View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10759_low_5 (Length: 398)

Name: NF10759_low_5
Description: NF10759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10759_low_5
NF10759_low_5
[»] chr7 (11 HSPs)
chr7 (165-383)||(2368355-2368574)
chr7 (57-377)||(44225812-44226136)
chr7 (198-376)||(10526125-10526310)
chr7 (251-377)||(23943255-23943381)
chr7 (129-206)||(10526761-10526838)
chr7 (77-216)||(29248784-29248924)
chr7 (15-108)||(24503823-24503915)
chr7 (57-198)||(23943077-23943219)
chr7 (179-244)||(12869382-12869447)
chr7 (47-136)||(26153554-26153643)
chr7 (147-199)||(26153860-26153912)
[»] chr5 (10 HSPs)
chr5 (15-383)||(26505931-26506306)
chr5 (15-383)||(17344239-17344605)
chr5 (57-377)||(38739917-38740246)
chr5 (59-377)||(35049161-35049488)
chr5 (57-377)||(20883356-20883685)
chr5 (57-235)||(6374702-6374881)
chr5 (59-239)||(16109409-16109590)
chr5 (147-240)||(8736342-8736435)
chr5 (25-237)||(33937047-33937259)
chr5 (147-200)||(28196967-28197020)
[»] chr1 (9 HSPs)
chr1 (57-377)||(25818508-25818836)
chr1 (57-377)||(1180845-1181175)
chr1 (15-295)||(7318217-7318504)
chr1 (57-377)||(30703439-30703768)
chr1 (59-287)||(12067398-12067634)
chr1 (30-251)||(23942989-23943211)
chr1 (172-238)||(38810276-38810342)
chr1 (251-367)||(36185750-36185866)
chr1 (297-377)||(23943242-23943322)
[»] chr6 (2 HSPs)
chr6 (57-377)||(1031070-1031399)
chr6 (121-208)||(7648080-7648167)
[»] chr4 (10 HSPs)
chr4 (90-373)||(1938734-1939026)
chr4 (71-377)||(156482-156797)
chr4 (84-376)||(50334452-50334759)
chr4 (57-205)||(50006869-50007018)
chr4 (22-377)||(18486390-18486749)
chr4 (77-239)||(41784773-41784936)
chr4 (299-382)||(41784983-41785066)
chr4 (299-377)||(41420220-41420298)
chr4 (147-240)||(18777753-18777844)
chr4 (251-304)||(5534062-5534115)
[»] chr8 (12 HSPs)
chr8 (129-376)||(33228392-33228646)
chr8 (30-377)||(5015822-5016177)
chr8 (25-237)||(15892979-15893188)
chr8 (251-377)||(5075804-5075930)
chr8 (147-244)||(4472746-4472843)
chr8 (47-190)||(24619111-24619254)
chr8 (71-216)||(30944788-30944934)
chr8 (268-377)||(22675458-22675567)
chr8 (300-377)||(41601209-41601286)
chr8 (147-232)||(29671294-29671379)
chr8 (147-203)||(27187760-27187816)
chr8 (22-106)||(32076265-32076348)
[»] chr2 (9 HSPs)
chr2 (15-239)||(35004162-35004386)
chr2 (57-357)||(19379557-19379866)
chr2 (22-377)||(26224520-26224882)
chr2 (57-251)||(22728340-22728535)
chr2 (22-377)||(9827065-9827427)
chr2 (85-239)||(28758867-28759022)
chr2 (147-208)||(36342451-36342512)
chr2 (281-343)||(35004416-35004478)
chr2 (325-373)||(22728256-22728304)
[»] chr3 (5 HSPs)
chr3 (57-239)||(20514167-20514350)
chr3 (63-317)||(27934175-27934437)
chr3 (251-377)||(54336304-54336430)
chr3 (147-240)||(30531251-30531344)
chr3 (30-273)||(53768197-53768448)
[»] scaffold0015 (1 HSPs)
scaffold0015 (22-367)||(32916-33269)
[»] scaffold0070 (1 HSPs)
scaffold0070 (147-244)||(45704-45801)


Alignment Details
Target: chr7 (Bit Score: 172; Significance: 3e-92; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 165 - 383
Target Start/End: Complemental strand, 2368574 - 2368355
Alignment:
Q  165 ttacatatttatgtccgatccattgaaatgtaatatttattaacttgtaatatcgtaatttgttcgaatttgtgttcatattgttgatgaatttgtgttt 264  Q
    ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  2368574 ttacatatttatgtccgatccattgaaatataatatttattaacatgtaatatcgtaatttgttcgaatttgtgttcgtattgttgatgaatttttgttt 2368475  T
Q  265 atgtaatttaacaataaatttggttaatttttaccgtttaggtaagattatgtaa-ttttcgaaatgtatggataaattgatgtaatttagatcatttac 363  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| | |||||||||||||||||||| |||||    
T  2368474 atgtaatttaacaataaatttggttaatttttaccgtttaggtaagattatgtaatttttcaaaatgtatgaaaaaattgatgtaatttagatcgtttac 2368375  T
Q  364 gtgttattaagtgtaattaa 383  Q
     ||| |||||||||||||||    
T  2368374 atgtcattaagtgtaattaa 2368355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 57 - 377
Target Start/End: Original strand, 44225812 - 44226136
Alignment:
Q  57 gggggaggataagaaagagaacttttagaagatcgtgtattttccacaacttgtcgaagaagat-gcgacgatgattacatgtttcacgtgatggttgaa 155  Q
    ||||||||||||| ||||| ||  || ||||| |||||||||||||||||| ||| |||| ||| | |||| |||||||||||||| |||||||||||||    
T  44225812 gggggaggataaggaagaggaccgttggaagaccgtgtattttccacaactagtcaaagatgatagtgacgttgattacatgtttcgcgtgatggttgaa 44225911  T
Q  156 aataacactttacatatttatgtccgatccattgaaatgtaatatttattaac-ttgtaatatcgtaat-ttgttcgaatttgtgttcatattgttg--- 250  Q
    ||||||  ||||||| |||||||||||||| ||||| |||||||||||||||| ||||      ||||| || | ||||||||||| | ||||||||       
T  44225912 aataaccttttacatctttatgtccgatccgttgaagtgtaatatttattaacgttgt------gtaatgttttccgaatttgtgtccgtattgttgaat 44226005  T
Q  251 ----atgaatttgtgtttatgtaatttaacaataaatttggttaatttttaccgtttaggtaagattatgtaattttcgaaatgtatggataaattgatg 346  Q
        ||||||||||||| ||||||||||||  | ||||||| ||||||| |||||||| || ||||||||| ||||| ||||| |||| | |||||  ||    
T  44226006 tttaatgaatttgtgttgatgtaatttaacgtttaatttgggtaattttgaccgtttatgtgagattatgtgattttagaaatttatgtacaaatttctg 44226105  T
Q  347 taatttagatcatttacgtgttattaagtgt 377  Q
    |||||| |||| ||||||||| |||||||||    
T  44226106 taatttggatcgtttacgtgtcattaagtgt 44226136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 198 - 376
Target Start/End: Complemental strand, 10526310 - 10526125
Alignment:
Q  198 tatttattaacttgtaatatcgtaatttgttcgaatttgtgttcatattgttga-------tgaatttgtgtttatgtaatttaacaataaatttggtta 290  Q
    ||||||||||| | ||||||||||||||| ||||||||||||   |||| ||||       ||||||||||||||||||||||||| || ||||||| ||    
T  10526310 tatttattaacgtttaatatcgtaatttgatcgaatttgtgtctgtattattgaattttaatgaatttgtgtttatgtaatttaacgatgaatttgggta 10526211  T
Q  291 atttttaccgtttaggtaagattatgtaattttcgaaatgtatggataaattgatgtaatttagatcatttacgtgttattaagtg 376  Q
    |||   |||||||| || ||||||||||||||| ||||| |||||| ||||   |||||||| |||| ||||| ||| ||||||||    
T  10526210 attcgaaccgtttatgtgagattatgtaattttagaaatttatggacaaatctgtgtaatttggatcgtttacatgtcattaagtg 10526125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 251 - 377
Target Start/End: Original strand, 23943255 - 23943381
Alignment:
Q  251 atgaatttgtgtttatgtaatttaacaataaatttggttaatttttaccgtttaggtaagattatgtaattttcgaaatgtatggataaattgatgtaat 350  Q
    |||||||||||||||||||||||||| ||  |||||| ||||||| |||||||| || ||||||||||||| |  |||| |||||| |||||  ||||||    
T  23943255 atgaatttgtgtttatgtaatttaacgatttatttgggtaattttgaccgtttatgtgagattatgtaattctataaatttatggacaaatttgtgtaat 23943354  T
Q  351 ttagatcatttacgtgttattaagtgt 377  Q
    || |||| ||||||||| |||||||||    
T  23943355 ttggatcgtttacgtgtcattaagtgt 23943381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 129 - 206
Target Start/End: Complemental strand, 10526838 - 10526761
Alignment:
Q  129 gattacatgtttcacgtgatggttgaaaataacactttacatatttatgtccgatccattgaaatgtaatatttatta 206  Q
    ||||||||||||| |||||||||||||||||||  ||||| | |||||||||||| | ||||| ||||||||||||||    
T  10526838 gattacatgtttcgcgtgatggttgaaaataaccttttacttctttatgtccgattcgttgaagtgtaatatttatta 10526761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 77 - 216
Target Start/End: Complemental strand, 29248924 - 29248784
Alignment:
Q  77 acttttagaagatcgtgtattttccacaacttgtcgaagaagat-gcgacgatgattacatgtttcacgtgatggttgaaaataacactttacatattta 175  Q
    ||||||||||||   |||||||||||  |||| | ||||| ||| | |||| || |||||||||| |  | |||||||||||||||| ||| ||| ||||    
T  29248924 acttttagaagacaatgtattttccaacacttatagaagatgatagagacgttggttacatgtttaatttaatggttgaaaataacattttgcatcttta 29248825  T
Q  176 tgtccgatccattgaaatgtaatatttattaacttgtaata 216  Q
    |||| ||||||||||| |||||||||||| ||| |||||||    
