View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10759_low_8 (Length: 347)
Name: NF10759_low_8
Description: NF10759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10759_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 50 - 333
Target Start/End: Original strand, 6992936 - 6993223
Alignment:
| Q |
50 |
aaaatggatcacattcacatat----acatgattaagtaggtaaattcaagccattgtatagtagtagatgcctaaaagtggaccaatcattggctgttt |
145 |
Q |
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| T |
6992936 |
aaaatggatcacattcacatatatatacatgattaagtaggtaaattcaagccattgtatagtagtagatgcctaaaagtggaccaatcattggctgttt |
6993035 |
T |
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| Q |
146 |
acttgtaaaaatcatttgatagcggcacaattcatgcccaaatctgcatatatatgtaaattattattgttataatctggtaccatagtgaaagtggtta |
245 |
Q |
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| T |
6993036 |
acttgtaaaaatcatttgatagcggcacaattcatgcccaaatctgcacatatatgtaaattattatggttataatctggcaccatagtgaaagtggtta |
6993135 |
T |
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| Q |
246 |
atttgtttgcaagcaatccaattattggatttaagaattaatattttaatcaattttaaatagagaagatacacatttgagagcgacc |
333 |
Q |
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| T |
6993136 |
atttgtttgcaagcaatccaattattggatttaagaattaatattttaatcaattttaaatagagaagatacacatttgagagcgacc |
6993223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 49
Target Start/End: Original strand, 6992492 - 6992523
Alignment:
| Q |
18 |
ggttaggcattatcaaggacaatgcactaagg |
49 |
Q |
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| T |
6992492 |
ggttaggcattatcaaggacaatgcactaagg |
6992523 |
T |
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