View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10759_low_9 (Length: 342)
Name: NF10759_low_9
Description: NF10759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10759_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 16 - 332
Target Start/End: Complemental strand, 16308952 - 16308636
Alignment:
| Q |
16 |
cataattgatatttctgttctggccgtttctcatattcatgtaagtgtttacatagagagagggattacattagatatgccgcaaaatccaaaaatcgcc |
115 |
Q |
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| T |
16308952 |
cataattgatatttctgttctggccgtttctcatattcctgtaagtgtttacatagagagagggattacattagatatgccgcaaaatccaaaaatcgcc |
16308853 |
T |
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| Q |
116 |
ttcatgtttttgactcctggttctttaccatttgagaaattgtgggataacttcttccaagtaaggattgtttgttacctatctaatctattattttgaa |
215 |
Q |
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| T |
16308852 |
ttcatgtttttgactcctggttctttaccatttgagaaattgtgggataacttcttccaagtaaggattgtttgttacctatctaatctattattttgaa |
16308753 |
T |
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| Q |
216 |
ttcaatatttgaaccatgtaatgttaatttgcatgaagagagtaagaggcaacgagaagcttctgaattattaatgcttctttcttttctggtagggtca |
315 |
Q |
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| T |
16308752 |
ttcaatatttgaaccatgtaatgttaatttgcatgaagagagtaagaggcaacgagaagcttctgaattattaatgcttctttcttttctggtagggtca |
16308653 |
T |
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| Q |
316 |
tgaagggaagttctctg |
332 |
Q |
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| T |
16308652 |
tgaagggaagttctctg |
16308636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 91 - 187
Target Start/End: Complemental strand, 16300451 - 16300355
Alignment:
| Q |
91 |
tatgccgcaaaatccaaaaatcgccttcatgtttttgactcctggttctttaccatttgagaaattgtgggataacttcttccaagtaaggattgtt |
187 |
Q |
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| T |
16300451 |
tatgccaccaaatccaaaagtcgccttcatgtttttgactcctggttctctaccatttgaaaaattgtgggataactttttccaagtaaggattgtt |
16300355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 273 - 330
Target Start/End: Complemental strand, 16299342 - 16299285
Alignment:
| Q |
273 |
agcttctgaattattaatgcttctttcttttctggtagggtcatgaagggaagttctc |
330 |
Q |
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| T |
16299342 |
agcttctgagttattgatgcttttttcttttctggtagggtcatgaggggaagttctc |
16299285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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