T  29248824 tgtctgatccattgaagtgtaatatttatgaacgtgtaata 29248784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 108
Target Start/End: Original strand, 24503823 - 24503915
Alignment:
Q  15 agaatatgtgatgtaatagtagatgtgccagacatggacttggggggaggataagaaagagaacttttagaagatcgtgtattttccacaactt 108  Q
    |||| |||||||||||||||||||||||||  | ||||||| ||||||||||||| ||||| | ||||  |||| ||| |||||||||||||||    
T  24503823 agaacatgtgatgtaatagtagatgtgccaagcgtggactt-gggggaggataaggaagaggaattttgaaagaccgtatattttccacaactt 24503915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 57 - 198
Target Start/End: Original strand, 23943077 - 23943219
Alignment:
Q  57 gggggaggataagaaagagaacttttagaagatcgtgtattttccacaacttgtcgaagaagat-gcgacgatgattacatgtttcacgtgatggttgaa 155  Q
    ||||||||||||| ||||| |||| | ||||| |||||||| |||||||||| || |||| ||| |||| | ||||| |||||||   || ||||||||     
T  23943077 gggggaggataaggaagaggacttctggaagaccgtgtattatccacaacttctcaaagatgatagcgaggttgatttcatgtttagggtaatggttgag 23943176  T
Q  156 aataacactttacatatttatgtccgatccattgaaatgtaat 198  Q
    ||||||| |||  || ||| |||||||||| ||||| ||||||    
T  23943177 aataacaatttgtatctttttgtccgatccgttgaagtgtaat 23943219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 179 - 244
Target Start/End: Original strand, 12869382 - 12869447
Alignment:
Q  179 ccgatccattgaaatgtaatatttattaacttgtaatatcgtaatttgttcgaatttgtgttcata 244  Q
    ||||||||||||| ||||||||||||||||  ||||||  ||||| |||| |||||||||| ||||    
T  12869382 ccgatccattgaagtgtaatatttattaacgcgtaatagtgtaatgtgtttgaatttgtgtccata 12869447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 136
Target Start/End: Original strand, 26153554 - 26153643
Alignment:
Q  47 catggacttggggggaggataagaaagagaacttttagaagatcgtgtattttccacaacttgtcgaagaagat-gcgacgatgattacat 136  Q
    ||||||||||||| ||||||||  ||||  |||||| ||||| ||| ||||||||||||||| ||||||| ||| |||||  |||||||||    
T  26153554 catggacttgggg-gaggataaagaagatgacttttggaagaccgtatattttccacaacttatcgaagatgatagcgacattgattacat 26153643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 199
Target Start/End: Original strand, 26153860 - 26153912
Alignment:
Q  147 atggttgaaaataacactttacatatttatgtccgatccattgaaatgtaata 199  Q
    |||||| ||||||||| ||||  | |||||||||||||||||||| |||||||    
T  26153860 atggttcaaaataacattttatctctttatgtccgatccattgaagtgtaata 26153912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 159; Significance: 1e-84; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 15 - 383
Target Start/End: Complemental strand, 26506306 - 26505931
Alignment:
Q  15 agaatatgtgatgtaatagtagatgtgccagacatggacttggggggaggataagaaagagaacttttagaagatcgtgtattttccacaacttgtcgaa 114  Q
    |||| ||||||| |||||||| ||||| ||| |||||||||| ||| |||||||  ||||| ||||||  |||| |||||||||||||||||||||||||    
T  26506306 agaacatgtgatataatagtaaatgtgtcaggcatggacttgaggg-aggataaagaagagcacttttgaaagaccgtgtattttccacaacttgtcgaa 26506208  T
Q  115 gaagat-gcgacgatgattacatgtttcacgtgatggttgaaaataacactttacatatttatgtccgatccattgaaatgtaatatttattaacttgta 213  Q
    || ||| |||||| || ||||||||||  |||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||||||||| ||||    
T  26506207 gatgatagcgacgttgcttacatgtttagcgtgatggttgaaaataacactttacatctttatgtccgatcttttgaaatgtaatatttattaacatgta 26506108  T
Q  214 atatcgtaatttgttcgaatttgtgttcatattgttg-------atgaatttgtgtttatgtaatttaacaataaatttggttaatttttaccgtttagg 306  Q
    |||  ||||||||||||||||||| | | ||||||||       |||||||||||||||||| ||||||| || ||||||  || ||||||||||||| |    
T  26506107 atagtgtaatttgttcgaatttgtatccgtattgttgaattttaatgaatttgtgtttatgttatttaacgatgaatttgtgtattttttaccgtttatg 26506008  T
Q  307 taagattatgtaattttcgaaatgtatggataaattgatgtaatttagatcatttacgtgttattaagtgtaattaa 383  Q
    | |||||||||||||||| |||| || ||| |||||| |||||||| |||| ||||| ||| ||||||||| |||||    
T  26506007 tgagattatgtaattttcaaaatttaaggacaaattggtgtaatttggatcgtttacatgtcattaagtgtgattaa 26505931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 15 - 383
Target Start/End: Original strand, 17344239 - 17344605
Alignment:
Q  15 agaatatgtgatgtaatagtagatgtgccagacatggacttggggggaggataagaaagagaacttttagaagatcgtgtattttccacaacttgtcgaa 114  Q
    |||| |||||||||||||||| || |||||  | |||||||||||| |||||||| ||||||||||||  |||| |||||||||||||||||||||||||    
T  17344239 agaacatgtgatgtaatagtaaatatgccaagcgtggacttggggg-aggataaggaagagaacttttgaaagaccgtgtattttccacaacttgtcgaa 17344337  T
Q  115 gaagatgc-gacgatgattacatgtttcacgtgatggttgaaaataacactttacatatttatgtccgatccattgaaatgtaatatttattaacttgta 213  Q
    || ||| | |||| ||||||||||||||  |||||||||||||||||||||||  || |||| ||| ||||||||||| |||||||||||||||| ||||    
T  17344338 gatgataccgacgctgattacatgtttcgtgtgatggttgaaaataacactttgaatctttacgtctgatccattgaagtgtaatatttattaacgtgta 17344437  T
Q  214 atatcgtaatttgttcgaatttgtgttcatattgttg-------atgaatttgtgtttatgtaatttaacaataaatttggttaatttttaccgtttagg 306  Q
    ||||||||||||||||||||||||||   ||||||||       ||||||||||| |||| ||||||||| || ||||||  ||||||| ||| |||| |    
T  17344438 atatcgtaatttgttcgaatttgtgtctgtattgttgaattttaatgaatttgtggttatataatttaacgatgaatttgtgtaattttgaccatttatg 17344537  T
Q  307 taagattatgtaattttcgaaatgtatggataaattgatgtaatttagatcatttacgtgttattaagtgtaattaa 383  Q
    | |||||||||||||         ||||||||||| | |||||||| |||| |||||||||  |||||||| |||||    
T  17344538 tgagattatgtaatt---------tatggataaataggtgtaatttggatcgtttacgtgtcgttaagtgtgattaa 17344605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 57 - 377
Target Start/End: Original strand, 38739917 - 38740246
Alignment:
Q  57 gggggaggataagaaagagaacttttagaagatcgtgtattttccacaacttgtcgaagaagat-gcgacgatgattacatgtttcacgtgatggttgaa 155  Q
    ||||||||||||| ||||| ||  || ||||| |||||||||||||||||| ||| |||| ||| | |||| ||||||||||||||  ||||||||||||    
T  38739917 gggggaggataaggaagaggaccgttggaagaccgtgtattttccacaactagtcaaagatgatagtgacgttgattacatgtttcgtgtgatggttgaa 38740016  T
Q  156 aataacactttacatatttatgtccgatccattgaaatgtaatatttattaacttgtaatatcgtaat-ttgttcgaatttgtgttcatattgttg---- 250  Q
    |||||   ||||||| |||||||||||||| ||||| | |||||||||||||| |||||||  ||||| || | ||||||||||| | ||||||||        
T  38740017 aataatcttttacatctttatgtccgatccgttgaagtctaatatttattaacgtgtaatagtgtaatgttttccgaatttgtgtccgtattgttgaatt 38740116  T
Q  251 ---atgaatttgtgtttatgtaatttaacaataaatttggttaatttttaccgtttaggtaagattatgtaattttcgaaatgtatggataaattgatgt 347  Q
       ||||||| |||||||||||||||||| || ||||||| ||||||| |||||||| || ||||||||||||||| ||||| |||||| |||||  |||    
T  38740117 ttaatgaattcgtgtttatgtaatttaacgatgaatttgggtaattttgaccgtttatgtgagattatgtaattttagaaatttatggacaaatttgtgt 38740216  T
Q  348 aatttagatcatttacgtgttattaagtgt 377  Q
    ||||| |||| ||||||||| |||||||||    
T  38740217 aatttggatcgtttacgtgtcattaagtgt 38740246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 59 - 377
Target Start/End: Complemental strand, 35049488 - 35049161
Alignment:
Q  59 gggaggataagaaagagaacttttagaagatcgtgtattttccacaacttgtcgaagaagat-gcgacgatgattacatgtttcacgtgatggttgaaaa 157  Q
    ||||||||||| ||||| ||  || ||||| || ||||||||||||||| ||| |||| ||| | |||| |||||||||||||| |||||||||||||||    
T  35049488 gggaggataaggaagaggaccgttggaagaccgcgtattttccacaactagtcaaagatgatagtgacgttgattacatgtttcgcgtgatggttgaaaa 35049389  T
Q  158 taacactttacatatttatgtccgatccattgaaatgtaatatttattaacttgtaatatcgtaat-ttgttcgaatttgtgttcatattgttg------ 250  Q
    |||   ||||||| |||||||||||||| ||||| |||||||||||||||  |||||||  ||||| || | ||||||||||| | ||||||||          
T  35049388 taatcttttacatctttatgtccgatccgttgaagtgtaatatttattaatgtgtaatagtgtaatgttttccgaatttgtgtccgtattgttgaatttt 35049289  T
