View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10759_low_7 (Length: 361)
Name: NF10759_low_7
Description: NF10759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10759_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 23 - 352
Target Start/End: Complemental strand, 5602170 - 5601842
Alignment:
| Q |
23 |
agcggcactactaatatgtacatatatgtcctatatttaaaccataagactccttcatgttatatactaatattttgagttgaattctcctcgtgcttaa |
122 |
Q |
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| T |
5602170 |
agcggcactactaatatgtacatatatgtcctatatttaaaccataagactccttcatgttatatactaatattttgagttgaactctcctcgtgcttaa |
5602071 |
T |
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| Q |
123 |
gtcttaacaatgtatatccacaaatgagtacataacagttagatacgtatattgaggaaaatgtattgcagttatggcctactaatcaannnnnnngtca |
222 |
Q |
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| T |
5602070 |
gtcttaacaatgtatatccacaaatgagtacataacagttagatacgtatattgaggaaaatgtattgcagttatggcctactaatcaa-ttttttgtca |
5601972 |
T |
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| Q |
223 |
cgctccaactctaaagtctatataggtaggcacatggacatggtacacatacattcaatatattccatcaaactgcactcacaagtcaccacccatcttc |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5601971 |
cgctccaactctaaagtctatataggtaggcacatggacatggtacacatacattcaatatattccatcaaactgcactcacaagtcaccacccatcttc |
5601872 |
T |
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| Q |
323 |
cccttgtgatcccatgagtggcccctttgc |
352 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
5601871 |
cccttgtgatcccatgagtggcccctttgc |
5601842 |
T |
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