View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10759_low_44 (Length: 203)
Name: NF10759_low_44
Description: NF10759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10759_low_44 |
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Alignment Details
Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 16 - 184
Target Start/End: Original strand, 10243496 - 10243664
Alignment:
| Q |
16 |
atgaaagaaatgttgatagttggaatggcatgtttatgggttaattgcgtgcagaatgatttgtacaagtttgtgtatcatatggaaactgaagtgctac |
115 |
Q |
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| T |
10243496 |
atgaaagaaatgttgatagttggaatggcatgtttatgggttaattacatgcagaatgatttgtacaagtttgtgtatcatatggaaactgaagtgctac |
10243595 |
T |
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| Q |
116 |
cacatgaatcactacttgaaaaattaagaattgctttgtggcatttctaccttttcaatcatgaactaa |
184 |
Q |
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| T |
10243596 |
cacatgaatcactacttgaaaaattaagaattgctttgtggcagttctaccttttcaatcatgaactaa |
10243664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 18 - 184
Target Start/End: Original strand, 10233019 - 10233180
Alignment:
| Q |
18 |
gaaagaaatgtt-gatagttggaatggcatgtttatgggttaattgcgtgcagaatgatttgtacaagtttgtgtatcatatggaaactgaagtgctacc |
116 |
Q |
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| T |
10233019 |
gaaagaaatgtttgatagttggaaagccatgtctatgggtta----catgcagaatggtttgtacaagtttgagtatcatatggcagctggagtgctac- |
10233113 |
T |
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| Q |
117 |
acatgaatcactacttgaaaaattaagaattgctttgtggcatttctaccttttcaatcatgaactaa |
184 |
Q |
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| T |
10233114 |
acatgaatcactacttgaaaaattaagaattgc-ttgtggtagttctaccttttcaaccatgaactaa |
10233180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 184
Target Start/End: Original strand, 10224858 - 10224926
Alignment:
| Q |
115 |
ccacatgaatcactacttgaaaaattaagaattgctttgtggcatttctaccttttcaatcatgaactaa |
184 |
Q |
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| T |
10224858 |
ccacatgaaccactgcttgaaaaactaagaattgc-ttgtggcagttctaacttttcaagcatgaactaa |
10224926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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