Q  251 -atgaatttgtgtttatgtaatttaacaataaatttggttaatttttaccgtttaggtaagattatgtaattttcgaaatgtatggataaattgatgtaa 349  Q
     ||||||||||||| |||||||||||| || ||||||| ||||||| |||||||| || ||||||||||||||| ||||| |||||| |||||  |||||    
T  35049288 aatgaatttgtgttgatgtaatttaacgatgaatttgggtaattttgaccgtttatgtgagattatgtaattttagaaatttatggacaaatttgtgtaa 35049189  T
Q  350 tttagatcatttacgtgttattaagtgt 377  Q
    ||| |||| ||||||||| |||||||||    
T  35049188 tttggatcgtttacgtgtcattaagtgt 35049161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 57 - 377
Target Start/End: Complemental strand, 20883685 - 20883356
Alignment:
Q  57 gggggaggataagaaagagaacttttagaagatcgtgtattttccacaacttgtcgaagaagat-gcgacgatgattacatgtttcacgtgatggttgaa 155  Q
    ||||||||||||| ||||| ||  || ||||| |||||||||||||||||| ||| |||| ||| | |||| |||||||||||||| || ||||||||||    
T  20883685 gggggaggataaggaagaggaccgttggaagaccgtgtattttccacaactagtcaaagatgatagtgacgttgattacatgtttcgcgagatggttgaa 20883586  T
Q  156 aataacactttacatatttatgtccgatccattgaaatgtaatatttattaacttgtaatatcgtaat-ttgttcgaatttgtgttcatattgttg---- 250  Q
    ||||||  ||||||| ||||||||| |||| ||||||| |||||||||||||| ||||||| |||||| || | |||||||||||   ||||||||        
T  20883585 aataaccttttacatctttatgtccaatccgttgaaatttaatatttattaacgtgtaatagcgtaatgttttccgaatttgtgtctgtattgttgaatt 20883486  T
Q  251 ---atgaatttgtgtttatgtaatttaacaataaatttggttaatttttaccgtttaggtaagattatgtaattttcgaaatgtatggataaattgatgt 347  Q
       ||||||||||||| |||||||||||| || ||||||| ||||||| |||||| | || |||||||||| |||| ||||| |||||| |||||  |||    
T  20883485 ttaatgaatttgtgttgatgtaatttaacgatgaatttgggtaattttgaccgttcatgtgagattatgtatttttagaaatttatggacaaatttgtgt 20883386  T
Q  348 aatttagatcatttacgtgttattaagtgt 377  Q
    ||||| |||  ||||||||| |||||||||    
T  20883385 aatttggattgtttacgtgtcattaagtgt 20883356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 57 - 235
Target Start/End: Original strand, 6374702 - 6374881
Alignment:
Q  57 gggggaggataagaaagagaacttttagaagatcgtgtattttccacaacttgtcgaagaagat-gcgacgatgattacatgtttcacgtgatggttgaa 155  Q
    ||||||||||||| || || | |||| ||||| ||| |||| ||||||||||||| |||| ||  |||||| |||||||||||||    | |||||| ||    
T  6374702 gggggaggataaggaataggattttttgaagaccgtatattatccacaacttgtcaaagatgacagcgacgttgattacatgtttaggttaatggttaaa 6374801  T
Q  156 aataacactttacatatttatgtccgatccattgaaatgtaatatttattaacttgtaatatcgtaatttgttcgaattt 235  Q
    ||||| | ||||||| |||||||| ||||| ||||| |||||||||||||||  |||||||  ||||| |||||||||||    
T  6374802 aataatattttacatctttatgtctgatccgttgaagtgtaatatttattaatgtgtaatagtgtaatgtgttcgaattt 6374881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 59 - 239
Target Start/End: Original strand, 16109409 - 16109590
Alignment:
Q  59 gggaggataagaaagagaacttttagaagatcgtgtattttccacaacttgtcgaagaagat-gcgacgatgattacatgtttcacgtgatggttgaaaa 157  Q
    ||||||||||| ||||| | |||| ||||| |||||||| |||| ||||| || |||| ||| |||| | || |||||| |||  |||||||||||| ||    
T  16109409 gggaggataaggaagaggatttttggaagaccgtgtattatccataacttctcaaagatgatagcgatgttgcttacatatttagcgtgatggttgagaa 16109508  T
Q  158 taacactttacatatttatgtccgatccattgaaatgtaatatttattaacttgtaatatcgtaatttgttcgaatttgtgt 239  Q
    ||||| ||| ||| |||||||| ||||| ||||| |||||||||||||||  ||||||   ||||| | |||||||||||||    
T  16109509 taacattttccatctttatgtctgatccgttgaagtgtaatatttattaaagtgtaattgtgtaatgttttcgaatttgtgt 16109590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 147 - 240
Target Start/End: Complemental strand, 8736435 - 8736342
Alignment:
Q  147 atggttgaaaataacactttacatatttatgtccgatccattgaaatgtaatatttattaacttgtaatatcgtaatttgttcgaatttgtgtt 240  Q
    |||||||||||||||| ||||||| |||||||| ||| ||| ||| |||||||||||||||| |||||||  |||||  |||||||||||||||    
T  8736435 atggttgaaaataacattttacatttttatgtctgattcatcgaagtgtaatatttattaacgtgtaataatgtaatgcgttcgaatttgtgtt 8736342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 25 - 237
Target Start/End: Original strand, 33937047 - 33937259
Alignment:
Q  25 atgtaatagtagatgtgccagacatggacttggggggaggataagaaagagaacttttagaagatcgtgtattttccacaacttgtcgaagaagat-gcg 123  Q
    ||||| ||||| ||||| || || |||||||| ||| |||||||  ||||| |||||| |||||   | ||||||||||||||| ||||| | ||| | |    
T  33937047 atgtagtagtacatgtgtcaaacgtggacttgaggg-aggataaagaagaggacttttggaagacgatatattttccacaacttatcgaaaatgatagtg 33937145  T
Q  124 acgatgattacatgtttcacgtgatggttgaaaataacactttacatatttatgtccgatccattgaaatgtaatatttattaacttgtaatatcgtaat 223  Q
    ||  |||||||||||||    | |||||||||||||| | ||||| | ||||||| || || |||||| |||||||||||||||| |||||||  |||||    
T  33937146 acattgattacatgtttagattaatggttgaaaataatattttacttctttatgttcggtctattgaagtgtaatatttattaacatgtaatagtgtaat 33937245  T
Q  224 ttgttcgaatttgt 237  Q
     ||||| |||||||    
T  33937246 gtgttcaaatttgt 33937259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 28196967 - 28197020
Alignment:
Q  147 atggttgaaaataacactttacatatttatgtccgatccattgaaatgtaatat 200  Q
    |||||||||||||||| ||||||||||| |||| ||||||||||| ||||||||    
T  28196967 atggttgaaaataacattttacatatttgtgtctgatccattgaagtgtaatat 28197020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 139; Significance: 1e-72; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 57 - 377
Target Start/End: Original strand, 25818508 - 25818836
Alignment:
Q  57 gggggaggataagaaagagaacttttagaagatcgtgtattttccacaacttgtcgaagaagat-gcgacgatgattacatgtttcacgtgatggttgaa 155  Q
    ||||||||||||| |||||  |  || ||||| |||||||||||||||||| ||| |||| ||| |||||| |||||||||||||| |||||||||||||    
T  25818508 gggggaggataaggaagagggccgttggaagaccgtgtattttccacaactagtcaaagatgatagcgacgttgattacatgtttcgcgtgatggttgaa 25818607  T
Q  156 aataacactttacatatttatgtccgatccattgaaatgtaatatttattaacttgtaatatcgtaatttgttcgaatttgtgttcatattgttg----- 250  Q
    ||||||  ||||||| |||||||||||||| ||||| ||| |||||||||||| | |||||||||||||||||||||||||||| | |||| |||         
T  25818608 aataaccttttacatctttatgtccgatccgttgaagtgtgatatttattaacgtttaatatcgtaatttgttcgaatttgtgtccgtattattgaattt 25818707  T
Q  251 --atgaatttgtgtttatgtaatttaacaataaatttggttaatttttaccgtttaggtaagattatgtaattttcgaaatgtatggataaattgatgta 348  Q
      |||||||||||||||||||||||||| || ||||||| ||||||| |  ||||| || |||||||||||||||  |||| |||||| |||||| ||||    
T  25818708 taatgaatttgtgtttatgtaatttaacgatgaatttgggtaattttgatagtttacgtgagattatgtaattttaaaaatttatggacaaattggtgta 25818807  T
Q  349 atttagatcatttacgtgttattaagtgt 377  Q
    |||| |||| ||||||||| |||||||||    
T  25818808 atttggatcgtttacgtgtcattaagtgt 25818836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 57 - 377
Target Start/End: Original strand, 1180845 - 1181175
Alignment:
Q  57 gggggaggataagaaagagaacttttagaagatcgtgtattttccacaacttgtcgaagaagat-gcgacgatgattacatgtttcacgtgatggttgaa 155  Q
    ||||||||||||||||||| ||| || ||||| ||||||| |||||||||| ||| |||| ||| | |||| ||||||||||||||  ||||| ||||||    
T  1180845 gggggaggataagaaagaggactgttggaagaccgtgtatattccacaactagtcaaagatgatcgtgacgttgattacatgtttcgtgtgattgttgaa 1180944  T
Q  156 aataacactttacatatttatgtccgatccattgaaatgtaata-tttattaacttgtaatatcgtaat-ttgttcgaatttgtgttcatattgttg--- 250  Q
    ||||||  ||||||| |||||||||||||| ||||| ||||||| ||||||||| |||||||  ||||| || |||||||||||||   ||||||||       
T  1180945 aataaccttttacatctttatgtccgatccgttgaagtgtaatattttattaacgtgtaatagtgtaatgtttttcgaatttgtgtctgtattgttgaat 1181044  T
Q  251 ----atgaatttgtgtttatgtaatttaacaataaatttggttaatttttaccgtttaggtaagattatgtaattttcgaaatgtatggataaattgatg 346  Q
        ||||| ||||||| |||||||||||| || ||||||| ||||||| ||||||||  | ||||||||||||||| ||||| |||||| |||||  ||    
T  1181045 tttaatgaacttgtgttgatgtaatttaacgatgaatttgggtaattttgaccgtttatatgagattatgtaattttagaaatttatggacaaatttgtg 1181144  T
