View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10760_high_11 (Length: 239)
Name: NF10760_high_11
Description: NF10760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10760_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 40626840 - 40626615
Alignment:
| Q |
1 |
attgaattccatattttctacaaatcaagcgcaccctcgctcacttttgatataacgcttcgtccaccctttcaaaaatatgttcgaaagtatttttaga |
100 |
Q |
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| T |
40626840 |
attgaattccatattttctacaaatcaagcgcatcctcgctcacttttgatataacgctttgtccaccctttcaaaaatatgttcgaaagtatttttaga |
40626741 |
T |
|
| Q |
101 |
cagtaaacagtgttttgaagacattcgttagcatttccctagtttacaaaacgttgggaaagtagctccc--nnnnnnnnttcacacaacacactaatat |
198 |
Q |
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||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
40626740 |
cagtaaacattgttttgaagatattcgttagcatttctctagtttacaaaacgttgggaaagtagctcccaaaaaaaaaaatcacacagcacactaatat |
40626641 |
T |
|
| Q |
199 |
gattttcttaaacgatggttcataat |
224 |
Q |
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|||||||||||||||||||||||||| |
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| T |
40626640 |
gattttcttaaacgatggttcataat |
40626615 |
T |
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