View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10759_low_41 (Length: 218)

Name: NF10759_low_41
Description: NF10759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10759_low_41
NF10759_low_41
[»] chr1 (7 HSPs)
chr1 (1-202)||(46621429-46621630)
chr1 (9-202)||(46627163-46627363)
chr1 (2-156)||(15800373-15800527)
chr1 (6-67)||(15828335-15828396)
chr1 (3-56)||(15829958-15830011)
chr1 (3-56)||(15831686-15831739)
chr1 (3-56)||(15833413-15833466)
[»] chr7 (1 HSPs)
chr7 (1-191)||(37147519-37147709)
[»] chr5 (8 HSPs)
chr5 (1-137)||(22654244-22654380)
chr5 (1-137)||(37328118-37328254)
chr5 (77-192)||(39174088-39174203)
chr5 (2-146)||(38848834-38848978)
chr5 (2-137)||(38807461-38807596)
chr5 (2-146)||(38865820-38865964)
chr5 (2-55)||(39310566-39310619)
chr5 (2-55)||(38750215-38750268)
[»] scaffold0496 (1 HSPs)
scaffold0496 (94-146)||(12299-12351)
[»] scaffold0754 (1 HSPs)
scaffold0754 (3-56)||(3912-3965)
[»] scaffold0563 (1 HSPs)
scaffold0563 (3-56)||(10444-10497)
[»] scaffold0492 (1 HSPs)
scaffold0492 (3-56)||(804-857)


Alignment Details
Target: chr1 (Bit Score: 166; Significance: 5e-89; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 46621429 - 46621630
Alignment:
Q  1 tatccctccactgtcaagagccggaggtgtttgctgctctgtgaaaccagcctcacacagtgccctccagtctaagaccaaggagactcaagccttcgcc 100  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  46621429 tatccctccactgtcaagagacggaggtgtttgctgctctgtgaaaccagcctcacacagtgccctccagtctaggaccaaggagactcaagccttcgcc 46621528  T
Q  101 taggtcccattggccaactctcaacttggagcgggcaggccggcatggtgcagccaccaatccaacctagctaatcctaagccatgttccatcaccttca 200  Q
    |||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||| || |||| |||||||||||||||||||||||    
T  46621529 taggtcacattggccaactctcaacttggagtgggcaggccagcatggtgcagccaccaacccaacctggcaaatcttaagccatgttccatcaccttca 46621628  T
Q  201 tg 202  Q
    ||    
T  46621629 tg 46621630  T

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Target: chr1; HSP #2
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 9 - 202
Target Start/End: Original strand, 46627163 - 46627363
Alignment:
Q  9 cactgtcaagagccggaggtgtttgctgctctgtgaaaccagcctcacacagtgccctccagtctaag------accaaggagactcaagccttcgccta 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |      ||||||||||||||||||||||||||    
T  46627163 cactgtcaagagccggaggtgtttgctgctctgtgaaaccagcctcacacagtgccctccagtctaggtctaggaccaaggagactcaagccttcgccta 46627262  T
Q  103 ggtcccattggcc-aactctcaacttggagcgggcaggccggcatggtgcagccaccaatccaacctagctaatcctaagccatgttccatcaccttcat 201  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||    
T  46627263 ggtcccattggcccaactctcaacttggagcgggcaggccggcatggtgcagccaccaacccaacctggcaaatcctaagccatgttccatcaccttcat 46627362  T
Q  202 g 202  Q
    |    
T  46627363 g 46627363  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 156
Target Start/End: Original strand, 15800373 - 15800527
Alignment:
Q  2 atccctccactgtcaagagccggaggtgtttgctgctctgtgaaaccagcctcacacagtgccctccagtctaagaccaaggagactcaagccttcgcct 101  Q
    ||||||||||||||| ||||| ||||| || |||||||||||||||||||||||| |  | |||||  ||||| || | | |||||  | ||||||||      
T  15800373 atccctccactgtcaggagccagaggtattcgctgctctgtgaaaccagcctcacgccattccctctcgtctaggaaccaagagacataggccttcgcac 15800472  T
Q  102 aggtcccattggccaactctcaacttggagcgggcaggccggcatggtgcagcca 156  Q
    | ||||| | | |||||||||||||||||||||||||||| ||||  ||||||||    
T  15800473 aagtcccgtggaccaactctcaacttggagcgggcaggccagcatattgcagcca 15800527  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 67
Target Start/End: Original strand, 15828335 - 15828396
Alignment:
Q  6 ctccactgtcaagagccggaggtgtttgctgctctgtgaaaccagcctcacacagtgccctc 67  Q
    ||||||||||| ||||  ||||| || |||||| |||||||||||||||||||| |||||||    
T  15828335 ctccactgtcaggagctagaggtattcgctgctttgtgaaaccagcctcacacattgccctc 15828396  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 15829958 - 15830011
Alignment:
Q  3 tccctccactgtcaagagccggaggtgtttgctgctctgtgaaaccagcctcac 56  Q
    ||||||||||||   ||||| ||||| || ||||||||||||||||||||||||    
T  15829958 tccctccactgttgggagccagaggtattcgctgctctgtgaaaccagcctcac 15830011  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 15831686 - 15831739
Alignment:
Q  3 tccctccactgtcaagagccggaggtgtttgctgctctgtgaaaccagcctcac 56  Q
    ||||||||||||   ||||| ||||| || ||||||||||||||||||||||||    
T  15831686 tccctccactgttgggagccagaggtattcgctgctctgtgaaaccagcctcac 15831739  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 15833413 - 15833466
Alignment:
Q  3 tccctccactgtcaagagccggaggtgtttgctgctctgtgaaaccagcctcac 56  Q
    ||||||||||||   ||||| ||||| || ||||||||||||||||||||||||    
T  15833413 tccctccactgttgggagccagaggtattcgctgctctgtgaaaccagcctcac 15833466  T