Q  347 taatttagatcatttacgtgttattaagtgt 377  Q
    |||||| |||| |||| |||| |||||||||    
T  1181145 taatttggatcgtttatgtgtcattaagtgt 1181175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 15 - 295
Target Start/End: Complemental strand, 7318504 - 7318217
Alignment:
Q  15 agaatatgtgatgtaatagtagatgtgccagacatggacttggggggaggataagaaagagaacttttagaagatcgtgtattttccacaacttgtcgaa 114  Q
    |||| |||||||||||||||| |||| |||| | ||||| | |||| |||||||| |||||||||||| |||||  |||||||||||||||||| |||||    
T  7318504 agaacatgtgatgtaatagtaaatgtcccaggcgtggacctagggg-aggataaggaagagaacttttggaagactgtgtattttccacaacttctcgaa 7318406  T
Q  115 gaagat-gcgacgatgattacatgtttcacgtgatggttgaaaataacactttacatatttatgtccgatccattgaaatgtaatatttattaacttgta 213  Q
    || ||| |||||| || |||| |||||  ||||||||||||||||||| |||||||| |||||||| |||   ||||| |||||||||||||||| ||||    
T  7318405 gatgatagcgacgttgcttacgtgtttagcgtgatggttgaaaataacgctttacatctttatgtcagatatgttgaagtgtaatatttattaacgtgta 7318306  T
Q  214 atatcgtaatttgttcgaatttgtgttcatattgttg-------atgaatttgtgtttatgtaatttaacaataaatttggttaatttt 295  Q
    |||  ||||||||||| ||||||||| | ||||||||       | |||||||||||||||||||||||| || ||||||| |||||||    
T  7318305 atagtgtaatttgttcaaatttgtgtccgtattgttgaattttaaagaatttgtgtttatgtaatttaacgatgaatttgggtaatttt 7318217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 57 - 377
Target Start/End: Complemental strand, 30703768 - 30703439
Alignment:
Q  57 gggggaggataagaaagagaacttttagaagatcgtgtattttccacaacttgtcgaagaagat-gcgacgatgattacatgtttcacgtgatggttgaa 155  Q
    ||||||||||||| ||||| |   || ||||| |||||||||||||||||| ||| |||| ||| | |||| |||||||||||||| ||||||| |||||    
T  30703768 gggggaggataaggaagaggatcgttggaagaccgtgtattttccacaactagtcaaagatgatagtgacgttgattacatgtttcgcgtgatgtttgaa 30703669  T
Q  156 aataacactttacatatttatgtccgatccattgaaatgtaatatttattaacttgtaatatcgtaat-ttgttcgaatttgtgttcatattgttg---- 250  Q
    ||||||  ||||||| |||||||| ||||| ||||| |||||||||||||||  || ||||  ||||| || | | ||||||||| | ||||||||        
T  30703668 aataaccttttacatctttatgtctgatccgttgaagtgtaatatttattaatgtgcaatagtgtaatgttttcctaatttgtgtccgtattgttgaatt 30703569  T
Q  251 ---atgaatttgtgtttatgtaatttaacaataaatttggttaatttttaccgtttaggtaagattatgtaattttcgaaatgtatggataaattgatgt 347  Q
       ||||||||||||| |||||||||||| || ||||||| ||||||| |||||||| || ||||||||||||||| |||||||||| | |||||  |||    
T  30703568 ttaatgaatttgtgttgatgtaatttaacgatgaatttgggtaattttgaccgtttatgtgagattatgtaattttagaaatgtatgtaaaaatttgtgt 30703469  T
Q  348 aatttagatcatttacgtgttattaagtgt 377  Q
    ||||| |||| ||||| ||| |||||||||    
T  30703468 aatttggatcgtttacatgtcattaagtgt 30703439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 59 - 287
Target Start/End: Original strand, 12067398 - 12067634
Alignment:
Q  59 gggaggataagaaagagaacttttagaagatcgtgtattttccacaacttgtcgaagaagat-gcgacgatgattacatgtttcacgtgatggttgaaaa 157  Q
    ||||||||||| ||||| ||  || ||||| |||||||||||||||||| ||| ||||  || | |||| |||||||||||||| |||||||||||||||    
T  12067398 gggaggataaggaagaggaccgttggaagaccgtgtattttccacaactagtcaaagataatagtgacgttgattacatgtttcgcgtgatggttgaaaa 12067497  T
Q  158 taacactttacatatttatgtccgatccattgaaatgtaatatttattaacttgtaatatcgtaat-ttgttcgaatttgtgttcatattgttg------ 250  Q
    ||||  ||||||| |||||||| ||| | ||||| |||||||||||||||| |||||||  ||||| || | ||||||||||| | ||||||||          
T  12067498 taaccttttacatctttatgtctgat-cgttgaagtgtaatatttattaacgtgtaatagtgtaatgttttccgaatttgtgtccgtattgttgaatttt 12067596  T
Q  251 -atgaatttgtgtttatgtaatttaacaataaatttgg 287  Q
     ||||||||||| | |||||||||||| || |||||||    
T  12067597 aatgaatttgtgctgatgtaatttaacgatgaatttgg 12067634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 30 - 251
Target Start/End: Original strand, 23942989 - 23943211
Alignment:
Q  30 atagtagatgtgccagacatggacttggggggaggataagaaagagaacttttagaagatcgtgtattttccacaacttgtcgaagaagat-gcgacgat 128  Q
    |||||| ||||||||| | ||||||||||| ||||||||| ||||| |||| | ||||| |||||||| |||||||||| || |||| ||| |||||| |    
T  23942989 atagtaaatgtgccaggcctggacttgggg-gaggataaggaagaggacttctggaagaccgtgtattatccacaacttctcaaagatgatagcgacgtt 23943087  T
Q  129 gattacatgtttcacgtgatggttgaaaataacactttacatatttatgtccgatccattgaaatgtaatatttattaacttgtaatatcgtaat-ttgt 227  Q
    |||| |||||||   || |||||||| |||||||||||  || ||| |||||||||| ||||| ||||||  ||||| |  |||||||  ||||| || |    
T  23943088 gatttcatgtttagggtaatggttgagaataacactttgtatctttttgtccgatccgttgaagtgtaatcattatttaagtgtaatagtgtaatgtttt 23943187  T
Q  228 tcgaatttgtgttcatattgttga 251  Q
    |||||||||||| | |||||||||    
T  23943188 tcgaatttgtgtccgtattgttga 23943211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 172 - 238
Target Start/End: Complemental strand, 38810342 - 38810276
Alignment:
Q  172 tttatgtccgatccattgaaatgtaatatttattaacttgtaatatcgtaatttgttcgaatttgtg 238  Q
    |||||||||||||||||||| ||||||||| | |||| |||||||  ||||| ||||||||||||||    
T  38810342 tttatgtccgatccattgaagtgtaatattgagtaacatgtaatagtgtaatgtgttcgaatttgtg 38810276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 251 - 367
Target Start/End: Complemental strand, 36185866 - 36185750
Alignment:
Q  251 atgaatttgtgtttatgtaatttaacaataaatttggttaatttttaccgtttaggtaagattatgtaattttcgaaatgtatggataaattgatgtaat 350  Q
    |||||||| || |||||||||||||| || ||||||| |||  || |||||||| || | ||||||| ||||| | ||| |||||| |||||  ||||||    
T  36185866 atgaatttatgcttatgtaatttaacgatgaatttgggtaaaattgaccgtttatgtcaaattatgtcattttaggaatttatggacaaatttgtgtaat 36185767  T
Q  351 ttagatcatttacgtgt 367  Q
    || |||| |||||||||    
T  36185766 ttggatcgtttacgtgt 36185750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 377
Target Start/End: Original strand, 23943242 - 23943322
Alignment:
Q  297 accgtttaggtaagattatgtaattttcgaaatgtatggataaattgatgtaatttagatcatttacgtgttattaagtgt 377  Q
    |||||||| || |||||||||||||||  |||| |||||| |||||   ||||||| ||||  |||||||| |||||||||    
T  23943242 accgtttatgtgagattatgtaattttataaatttatggacaaatttgcgtaatttggatcgcttacgtgtcattaagtgt 23943322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 57 - 377
Target Start/End: Original strand, 1031070 - 1031399
Alignment:
Q  57 gggggaggataagaaagagaacttttagaagatcgtgtattttccacaacttgtcgaagaagat-gcgacgatgattacatgtttcacgtgatggttgaa 155  Q
    ||||||||||||| ||||| ||  ||| |||| |||||||||||||||||| ||| |||| ||| | |||| |||||||||||||| |||||||||||||    
T  1031070 gggggaggataaggaagaggaccgttaaaagaccgtgtattttccacaactagtcaaagatgatagtgacgttgattacatgtttcgcgtgatggttgaa 1031169  T
Q  156 aataacactttacatatttatgtccgatccattgaaatgtaatatttattaacttgtaatatcgtaat-ttgttcgaatttgtgttcatattgttg---- 250  Q
    ||||||  ||||||| |||||||||||| | ||||| |||||||||||||||| |||||||  ||||| || | ||||||||||| | ||| ||||        
T  1031170 aataaccttttacatctttatgtccgatgcgttgaagtgtaatatttattaacgtgtaatagtgtaatgttttccgaatttgtgtccgtatcgttgaatt 1031269  T
Q  251 ---atgaatttgtgtttatgtaatttaacaataaatttggttaatttttaccgtttaggtaagattatgtaattttcgaaatgtatggataaattgatgt 347  Q
       ||||||||||||| |||||||||||| || ||||||| ||||||| |||||||| || ||||||||||||||| ||||| |||||| |||||  |||    
T  1031270 ttaatgaatttgtgttgatgtaatttaacgatgaatttgggtaattttgaccgtttatgtgagattatgtaattttagaaatttatggacaaatttgtgt 1031369  T
Q  348 aatttagatcatttacgtgttattaagtgt 377  Q
    ||||| |||| ||||||||| |||||||||    
T  1031370 aatttggatcgtttacgtgtcattaagtgt 1031399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 121 - 208
Target Start/End: Complemental strand, 7648167 - 7648080
Alignment:
Q  121 gcgacgatgattacatgtttcacgtgatggttgaaaataacactttacatatttatgtccgatccattgaaatgtaatatttattaac 208  Q
