View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10759_low_31 (Length: 233)

Name: NF10759_low_31
Description: NF10759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10759_low_31
NF10759_low_31
[»] chr2 (12 HSPs)
chr2 (48-221)||(6915147-6915320)
chr2 (57-113)||(10492777-10492833)
chr2 (56-108)||(28105350-28105402)
chr2 (50-113)||(10463585-10463648)
chr2 (50-97)||(10507349-10507396)
chr2 (62-113)||(10860707-10860758)
chr2 (51-113)||(10474161-10474223)
chr2 (57-113)||(7476566-7476622)
chr2 (62-113)||(10848803-10848854)
chr2 (159-214)||(10863465-10863520)
chr2 (56-113)||(7478731-7478788)
chr2 (159-219)||(10545637-10545697)
[»] chr7 (2 HSPs)
chr7 (48-117)||(15045572-15045641)
chr7 (144-220)||(15047553-15047629)
[»] chr8 (1 HSPs)
chr8 (61-112)||(44307022-44307073)


Alignment Details
Target: chr2 (Bit Score: 170; Significance: 2e-91; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 48 - 221
Target Start/End: Complemental strand, 6915320 - 6915147
Alignment:
Q  48 tttttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgctccctcaaggtcagcagctgaaatgttctcatcat 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6915320 tttttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgctccctcaaggtcagcagctgaaatgttctcatcat 6915221  T
Q  148 cgctaagaaacgcttcagcaagtacatcatctacctctgacacagtttctatgagttcacgtcttttctctgct 221  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6915220 cactaagaaacgcttcagcaagtacatcatctacctctgacacagtttctatgagttcacgtcttttctctgct 6915147  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 57 - 113
Target Start/End: Original strand, 10492777 - 10492833
Alignment:
Q  57 gcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 113  Q
    |||||||||||||| ||||||| ||||||  |||||||||| |||||||||||||||    
T  10492777 gcactacccatgaaaaccggtacaaatttatgtgctatggttgccctacgaattgct 10492833  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 28105402 - 28105350
Alignment:
Q  56 agcactacccatgaataccggtataaatttccgtgctatggtagccctacgaa 108  Q
    |||| ||||||||||||| |||||||| |||||||||||||| ||||||||||    
T  28105402 agcattacccatgaatactggtataaacttccgtgctatggtggccctacgaa 28105350  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 113
Target Start/End: Original strand, 10463585 - 10463648
Alignment:
Q  50 tttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 113  Q
    ||||| ||||||||||||||| |  |||||||||||||||||||| || || ||||||||||||    
T  10463585 tttgaaagcactacccatgaaaaatggtataaatttccgtgctatcgtggctctacgaattgct 10463648  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 97
Target Start/End: Original strand, 10507349 - 10507396
Alignment:
Q  50 tttgacagcactacccatgaataccggtataaatttccgtgctatggt 97  Q
    ||||| |||||| ||||||||||| |||||||||||||||||||||||    
T  10507349 tttgaaagcactgcccatgaatacgggtataaatttccgtgctatggt 10507396  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 113
Target Start/End: Original strand, 10860707 - 10860758
Alignment:
Q  62 acccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 113  Q
    |||||||||||| |||||||||||||||||||||||  ||||||||| ||||    
T  10860707 acccatgaatactggtataaatttccgtgctatggtgaccctacgaactgct 10860758  T

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Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 51 - 113
Target Start/End: Original strand, 10474161 - 10474223
Alignment:
Q  51 ttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 113  Q
    |||| |||||| ||||||||||  |||||||| |||||||||||||| |||||||||| ||||    
T  10474161 ttgaaagcactgcccatgaatattggtataaacttccgtgctatggtggccctacgaactgct 10474223  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 113
Target Start/End: Complemental strand, 7476622 - 7476566
Alignment:
Q  57 gcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 113  Q
    |||||||||||||| ||||||| ||||||| ||||||| || |||||| ||||||||    
T  7476622 gcactacccatgaaaaccggtacaaatttctgtgctatagttgccctatgaattgct 7476566  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 113
Target Start/End: Original strand, 10848803 - 10848854
Alignment:
Q  62 acccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 113  Q
    |||||||||||| |||||||||||  |||||||||| |||||||||| ||||    
T  10848803 acccatgaatactggtataaatttgtgtgctatggtggccctacgaactgct 10848854  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 214
Target Start/End: Original strand, 10863465 - 10863520
Alignment:
Q  159 gcttcagcaagtacatcatctacctctgacacagtttctatgagttcacgtctttt 214  Q
    ||||||||||||  |||||| ||||||||||| ||||||||||||||  |||||||    
T  10863465 gcttcagcaagtttatcatccacctctgacacggtttctatgagttcctgtctttt 10863520  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 113
Target Start/End: Complemental strand, 7478788 - 7478731
Alignment:
Q  56 agcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 113  Q
    |||||| |||||||| |||||||||||||| |||||| |||| |||||| ||| ||||    
T  7478788 agcactgcccatgaagaccggtataaatttgcgtgctctggttgccctaagaactgct 7478731  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 10545637 - 10545697
Alignment:
Q  159 gcttcagcaagtacatcatctacctctgacacagtttctatgagttcacgtcttttctctg 219  Q
    ||||||||||||  ||| ||||||||||| ||||||| |||||||||| | ||||| ||||    
T  10545637 gcttcagcaagtttatcgtctacctctgatacagtttttatgagttcatgccttttttctg 10545697  T

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Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 48 - 117
Target Start/End: Original strand, 15045572 - 15045641
Alignment:
Q  48 tttttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgctccct 117  Q
    ||||||| ||||||||||||||||||||||||||||||||| || | ||||||||||||||| |||||||    
T  15045572 tttttgaaagcactacccatgaataccggtataaatttccgcgccacggtagccctacgaatggctccct 15045641  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 144 - 220
Target Start/End: Original strand, 15047553 - 15047629
Alignment:
Q  144 tcatcgctaagaaacgcttcagcaagtacatcatctacctctgacacagtttctatgagttcacgtcttttctctgc 220  Q
    ||||| |||||||||||||| ||||||| |||||| |||||||||||||||||||| |||||| ||||||| |||||    
T  15047553 tcatcactaagaaacgcttccgcaagtatatcatcaacctctgacacagtttctattagttcatgtcttttttctgc 15047629  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 112
Target Start/End: Original strand, 44307022 - 44307073
Alignment:
Q  61 tacccatgaataccggtataaatttccgtgctatggtagccctacgaattgc 112  Q
    |||||||||| |  |||| |||||||||||||||||| ||||||||||||||    
T  44307022 tacccatgaaaattggtacaaatttccgtgctatggttgccctacgaattgc 44307073  T

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