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Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 37147709 - 37147519
Alignment:
Q  1 tatccctccactgtcaagagccggaggtgtttgctgctctgtgaaaccagcctcacacagtgccctccagtctaagaccaaggagactcaagccttcgcc 100  Q
    |||||||||||||||||||| |||  ||  | ||||||||||||| |||||||||| |||||||| |||||||| |||||||||||||||||||||||||    
T  37147709 tatccctccactgtcaagaggcggcagtactcgctgctctgtgaagccagcctcacgcagtgcccgccagtctaggaccaaggagactcaagccttcgcc 37147610  T
Q  101 taggtcccattggccaactctcaacttggagcgggcaggccggcatggtgcagccaccaatccaacctagctaatcctaagccatgttcca 191  Q
    ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| || ||||||| || |||||||||||||||||||    
T  37147609 taggtcccattggccaactctcaacttggagtgggcaggccagcatggtgcagccactaacccaacctggcaaatcctaagccatgttcca 37147519  T

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Target: chr5 (Bit Score: 53; Significance: 1e-21; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 22654380 - 22654244
Alignment:
Q  1 tatccctccactgtcaagagccggaggtgtttgctgctctgtgaaaccagcctcacacagtgccctccagtctaagaccaaggagactcaagccttcgcc 100  Q
    |||||||||||| ||||||||| ||||| || |||||| |||||||||||||||||||||||||||  | |||| || | | |||||  | |||||||||    
T  22654380 tatccctccactatcaagagccagaggtattcgctgctatgtgaaaccagcctcacacagtgccctttaatctaggaaccaagagaccaaggccttcgcc 22654281  T
Q  101 taggtcccattggccaactctcaacttggagcgggca 137  Q
     |  |||| | | ||||||||||||||||||||||||    
T  22654280 caaatcccgtggcccaactctcaacttggagcgggca 22654244  T

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Target: chr5; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 37328118 - 37328254
Alignment:
Q  1 tatccctccactgtcaagagccggaggtgtttgctgctctgtgaaaccagcctcacacagtgccctccagtctaagaccaaggagactcaagccttcgcc 100  Q
    |||||||||||||||||||||| ||||| || ||||||||| |||||||||||||| ||||||||||  ||||| || | | |||||  | |||||||||    
T  37328118 tatccctccactgtcaagagccagaggtcttcgctgctctgcgaaaccagcctcacgcagtgccctctcgtctaggaaccaagagaccaaggccttcgcc 37328217  T
Q  101 taggtcccattggccaactctcaacttggagcgggca 137  Q
     |  |||| | | |||||||||||||||||| |||||    
T  37328218 caaatcccgtggcccaactctcaacttggagagggca 37328254  T

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Target: chr5; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 77 - 192
Target Start/End: Original strand, 39174088 - 39174203
Alignment:
Q  77 accaaggagactcaagccttcgcctaggtcccattggccaactctcaacttggagcgggcaggccggcatggtgcagccaccaatccaacctagctaatc 176  Q
    ||||||||||||| || ||||||||||||||  ||||||||||||||||||| || || |||||| | |||||||||| | ||| ||||| | || |||     
T  39174088 accaaggagactcgagtcttcgcctaggtccttttggccaactctcaacttgaagtggacaggccagtatggtgcagctatcaacccaacttggcaaatt 39174187  T
Q  177 ctaagccatgttccat 192  Q
    ||||||||| ||||||    
T  39174188 ctaagccattttccat 39174203  T