    |||||| |||||||||||||    | ||| |||||||||||| |||| |||||  ||| || ||||||||| ||||||||||||||||    
T  7648167 gcgacgttgattacatgtttaggttaatgcttgaaaataacattttatatattcgtgttcgctccattgaagtgtaatatttattaac 7648080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 4e-51; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 90 - 373
Target Start/End: Original strand, 1938734 - 1939026
Alignment:
Q  90 cgtgtattttccacaacttgtcgaagaagat-gcgacgatgattacatgtttcacgtgatggttgaaaataacactttacatatttatgtccgatccatt 188  Q
    |||||||||||||||||| ||| |||| ||| | |||| |||||||||||||| |||||||||||||||||||  ||||||| |||||||||||||||||    
T  1938734 cgtgtattttccacaactagtcaaagatgatagtgacgttgattacatgtttcgcgtgatggttgaaaataaccttttacatctttatgtccgatccatt 1938833  T
Q  189 gaaatgtaatatttattaacttgtaatatcgtaat-ttgttcgaatttgtgttcatattgttg-------atgaatttgtgtttatgtaatttaacaata 280  Q
    ||| |||||||||||||||| | |||||  ||||| || | |||||||||||   ||||||||       ||||||||||||| |||||||||||| ||     
T  1938834 gaagtgtaatatttattaacatataatagtgtaatgttttccgaatttgtgtctgtattgttgaattttaatgaatttgtgttgatgtaatttaacgatg 1938933  T
Q  281 aatttggttaatttttaccgtttaggtaagattatgtaattttcgaaatgtatggataaattgatgtaatttagatcatttacgtgttattaa 373  Q
    ||||||  |||||||  ||||||| || ||||||||||||||| ||||| |||||| |||||  | |||||| |||| ||||||||| |||||    
T  1938934 aatttgagtaattttggccgtttatgtgagattatgtaattttagaaatttatggacaaatttgtataatttggatcgtttacgtgtcattaa 1939026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 71 - 377
Target Start/End: Complemental strand, 156797 - 156482
Alignment:
Q  71 aagagaacttttagaagatcgtgtattttccacaacttgtcgaagaagat-gcgacgatgattacatgtttcacgtgatggttgaaaataacactttaca 169  Q
    ||||| |||| | ||||| |||||||| |||||||||| || |||| ||| |||||| ||||| |||||||   || |||||||| |||||||||||  |    
T  156797 aagaggacttctggaagaccgtgtattatccacaacttctcaaagatgatagcgacgttgatttcatgtttagggtaatggttgagaataacactttgta 156698  T
Q  170 tatttatgtccgatccattgaaatgtaatatttattaacttgtaatatcgtaatttgttc-gaatttgtgttcatattgttga-------tgaatttgtg 261  Q
    | ||| |||||||||| ||||| ||||||  ||||| |   ||||||  | ||| | ||| |||||||||| | |||||||||       ||||||||||    
T  156697 tctttttgtccgatccgttgaagtgtaatcattatttaagggtaatagtgaaatgttttccgaatttgtgtccgtattgttgaattttaatgaatttgtg 156598  T
Q  262 tttatgtaatttaacaataaatttggttaatttttaccgtttaggtaagattatgtaattttcgaaatgtatggataaattgatgtaatttagatcattt 361  Q
    ||||||||||||||| || ||||||| | |||||||||||||| ||||||||||||||||||  |||| |||||| |||||  |||||||| |||| |||    
T  156597 tttatgtaatttaacgatgaatttgggtgatttttaccgtttatgtaagattatgtaattttataaatttatggacaaatttgtgtaatttggatcgttt 156498  T
Q  362 acgtgttattaagtgt 377  Q
    |||||| || ||||||    
T  156497 acgtgtcatcaagtgt 156482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 84 - 376
Target Start/End: Complemental strand, 50334759 - 50334452
Alignment:
Q  84 gaagatcgtgtattttccacaacttgtcgaagaagat-gcgacgatgattacatgtttcacgtgatggttgaaaataacactttacatatttatgtccga 182  Q
    ||||| |||||||||||||||||| ||| |||| ||| | |||| |||||||||||||| |||||||||||||||||||  ||||||| |||||||| ||    
T  50334759 gaagaccgtgtattttccacaactagtcaaagatgatagtgacgttgattacatgtttcgcgtgatggttgaaaataactttttacatctttatgtctga 50334660  T
Q  183 tccattgaaatgtaatatttatta------acttgtaatatcgtaat-ttgttcgaatttgtgttcatattgttg-------atgaatttgtgtttatgt 268  Q
    ||  ||||| ||| ||||||||||      | | ||||||  ||||| || |||||||||||||   ||||||||       ||||||||||||| ||||    
T  50334659 tctgttgaagtgttatatttattaatgtgtaatagtaatagtgtaatgtttttcgaatttgtgtctgtattgttgaattttaatgaatttgtgttgatgt 50334560  T
Q  269 aatttaacaataaatttggttaatttttaccgtttaggtaagattatgtaattttcgaaatgtatggataaattgatgtaatttagatcatttacgtgtt 368  Q
    ||||||||||| ||||||| ||||| | || |||||    ||||||||||||||  ||||| |||||| |||||  |||||||| |||| |||||||||     
T  50334559 aatttaacaatgaatttgggtaattctgactgtttataagagattatgtaatttgagaaatttatggacaaatttgtgtaatttggatcgtttacgtgtg 50334460  T
Q  369 attaagtg 376  Q
     |||||||    
T  50334459 tttaagtg 50334452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 57 - 205
Target Start/End: Complemental strand, 50007018 - 50006869
Alignment:
Q  57 gggggaggataagaaagagaacttttagaagatcgtgtattttccacaacttgtcgaagaagatgc-gacgatgattacatgtttcacgtgatggttgaa 155  Q
    ||||||||||||| ||||  | | || ||| | |||||||||||||||||| ||| |||| ||| | |||| |||||||| ||||| |||||||||||||    
T  50007018 gggggaggataaggaagatgattgttggaaaaccgtgtattttccacaactagtcaaagatgatactgacgttgattacaagtttcccgtgatggttgaa 50006919  T
Q  156 aataacactttacatatttatgtccgatccattgaaatgtaatatttatt 205  Q
    ||||||  ||||||| |||||||||||||| ||||| |||||||||||||    
T  50006918 aataaccttttacatctttatgtccgatccgttgaagtgtaatatttatt 50006869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 22 - 377
Target Start/End: Original strand, 18486390 - 18486749
Alignment:
Q  22 gtgatgtaatagtagatgtgccagacatggacttggggggaggataagaaagagaacttttagaagatcgtgtattttccacaacttgtcgaagaagat- 120  Q
    ||||||| |||||| |||||||||   |||||||||||| || ||||| ||||  |||| | ||||| |||||||| |||||   || || |||| |||     
T  18486390 gtgatgtcatagtaaatgtgccaggtgtggacttggggg-agaataaggaagaagacttctggaagaccgtgtattatccac---ttctcaaagatgata 18486485  T
Q  121 gcgacgatgattacatgtttcacgtgatggttgaaaataacactttacatatttatgtccgatccattgaaatgtaatatttattaacttgtaatatcgt 220  Q
    |||||| |||||||||||||    | |||||||| ||||| |||||  || ||| |||| ||||| ||||| ||||||||||||| |  |||||||  ||    
T  18486486 gcgacgttgattacatgtttaggttaatggttgagaataatactttgtatctttttgtc-gatccgttgaagtgtaatatttatttaagtgtaatagtgt 18486584  T
Q  221 aatttgttc-gaatttgtgttcatattgttga-------tgaatttgtgtttatgtaatttaacaataaatttggttaatttttaccgtttaggtaagat 312  Q
    ||| | ||| ||||||||||   |||||||||       ||||||||||||||||||||||||| || ||||||| |||  || |||||||| || ||||    
T  18486585 aatgttttccgaatttgtgtctgtattgttgaattttaatgaatttgtgtttatgtaatttaacgatgaatttgggtaaaattgaccgtttatgtcagat 18486684  T
Q  313 tatgtaattttcgaaatgtatggataaattgatgtaatttagatcatttacgtgttattaagtgt 377  Q
    ||||| ||||| ||||| || ||| |||||  |||||||| |||| ||||||||| |||||||||    
T  18486685 tatgtcattttagaaatttaaggacaaatttgtgtaatttggatcgtttacgtgtcattaagtgt 18486749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 77 - 239
Target Start/End: Original strand, 41784773 - 41784936
Alignment:
Q  77 acttttagaagatcgtgtattttccacaacttgtcgaagaagat-gcgacgatgattacatgtttcacgtgatggttgaaaataacactttacatattta 175  Q
    ||||||||||||   |||||||||||  |||| ||||| | ||| | |||| |||||||||||||    | |||||||||||||||| ||||||| ||||    
T  41784773 acttttagaagacaatgtattttccaacacttatcgaatatgatagagacgttgattacatgtttagtttaatggttgaaaataacattttacatcttta 41784872  T
Q  176 tgtccgatccattgaaatgtaatatttattaacttgtaatatcgtaatttgttcgaatttgtgt 239  Q
    |||| ||||||||||| |||||||||||| ||| |||||||  ||||| |||||||||||||||    
T  41784873 tgtctgatccattgaagtgtaatatttatgaacgtgtaatagtgtaatgtgttcgaatttgtgt 41784936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 299 - 382
Target Start/End: Original strand, 41784983 - 41785066
Alignment:
Q  299 cgtttaggtaagattatgtaattttcgaaatgtatggataaattgatgtaatttagatcatttacgtgttattaagtgtaatta 382  Q
    |||||| || ||||||||| |||||   ||| || ||| ||||||||||||||||||||||||| |||| ||||||||| ||||    
T  41784983 cgtttatgtgagattatgtgattttgagaatttaaggacaaattgatgtaatttagatcatttatgtgtcattaagtgtgatta 41785066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 377
Target Start/End: Original strand, 41420220 - 41420298
Alignment:
Q  299 cgtttaggtaagattatgtaattttcgaaatgtatggataaattgatgtaatttagatcatttacgtgttattaagtgt 377  Q
    |||||| || |||||||||||||||  |||| |||||| |||||  |||||||| |||| ||||||||| |||||||||    
