View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10759_low_33 (Length: 231)

Name: NF10759_low_33
Description: NF10759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10759_low_33
NF10759_low_33
[»] chr3 (2 HSPs)
chr3 (17-215)||(31221812-31222010)
chr3 (120-213)||(31246306-31246399)
[»] chr5 (1 HSPs)
chr5 (122-201)||(34933739-34933818)
[»] chr2 (1 HSPs)
chr2 (81-126)||(18252387-18252432)


Alignment Details
Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 17 - 215
Target Start/End: Original strand, 31221812 - 31222010
Alignment:
Q  17 agagctcacaacaacaacaacaaagtagttattattatgtcacaactaatcacacaaatccattacacacctaattaagagacaatgttaatttgagaat 116  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||    
T  31221812 agagctcacaacaacaacaacaaagtaattattattatgtcacaactaatcacacaaatccattacacacctaattaagaaacaatgttaatttgacaat 31221911  T
Q  117 gcagaacttacttgttacccttgaccttaaaccaagcttcagcacattgtttatgggcagcagccaaatcatctttacaagaacatcctagttcaatag 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  31221912 gcagaacttacttgttacccttgaccttaaaccaagcttcagcacattgtttatgggcagcagccaaatcatctttacaggaacatcctagttcaatag 31222010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 120 - 213
Target Start/End: Original strand, 31246306 - 31246399
Alignment:
Q  120 gaacttacttgttacccttgaccttaaaccaagcttcagcacattgtttatgggcagcagccaaatcatctttacaagaacatcctagttcaat 213  Q
    ||||||||||||||||||||| | | |||||  ||||||||||| ||||||| |||| || ||  ||||||||||| |||||||||||||||||    
T  31246306 gaacttacttgttacccttgatcctgaaccattcttcagcacatagtttatgagcagtagacatgtcatctttacaggaacatcctagttcaat 31246399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 201
Target Start/End: Original strand, 34933739 - 34933818
Alignment:
Q  122 acttacttgttacccttgaccttaaaccaagcttcagcacattgtttatgggcagcagccaaatcatctttacaagaaca 201  Q
    ||||||||||| || || | ||| |||||||| |||||||| || ||||| |||||||||||||||| ||| ||| ||||    
T  34933739 acttacttgttgcctttaatcttgaaccaagcctcagcacaatgcttatgagcagcagccaaatcatttttgcaaaaaca 34933818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 126
Target Start/End: Original strand, 18252387 - 18252432
Alignment:
Q  81 acacacctaattaagagacaatgttaatttgagaatgcagaactta 126  Q
    |||||||||||||||| |||||||| |||||| | |||||||||||    
T  18252387 acacacctaattaagaaacaatgtttatttgacattgcagaactta 18252432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University