View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10759_low_4 (Length: 420)
Name: NF10759_low_4
Description: NF10759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10759_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 11 - 406
Target Start/End: Original strand, 5474385 - 5474780
Alignment:
| Q |
11 |
caaagggtaaaactatcattcatccaaatgataccgacaaaaatgtttaagtgttttaagtgtcaagaccaaggacatattgcatctaaatatccaatta |
110 |
Q |
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| T |
5474385 |
caaaaggtaaaactatcattcatccaaatgataccgacaaaaatgtttaagtgttttaagtgtcaagaccaaggacatattgcatctaaatatctaatta |
5474484 |
T |
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| Q |
111 |
agagaactatgcttgttgaggaaaatgaaatggaggaacgaggatgaaattgaagtagaataagtaccgtaatggaaaatttctcacggtgataatgata |
210 |
Q |
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| T |
5474485 |
agagaactatgcttgttgaggaaaatgaaatggaggaacgaggatgaaattgaagtagaataagtaccgtaatggaaaatttctcacggtgataaggata |
5474584 |
T |
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| Q |
211 |
cgggaaagcatataaaaaagaggatacaattcaaagaaaaaacattttctcatacaaggtgttcagtgaaagtttatgtcactttattttcaaaactgtt |
310 |
Q |
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| T |
5474585 |
cgggaaagcatataaaaaacaggatacaattcaaagaaaaaacattctctcatacaaggtgtttagtgaaagtt--tgtcactttattttcaaaactgtt |
5474682 |
T |
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| Q |
311 |
tagatcctccattgtaagaaacacaa--nnnnnnnnnccgttcatattggaaactaccttgaaacaagcagaatgaaactgctagtagcattgttatt |
406 |
Q |
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| T |
5474683 |
tagatcctccattgtaagaaacacaatttttgtttttccgttcatattgaaaactaccttgaaacaagcagaatgaaactgctagtagcattgttatt |
5474780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 62 - 139
Target Start/End: Complemental strand, 13961022 - 13960945
Alignment:
| Q |
62 |
tgttttaagtgtcaagaccaaggacatattgcatctaaatatccaattaagagaactatgcttgttgaggaaaatgaa |
139 |
Q |
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| T |
13961022 |
tgtttcaagtgtcaaggcaaagggcatattgcatctgaatgtccaacaaagagaactatgcttgtggaggaaaatgaa |
13960945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 139
Target Start/End: Original strand, 15383704 - 15383781
Alignment:
| Q |
62 |
tgttttaagtgtcaagaccaaggacatattgcatctaaatatccaattaagagaactatgcttgttgaggaaaatgaa |
139 |
Q |
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| T |
15383704 |
tgtttcaagtgtcaaggcaaagggcatagtgcatctgaatgtccaacaaagagaactatgcttgtggaggaaaatgaa |
15383781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 62 - 129
Target Start/End: Complemental strand, 12366066 - 12365999
Alignment:
| Q |
62 |
tgttttaagtgtcaagaccaaggacatattgcatctaaatatccaattaagagaactatgcttgttga |
129 |
Q |
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| T |
12366066 |
tgttttaagtgtcaaggtcaagggcatattgcatctcaatgtcctacaaagagaactatgcttattga |
12365999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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