T  41420220 cgtttatgtgagattatgtaattttataaatttatggacaaatttgtgtaatttggatcgtttacgtgtcattaagtgt 41420298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 147 - 240
Target Start/End: Original strand, 18777753 - 18777844
Alignment:
Q  147 atggttgaaaataacactttacatatttatgtccgatccattgaaatgtaatatttattaacttgtaatatcgtaatttgttcgaatttgtgtt 240  Q
    ||||||| ||||||||  |||||| ||| | || | |||||||||||||||||| ||||||| ||||| |  ||||| ||||||||| ||||||    
T  18777753 atggttgcaaataaca--ttacatctttgtttctgctccattgaaatgtaatatgtattaacgtgtaaaagtgtaatatgttcgaatatgtgtt 18777844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 304
Target Start/End: Complemental strand, 5534115 - 5534062
Alignment:
Q  251 atgaatttgtgtttatgtaatttaacaataaatttggttaatttttaccgttta 304  Q
    ||||||||||||| |||||| ||||| || ||||||| ||||||| ||||||||    
T  5534115 atgaatttgtgttgatgtaaattaacgatgaatttggataattttgaccgttta 5534062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 101; Significance: 6e-50; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 129 - 376
Target Start/End: Original strand, 33228392 - 33228646
Alignment:
Q  129 gattacatgtttcacgtgatggttgaaaataacactttacatatttatgtccgatccattgaaatgtaatatttattaacttgtaatatcgtaatttgtt 228  Q
    ||||||||||||| |||||||||||||||||||| ||||||| |||| ||||||||  ||||| | |||||||||||||| | ||||||||||||||  |    
T  33228392 gattacatgtttcgcgtgatggttgaaaataacattttacatctttacgtccgatctgttgaagtctaatatttattaacatttaatatcgtaattttct 33228491  T
Q  229 cgaatttgtgttcatattgttg-------atgaatttgtgtttatgtaatttaacaataaatttggttaatttttaccgtttaggtaagattatgtaatt 321  Q
    |||||||||||   |||| |||       |||||||||||||||||||||||||| || ||||||| ||||||  |||||||| || |||||||||||||    
T  33228492 cgaatttgtgtctgtattattgaattttaatgaatttgtgtttatgtaatttaacgatgaatttgggtaatttgaaccgtttatgtgagattatgtaatt 33228591  T
Q  322 ttcgaaatgtatggataaattgatgtaatttagatcatttacgtgttattaagtg 376  Q
    || ||||| |||||| |||||  |||||||| |||| ||||| ||| ||||||||    
T  33228592 ttagaaatttatggacaaatttgtgtaatttggatcgtttacatgtcattaagtg 33228646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 30 - 377
Target Start/End: Complemental strand, 5016177 - 5015822
Alignment:
Q  30 atagtagatgtgccagacatggacttggggggaggataagaaagagaacttttagaagatcgtgtattttccacaacttgtcgaagaagat-gcgacgat 128  Q
    |||||| ||||||||||| | |||||| ||| |||||||| ||||| |||| |||||||  ||||||| |||||||||| || |||| ||| | |||| |    
T  5016177 atagtaaatgtgccagacctagacttgaggg-aggataaggaagaggacttctagaagactgtgtattatccacaacttctcaaagatgatagtgacgtt 5016079  T
Q  129 gattacatgtttcacgtgatggttgaaaataacactttacatatttatgtccgatccattgaaatgtaatatttattaacttgtaatatcgtaatttgtt 228  Q
    |||| ||| |||   || |||||||| |||||||||||  || ||| |||||||||| ||||| ||||||  ||||| |  ||||| |  ||||| | ||    
T  5016078 gatttcatatttagggtaatggttgagaataacactttgtatctttttgtccgatccgttgaagtgtaatcattatttaagtgtaacagtgtaatatttt 5015979  T
Q  229 c-gaatttgtgttcatattgttga-------tgaatttgtgtttatgtaatttaacaataaatttggttaatttttaccgtttaggtaagattatgtaat 320  Q
    | |||||||||| | |||||||||       ||||||||||||| ||||||||||| || ||||||| ||||||| |||||||| || ||||||| ||||    
T  5015978 ccgaatttgtgtccgtattgttgaattttaatgaatttgtgtttgtgtaatttaacgatgaatttgggtaattttgaccgtttatgtgagattatttaat 5015879  T
Q  321 tttcgaaatgtatggataaattgatgtaatttagatcatttacgtgttattaagtgt 377  Q
    |||  |||| |||| | |||||  |||||||| |||| ||||||||| |||||||||    
T  5015878 tttataaatttatgtacaaatttgtgtaatttggatcgtttacgtgtcattaagtgt 5015822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 25 - 237
Target Start/End: Complemental strand, 15893188 - 15892979
Alignment:
Q  25 atgtaatagtagatgtgccagacatggacttggggggaggataagaaagagaacttttagaagatcgtgtattttccacaacttgtcgaagaagatgcga 124  Q
    ||||||||||| ||| ||||  | |||||||||||| |||||||| ||||  |||||| ||||| |||||||||||||||||||||| |||| |||        
T  15893188 atgtaatagtacatgcgccatgcgtggacttggggg-aggataaggaagatgacttttggaagaccgtgtattttccacaacttgtcaaagatgatag-- 15893092  T
Q  125 cgatgattacatgtttcacgtgatggttgaaaataacactttacatatttatgtccgatccattgaaatgtaatatttattaacttgtaatatcgtaatt 224  Q
    ||||  ||||||||||    | |||||||||||||||| ||||||| |||||||| ||||| ||||| |||||||||||||||| |||||||  |||||     
T  15893091 cgatatttacatgtttaggttaatggttgaaaataacattttacatctttatgtctgatccgttgaagtgtaatatttattaacgtgtaatagtgtaatg 15892992  T
Q  225 tgttcgaatttgt 237  Q
    |||| ||||||||    
T  15892991 tgtttgaatttgt 15892979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 251 - 377
Target Start/End: Original strand, 5075804 - 5075930
Alignment:
Q  251 atgaatttgtgtttatgtaatttaacaataaatttggttaatttttaccgtttaggtaagattatgtaattttcgaaatgtatggataaattgatgtaat 350  Q
    |||||||| ||||||||||||||||| || ||||||| ||||||| |||||||| || | |||||||||||||  |||| |||||| | ||| |||||||    
T  5075804 atgaatttatgtttatgtaatttaacgatgaatttgggtaattttgaccgtttatgtgatattatgtaattttataaatttatggacatatttatgtaat 5075903  T
Q  351 ttagatcatttacgtgttattaagtgt 377  Q
    || |||| ||||||||| |||||||||    
T  5075904 ttggatcgtttacgtgtcattaagtgt 5075930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 147 - 244
Target Start/End: Complemental strand, 4472843 - 4472746
Alignment:
Q  147 atggttgaaaataacactttacatatttatgtccgatccattgaaatgtaatatttattaacttgtaatatcgtaatttgttcgaatttgtgttcata 244  Q
    |||||||||||||||| ||||||| ||| |||| ||||||||||| |||||||||||||||| |||||||  ||||| ||||| ||||||||||||||    
T  4472843 atggttgaaaataacattttacatctttgtgtctgatccattgaagtgtaatatttattaacgtgtaatagtgtaatgtgttcaaatttgtgttcata 4472746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 47 - 190
Target Start/End: Complemental strand, 24619254 - 24619111
Alignment:
Q  47 catggacttggggggaggataagaaagagaacttttagaagatcgtgtattttccacaacttgtcgaagaagat-gcgacgatgattacatgtttcacgt 145  Q
    |||||||||||||| |||||||| ||||| ||||||  ||||||||||||| |||||||||| || |||| ||| | |||| |||||||||||||    |    
T  24619254 catggacttggggg-aggataaggaagaggacttttgaaagatcgtgtattatccacaacttttcaaagatgatagtgacgttgattacatgtttaggtt 24619156  T
Q  146 gatggttgaaaataacactttacatatttatgtccgatccattga 190  Q
     |||||||||||||| | ||| ||| ||| |||||||||||||||    
T  24619155 aatggttgaaaataaaaatttgcatctttgtgtccgatccattga 24619111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 71 - 216
Target Start/End: Original strand, 30944788 - 30944934
Alignment:
Q  71 aagagaacttttagaagatcgtgtattttccacaacttgtcgaagaagat-gcgacgatgattacatgtttcacgtgatggttgaaaataacactttaca 169  Q
    ||||| ||||||||||||   |||||||||||  |||| | ||||| ||| | |||| || |||||||||| |  | |||||||||||||||| ||| ||    
T  30944788 aagaggacttttagaagacaatgtattttccaacacttatagaagatgatagagacgttggttacatgtttaatttaatggttgaaaataacattttgca 30944887  T
Q  170 tatttatgtccgatccattgaaatgtaatatttattaacttgtaata 216  Q
    | |||||||| ||||||||||| |||||||||||| ||| |||||||    
T  30944888 tctttatgtctgatccattgaagtgtaatatttatgaacgtgtaata 30944934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 268 - 377
Target Start/End: Original strand, 22675458 - 22675567
Alignment:
Q  268 taatttaacaataaatttggttaatttttaccgtttaggtaagattatgtaattttcgaaatgtatggataaattgatgtaatttagatcatttacgtgt 367  Q
    ||||||||| || ||||||| ||||||| |||||||| || | ||||||||||||| ||||| |||||| |||||  || ||||  |||| |||| ||||    
T  22675458 taatttaacgatgaatttgggtaattttgaccgtttatgtgatattatgtaattttagaaatttatggaaaaatttgtgcaattcggatcgtttatgtgt 22675557  T
Q  368 tattaagtgt 377  Q
     |||||||||    
T  22675558 cattaagtgt 22675567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 300 - 377
Target Start/End: Original strand, 41601209 - 41601286
Alignment:
Q  300 gtttaggtaagattatgtaattttcgaaatgtatggataaattgatgtaatttagatcatttacgtgttattaagtgt 377  Q