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Target: chr5; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 2 - 146
Target Start/End: Original strand, 38848834 - 38848978
Alignment:
Q  2 atccctccactgtcaagagccggaggtgtttgctgctctgtgaaaccagcctcacacagtgccctccagtctaagaccaaggagactcaagccttcgcct 101  Q
    |||||||||||||||||||  ||| |||||  ||||||||||||||||||||||  | |  ||||||| |||| |  | ||||||     |||||||||     
T  38848834 atccctccactgtcaagagaaggaagtgttcactgctctgtgaaaccagcctcatgcggatccctccattctagggaccaggagatctgtgccttcgcca 38848933  T
Q  102 aggtcccattggccaactctcaacttggagcgggcaggccggcat 146  Q
    || |||||| | |||||||||||||||||||||||||||| ||||    
T  38848934 agatcccatggcccaactctcaacttggagcgggcaggccagcat 38848978  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 137
Target Start/End: Complemental strand, 38807596 - 38807461
Alignment:
Q  2 atccctccactgtcaagagccggaggtgtttgctgctctgtgaaaccagcctcacacagtgccctccagtctaagaccaaggagactcaagccttcgcct 101  Q
    |||||||||||||| ||||  ||| |||||  ||||||||||||||||||||||  | || ||||||  |||| |  | |||||||   ||||||||||     
T  38807596 atccctccactgtcgagagaaggaagtgttcactgctctgtgaaaccagcctcatgcggttccctccgttctagggaccaggagacctgagccttcgccc 38807497  T
Q  102 aggtcccattggccaactctcaacttggagcgggca 137  Q
    |  |||||| | |||||||||||||||||| |||||    
T  38807496 aaatcccatggcccaactctcaacttggagtgggca 38807461  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 146
Target Start/End: Original strand, 38865820 - 38865964
Alignment:
Q  2 atccctccactgtcaagagccggaggtgtttgctgctctgtgaaaccagcctcacacagtgccctccagtcta-agaccaaggagactcaagccttcgcc 100  Q
    |||||||||||||||||||  ||| |||||  ||||||||| ||||||||||||  | |  ||||||| ||||  |||| ||||||    ||||||||||    
T  38865820 atccctccactgtcaagagaaggaagtgttcactgctctgtaaaaccagcctcatgcggatccctccattctagtgacc-aggagatctgagccttcgcc 38865918  T
Q  101 taggtcccattggccaactctcaacttggagcgggcaggccggcat 146  Q
     |  |||||| | |||||||||||||||||| ||||||||| ||||    
T  38865919 caaatcccatggcccaactctcaacttggagtgggcaggccagcat 38865964  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 39310566 - 39310619
Alignment:
Q  2 atccctccactgtcaagagccggaggtgtttgctgctctgtgaaaccagcctca 55  Q
    |||||||||||||||||||  ||| |||||  ||||||||||||||||||||||    
T  39310566 atccctccactgtcaagagaaggaagtgttcactgctctgtgaaaccagcctca 39310619  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 38750268 - 38750215
Alignment:
Q  2 atccctccactgtcaagagccggaggtgtttgctgctctgtgaaaccagcctca 55  Q
    |||||||||||||||||||  ||| ||| |  ||||||||||||||||||||||    
T  38750268 atccctccactgtcaagagaaggaagtgatcactgctctgtgaaaccagcctca 38750215  T

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Target: scaffold0496 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0496
Description:

Target: scaffold0496; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 94 - 146
Target Start/End: Original strand, 12299 - 12351
Alignment:
Q  94 cttcgcctaggtcccattggccaactctcaacttggagcgggcaggccggcat 146  Q
    ||||||||||||||||||| |||||||||||||||||| || |||||| ||||    
T  12299 cttcgcctaggtcccattgaccaactctcaacttggagtggtcaggccagcat 12351  T

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Target: scaffold0754 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0754
Description:

Target: scaffold0754; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 3965 - 3912
Alignment:
Q  3 tccctccactgtcaagagccggaggtgtttgctgctctgtgaaaccagcctcac 56  Q
    ||||||||||||   ||||| ||||| || ||||||||||||||||||||||||    
T  3965 tccctccactgttgggagccagaggtattcgctgctctgtgaaaccagcctcac 3912  T

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Target: scaffold0563 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0563
Description:

Target: scaffold0563; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 10497 - 10444
Alignment:
Q  3 tccctccactgtcaagagccggaggtgtttgctgctctgtgaaaccagcctcac 56  Q
    ||||||||||||   ||||| ||||| || ||||||||||||||||||||||||    
T  10497 tccctccactgttgggagccagaggtattcgctgctctgtgaaaccagcctcac 10444  T

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Target: scaffold0492 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0492
Description:

Target: scaffold0492; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 857 - 804
Alignment:
Q  3 tccctccactgtcaagagccggaggtgtttgctgctctgtgaaaccagcctcac 56  Q
    ||||||||||||   ||||| ||||| || ||||||||||||||||||||||||    
T  857 tccctccactgttgggagccagaggtattcgctgctctgtgaaaccagcctcac 804  T

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