
| Q |
134 |
ctaatcctaattaacattgtaatgacctaatcatactctaaacctaatt-gttaggcgccaaactaggataaccggttgatctttaacctttg |
225 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||| |||||||||||| ||||||| ||||||| ||||| | | ||||||||||||||| |
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| T |
38612038 |
ctaatcctaattaacattgcaatgacctaaccataccctaaacctaattatttaggcgtcaaactatgataaatgttggatctttaacctttg |
38611946 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 225
Target Start/End: Original strand, 2952918 - 2953010
Alignment:
| Q |
134 |
ctaatcctaattaacattgtaatgacctaatcatactctaaacctaatt-gttaggcgccaaactaggataaccggttgatctttaacctttg |
225 |
Q |
| |
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||||||||||||||||||| ||||||| || ||||| |||||||||||| ||||||||||||||| ||||| | | |||| |||||||||| |
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| T |
2952918 |
ctaatcctaattaacattgcaatgaccgaaacataccctaaacctaattatttaggcgccaaactatgataaatgttggatcattaacctttg |
2953010 |
T |
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