    ||||| || ||||||| ||||||| ||||| ||||||||||||  |||||||| |||| ||||||||| |||||||||    
T  41601209 gtttatgtgagattatataattttagaaatttatggataaatttgtgtaatttggatcgtttacgtgtcattaagtgt 41601286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 232
Target Start/End: Original strand, 29671294 - 29671379
Alignment:
Q  147 atggttgaaaataacactttacatatttatgtccgatccattgaaatgtaatatttattaacttgtaatatcgtaatttgttcgaa 232  Q
    |||||| |||||||   ||||||| |||||||  ||||||||||| |||||||| ||||||| | |||||  ||||| ||||||||    
T  29671294 atggttaaaaataaatttttacatctttatgtttgatccattgaagtgtaatatatattaacgtataatagtgtaatgtgttcgaa 29671379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 203
Target Start/End: Complemental strand, 27187816 - 27187760
Alignment:
Q  147 atggttgaaaataacactttacatatttatgtccgatccattgaaatgtaatattta 203  Q
    |||||||||||||||| ||||| | ||||||| ||||||||| || | |||||||||    
T  27187816 atggttgaaaataacattttacgtctttatgttcgatccattaaagtctaatattta 27187760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 106
Target Start/End: Original strand, 32076265 - 32076348
Alignment:
Q  22 gtgatgtaatagtagatgtgccagacatggacttggggggaggataagaaagagaacttttagaagatcgtgtattttccacaac 106  Q
    ||||||| |||||| ||||||||  | |||||||||||| || ||||| ||||| ||||||||||||  ||||||| | ||||||    
T  32076265 gtgatgtgatagtaaatgtgccatccgtggacttggggg-agaataaggaagaggacttttagaagactgtgtattattcacaac 32076348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 4e-48; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 15 - 239
Target Start/End: Original strand, 35004162 - 35004386
Alignment:
Q  15 agaatatgtgatgtaatagtagatgtgccagacatggacttggggggaggataagaaagagaacttttagaagatcgtgtattttccacaacttgtcgaa 114  Q
    |||| |||| ||||| ||||| | |||||||   |||||||||||| |||||||| ||||  |||||| ||||| |||||||||| ||||||||||| ||    
T  35004162 agaacatgttatgtagtagtacaagtgccaggagtggacttggggg-aggataaggaagaagacttttggaagaccgtgtatttttcacaacttgtcaaa 35004260  T
Q  115 gaagat-gcgacgatgattacatgtttcacgtgatggttgaaaataacactttacatatttatgtccgatccattgaaatgtaatatttattaacttgta 213  Q
     | ||| |||||| |||||||||||||| |||||||||||| ||||||| | ||||| |||||||||||||  ||||| |||||||||||||||| ||||    
T  35004261 tatgatagcgacgttgattacatgtttcgcgtgatggttgagaataacattctacatctttatgtccgatctgttgaagtgtaatatttattaacgtgta 35004360  T
Q  214 atatcgtaatttgttcgaatttgtgt 239  Q
    |||||||||||| |||||||||||||    
T  35004361 atatcgtaatttattcgaatttgtgt 35004386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 57 - 357
Target Start/End: Original strand, 19379557 - 19379866
Alignment:
Q  57 gggggaggataagaaagagaacttttagaagatcgtgtattttccacaacttgtcgaagaagat-gcgacgatgattacatgtttcacgtgatggttgaa 155  Q
    ||||||||||||| ||||  ||  || ||||| |||||||||||||||||| ||| |||| ||| | |||| |||||||||||||| ||||||| |||||    
T  19379557 gggggaggataaggaagatgaccgttggaagaccgtgtattttccacaactagtcaaagatgatagtgacgttgattacatgtttcgcgtgatgcttgaa 19379656  T
Q  156 aataacactttacatatttatgtccgatccattgaaatgtaatatttattaacttgtaatatcgtaat-ttgttcgaatttgtgttcatattgttg---- 250  Q
    ||||||  ||||||| |||||||||||||| ||||| ||||| |||| ||||| |||||||  ||||| || | |||||||||||   ||||||||        
T  19379657 aataaccttttacatctttatgtccgatccgttgaagtgtaacattttttaacgtgtaatagtgtaatattttccgaatttgtgtctgtattgttgaatt 19379756  T
Q  251 ---atgaatttgtgtttatgtaatttaacaataaatttggttaatttttaccgtttaggtaagattatgtaattttcgaaatgtatggataaattgatgt 347  Q
       ||||||||||||| |||||||||||| || ||||||| ||||||| |||||||  || ||||||||||||||| ||||| |||||| |||||  |||    
T  19379757 ttaatgaatttgtgttgatgtaatttaacgatgaatttgggtaattttgaccgtttgtgtgagattatgtaattttagaaatttatggacaaatttgtgt 19379856  T
Q  348 aatttagatc 357  Q
    ||||| ||||    
T  19379857 aatttggatc 19379866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 22 - 377
Target Start/End: Complemental strand, 26224882 - 26224520
Alignment:
Q  22 gtgatgtaatagtagatgtgccagacatggacttggggggaggataagaaagagaacttttagaagatcgtgtattttccacaacttgtcgaagaagat- 120  Q
    ||||||| |||||| ||||| ||| | |||||||||| | |||||||| ||||| |||||| ||||| | ||||||||| | ||||||||||||| |||     
T  26224882 gtgatgtgatagtaaatgtgtcaggcgtggacttgggag-aggataaggaagaggacttttggaagaccttgtattttctagaacttgtcgaagatgata 26224784  T
Q  121 gcgacgatgattacatgtttcacgtgatggttgaaaataacactttacatatttatgtccgatccattgaaatgtaatatttattaacttgtaatatcgt 220  Q
    | |||| |||||||||||||    | |||||||| ||| |||||||  || ||| |||||||||| ||||| |||| ||||| || |  ||||| |  ||    
T  26224783 gtgacgttgattacatgtttaggttcatggttgagaattacactttgtatctttttgtccgatccgttgaagtgtagtatttgtttaagtgtaacagtgt 26224684  T
Q  221 aatttgttc-gaatttgtgttcatattgttga-------tgaatttgtgtttatgtaatttaacaataaatttggttaatttttaccgtttaggtaagat 312  Q
    ||| | ||| ||||||||||   |||||||||       |||||||||||||||||||||||||||| ||||||| ||||||| ||| |||| || ||||    
T  26224683 aatattttctgaatttgtgtctgtattgttgaattttaatgaatttgtgtttatgtaatttaacaatgaatttgggtaattttgacc-tttatgtgagat 26224585  T
Q  313 tatgtaattttcgaaatgtatggataaattgatgtaatttagatcatttacgtgttattaagtgt 377  Q
    |||||| ||||  |||| |||||| |||||| |||||||| |||| ||||||||| |||||||||    
T  26224584 tatgtatttttataaatttatggacaaattggtgtaatttggatcgtttacgtgtcattaagtgt 26224520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 57 - 251
Target Start/End: Complemental strand, 22728535 - 22728340
Alignment:
Q  57 gggggaggataagaaagagaacttttagaagatcgtgtattttccacaacttgtcgaagaagat-gcgacgatgattacatgtttcacgtgatggttgaa 155  Q
    ||||||||| ||| ||||| |||||| |||||  ||||||||||||| |||| || |||| ||| || | | ||||  |||||||  | | ||  |||||    
T  22728535 gggggaggagaaggaagaggacttttggaagactgtgtattttccactacttctcaaagatgatagcaatgttgatgtcatgtttagcctaattattgaa 22728436  T
Q  156 aataacactttacatatttatgtccgatccattgaaatgtaatatttattaacttgtaatatcgtaatttgttcgaatttgtgttcatattgttga 251  Q
    ||||||| ||||||| |||||||||||||| ||||| |||||||||||||||| |||||||| ||| ||||||||||||||||||| |||| ||||    
T  22728435 aataacattttacatctttatgtccgatccgttgaagtgtaatatttattaacgtgtaatattgtattttgttcgaatttgtgttcgtatttttga 22728340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 22 - 377
Target Start/End: Complemental strand, 9827427 - 9827065
Alignment:
Q  22 gtgatgtaatagtagatgtgccagacatggacttggggggaggataagaaagagaacttttagaagatcgtgtattttccacaacttgtcgaagaagat- 120  Q
    ||||||| |||||| ||||| ||| | |||||||||||  |||||||| ||||  |||| | |||||  ||||||| || ||||||| || |||| |||     
T  9827427 gtgatgtcatagtaaatgtgtcaggcgtggacttggggc-aggataaggaagaagacttctggaagactgtgtattatcaacaacttctcaaagatgata 9827329  T
Q  121 gcgacgatgattacatgtttcacgtgatggttgaaaataacactttacatatttatgtccgatccattgaaatgtaatatttattaacttgtaatatcgt 220  Q
    |||||| |||||||||||||    | |||||||| |||||||||||  || ||| |||||||||| ||||| ||||||||| ||| |  |||||||  ||    
T  9827328 gcgacgttgattacatgtttaggttaatggttgagaataacactttgtatctttttgtccgatccgttgaagtgtaatattaatttaagtgtaatagtgt 9827229  T
Q  221 aatttgttc-gaatttgtgttcatattgttga-------tgaatttgtgtttatgtaatttaacaataaatttggttaatttttaccgtttaggtaagat 312  Q
    ||| | ||| ||||||||||   |||||||||       |||||||||| |||||||||||||| || ||||||| |||  || || ||||| || ||||    
T  9827228 aatgttttccgaatttgtgtatgtattgttgaattttaatgaatttgtgcttatgtaatttaacgatgaatttgggtaaaattgactgtttatgttagat 9827129  T
Q  313 tatgtaattttcgaaatgtatggataaattgatgtaatttagatcatttacgtgttattaagtgt 377  Q
    ||| | ||||| ||||| |||||| |||||  |||||||| |||| |||||||| ||||||||||    
T  9827128 tatatcattttagaaatttatggacaaatttgtgtaatttggatcgtttacgtg-tattaagtgt 9827065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 85 - 239
Target Start/End: Original strand, 28758867 - 28759022
Alignment:
Q  85 aagatcgtgtattttccacaacttgtcgaagaagat-gcgacgatgattacatgtttcacgtga-tggttgaaaataacactttacatatttatgtccga 182  Q
    |||| |||||||| |||||||||| || |||| ||| |||||| ||||||||||||| | || | |||||||  |||||||||||||| |||||||| ||    
T  28758867 aagaccgtgtattatccacaacttctcaaagatgatagcgacgttgattacatgttt-aggtaaatggttgaggataacactttacatctttatgtctga 28758965  T
Q  183 tccattgaaatgtaatatttattaacttgtaatatcgtaatttgttcgaatttgtgt 239  Q
    ||| ||||| ||||||||| || ||| |||||||   |||| |||||||||||||||    
T  28758966 tccgttgaagtgtaatattaatgaacgtgtaatagtataatgtgttcgaatttgtgt 28759022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 147 - 208
Target Start/End: Original strand, 36342451 - 36342512
Alignment:
Q  147 atggttgaaaataacactttacatatttatgtccgatccattgaaatgtaatatttattaac 208  Q
    |||||| |||||||||  |||||| ||| ||| | |||||||||||||||||||||||||||    
T  36342451 atggttaaaaataacatattacatctttgtgttctatccattgaaatgtaatatttattaac 36342512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 343
Target Start/End: Original strand, 35004416 - 35004478
Alignment:
Q  281 aatttggttaatttttaccgtttaggtaagattatgtaattttcgaaatgtatggataaattg 343  Q
    ||||||| ||||||| |||||||| || | ||||||||||||| ||||| |||||| ||||||    
T  35004416 aatttgggtaattttgaccgtttatgtgatattatgtaattttagaaatttatggacaaattg 35004478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 325 - 373
Target Start/End: Complemental strand, 22728304 - 22728256
Alignment:
Q  325 gaaatgtatggataaattgatgtaatttagatcatttacgtgttattaa 373  Q
    ||||| |||||| |||||| |||||||| |||||||||||||| |||||    
T  22728304 gaaatttatggacaaattggtgtaatttggatcatttacgtgtcattaa 22728256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 6e-47; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 57 - 239
Target Start/End: Complemental strand, 20514350 - 20514167
Alignment:
Q  57 gggggaggataagaaagagaacttttagaagatcgtgtattttccacaacttgtcgaagaagat-gcgacgatgattacatgtttcacgtgatggttgaa 155  Q
    ||||||||||||  ||||| ||  || ||||| ||||| |||||||||||| ||| |||| ||| |||||| |||||| ||||||| |||||||||||||    
T  20514350 gggggaggataatgaagaggaccgttggaagaccgtgttttttccacaactagtcaaagatgatagcgacgttgattatatgtttcgcgtgatggttgaa 20514251  T
Q  156 aataacactttacatatttatgtccgatccattgaaatgtaatatttattaacttgtaatatcgtaatttgttcgaatttgtgt 239  Q
    ||||||  |||||||||||| ||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  20514250 aataaccttttacatatttacgtcagatccattgaagtgtaatatttattaacgtgtaatatcgtaatttgttcgaatttgtgt 20514167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 63 - 317
Target Start/End: Original strand, 27934175 - 27934437
Alignment:
Q  63 ggataagaaagagaacttttagaagatcgtgtattttccacaacttgtcgaagaagat-gcgacgatgattacatgtttcacgtgatggttgaaaataac 161  Q
    ||||||| || || |||||| ||||| | | ||||||||||||||||||||||| ||| |||||| || ||||||||||  |||||||||||||||||||    
T  27934175 ggataaggaaaaggacttttggaagaccatatattttccacaacttgtcgaagatgatagcgacgttgcttacatgtttagcgtgatggttgaaaataac 27934274  T
Q  162 actttacatatttatgtccgatccattgaaatgta--atatttattaacttgtaatatcgtaatttgttcgaatttgtgttcatattgttg-------at 252  Q
    ||||||||| |||||||| |||||  |||| ||||  |||||||||||  |||||||  ||||| ||||| |||||||||   ||||||||       ||    
T  27934275 actttacatctttatgtctgatcccgtgaagtgtaatatatttattaatgtgtaatagtgtaatgtgttcaaatttgtgtctgtattgttgaattttaat 27934374  T
Q  253 gaatttgtgtttatgtaatttaacaataaatttggttaatttttaccgtttaggtaagattatgt 317  Q
    |||||||||||||| ||||||||| || |||||  ||| ||||| ||||||| || | |||||||    
T  27934375 gaatttgtgtttatttaatttaacgatgaattt--ttactttttgccgtttatgtgacattatgt 27934437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 251 - 377
Target Start/End: Original strand, 54336304 - 54336430
Alignment:
Q  251 atgaatttgtgtttatgtaatttaacaataaatttggttaatttttaccgtttaggtaagattatgtaattttcgaaatgtatggataaattgatgtaat 350  Q
    |||||||||||||||||||||||||| || ||||||  | |||||  ||||||| || ||||||||||||||| ||||| |||||  |||||  ||||||    
T  54336304 atgaatttgtgtttatgtaatttaacgatgaatttgagtcattttgtccgtttatgtgagattatgtaattttagaaatttatggtcaaatttgtgtaat 54336403  T
Q  351 ttagatcatttacgtgttattaagtgt 377  Q
    || |||| ||||||||| |||||||||    
T  54336404 ttggatcgtttacgtgtcattaagtgt 54336430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 147 - 240
Target Start/End: Original strand, 30531251 - 30531344
Alignment:
Q  147 atggttgaaaataacactttacatatttatgtccgatccattgaaatgtaatatttattaacttgtaatatcgtaatttgttcgaatttgtgtt 240  Q
    |||||||||||||||| ||||||| |||||||||||||| ||||| ||||||||||||| || |||||||  ||||| |||| |||||| ||||    
T  30531251 atggttgaaaataacattttacatctttatgtccgatccgttgaagtgtaatatttatttacgtgtaatagtgtaatgtgtttgaatttatgtt 30531344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 30 - 273
Target Start/End: Original strand, 53768197 - 53768448
Alignment:
Q  30 atagtagatgtgccagacatggacttggggggaggataagaaagagaacttttagaagatcgtgtattttccacaacttgtcgaagaagat-gcgacgat 128  Q
    |||||| ||||| ||| | |||||||||||| |||||||| ||||| |||| | |||||   |||||| |||||||||| || |||| ||| | |||| |    
T  53768197 atagtaaatgtgtcaggcctggacttggggg-aggataaggaagaggacttatggaagacattgtattatccacaacttctcaaagatgatagtgacgtt 53768295  T
Q  129 gattacatgtttcacgtgatggttgaaaataacactttacatatttatgtccgatccattgaaatgtaatatttattaacttgtaatatcgtaat-ttgt 227  Q
    |||| ||||||    || |||||||| |||||||||||  || ||| |||||||||| ||||| ||||||  ||||| |  |||||||  ||||| || |    
T  53768296 gatttcatgttaagggtaatggttgagaataacactttgtatctttttgtccgatccgttgaactgtaatcattatttaagtgtaatagtgtaatgtttt 53768395  T
Q  228 tcgaatttgtgttcatattgttg-------atgaatttgtgtttatgtaattt 273  Q
     ||||||||||||  ||||||||       |||||||||||||||||||||||    
T  53768396 ccgaatttgtgtttgtattgttgaattttaatgaatttgtgtttatgtaattt 53768448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 22 - 367
Target Start/End: Original strand, 32916 - 33269
Alignment:
Q  22 gtgatgtaatagtagatgtgccagacatggacttggggggaggataagaaagagaacttttagaagatcgtgtattttccacaacttgtcgaagaagat- 120  Q
    ||||||| ||| || ||||| ||| |||||||||||||| |||||||| ||||  ||||   ||||| |||||||| ||||||| || || |||| |||     
T  32916 gtgatgtcatattaaatgtgtcaggcatggacttggggg-aggataaggaagaagacttcaggaagaccgtgtattatccacaatttttcaaagacgata 33014  T
Q  121 gcgacgatgattacatgtttcacgtgatggttgaaaataacactttacatatttatgtccgatccattgaaatgtaatatttattaacttgtaatatcgt 220  Q
    |||||| |||||||||||||    | || ||||| |||||||||||  || ||| |||||||||  ||| | |||||| |||||| |  |||||||  ||    
T  33015 gcgacgttgattacatgtttaggttaatagttgagaataacactttgtatctttttgtccgatctgttgtagtgtaatttttatttaagtgtaatagtgt 33114  T
Q  221 aatttgttc-gaatttgtgttcatattgttgat-------gaatttgtgtttatgtaatttaacaataaatttggttaatttttaccgtttaggtaagat 312  Q
    ||| | ||| |||||| | | | ||||||||||       |||| ||||||||||||||||||| || ||||||| ||||||| |||||||| || ||||    
T  33115 aatgttttccgaatttatatccgtattgttgatttttaatgaatatgtgtttatgtaatttaacgatgaatttgggtaattttgaccgtttatgtgagat 33214  T
Q  313 tatgtaattttcgaaatgtatggataaattgatgtaatttagatcatttacgtgt 367  Q
    ||||||||||| ||||| |||||| |||||  |||||||| |||| |||||||||    
T  33215 tatgtaattttagaaatttatggacaaatttgtgtaatttggatcgtttacgtgt 33269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 147 - 244
Target Start/End: Complemental strand, 45801 - 45704
Alignment:
Q  147 atggttgaaaataacactttacatatttatgtccgatccattgaaatgtaatatttattaacttgtaatatcgtaatttgttcgaatttgtgttcata 244  Q
    |||||||||||||||| ||||||| ||| |||||| ||||||||| |||||||| |||| || |||||||  ||||| ||||||||||||||| ||||    
T  45801 atggttgaaaataacattttacatctttgtgtccgctccattgaagtgtaatatgtattgacgtgtaatagtgtaatatgttcgaatttgtgtccata 45704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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