View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10760_high_13 (Length: 218)
Name: NF10760_high_13
Description: NF10760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10760_high_13 |
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| [»] scaffold0294 (1 HSPs) |
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Alignment Details
Target: scaffold0294 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 20948 - 21147
Alignment:
| Q |
1 |
tagaacattttagtgccaaagatggtcatgatagttggttttgtgacaatatcaataaggcacatcttgattacttttattggctacttgctggattaag |
100 |
Q |
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| T |
20948 |
tagaacattttagtgccaaagatggtcatgatagttggttttgtgacaatatcaataaggcacatcttgattacttttattggctacttgctggattaag |
21047 |
T |
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| Q |
101 |
tgtcatggggtttactttgtttatttactttgcaaaatcttacatttataaccacaaaggtatcatcacacaaggatagtcattgattagattttgtatt |
200 |
Q |
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| T |
21048 |
tgtcatggggtttactttgtttatttactttgcaaaatcttacatttataaccacaaaggtatcatcacacaaggatagtcattgattagtttttgtatt |
21147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 154; Significance: 7e-82; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 11792840 - 11793037
Alignment:
| Q |
1 |
tagaacattttagtgccaaagatggtcatgatagttggttttgtgacaatatcaataaggcacatcttgattacttttattggctacttgctggattaag |
100 |
Q |
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|||||||||||| || ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
11792840 |
tagaacattttactggcaaagatggtcatgaaacttggttttgtgacaatatcaataaggcacatcttgattacttttattggatacttgctggattaag |
11792939 |
T |
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| Q |
101 |
tgtcatggggtttactttgtttatttactttgcaaaatcttacatttataaccacaaaggtatcatcacacaaggatagtcattgattagattttgta |
198 |
Q |
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| T |
11792940 |
tgtcatggggtttactttgttcatttactttgcaaaatcttacatttataatcacaaaggtatcatctcataaggatagacattgattagtttttgta |
11793037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 11789533 - 11789711
Alignment:
| Q |
1 |
tagaacattttagtgccaaagatggtcatgatagttggttttgtgacaatatcaataaggcacatcttgattacttttattggctacttgctggattaag |
100 |
Q |
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||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
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| T |
11789533 |
tagaacattttagtggcaaagatggacatgatagttggttttgtgacaatatcaataagacacatcttgattacttttattggctactttctggattaag |
11789632 |
T |
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| Q |
101 |
tgtcatggggtttactttgtttatttactttgcaaaatcttacatttataaccacaaaggtatcatcacacaaggatag |
179 |
Q |
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| T |
11789633 |
tgtcattgggtttactttgttcatttactttgcaaaatcttacatttataatcataaaggtgtcatcacacaaggatag |
11789711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 11699705 - 11699886
Alignment:
| Q |
1 |
tagaacattttagtgccaaagatggtcatgatagttggttttgtgacaatatcaataaggcacatcttgattacttttattggctacttgctggattaag |
100 |
Q |
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|||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
11699705 |
tagaacattttactggcaaagatggtcatgaaagttggttttgtgacaatatcaataaggcacatcttgattacttttattggttacttgctggattaag |
11699804 |
T |
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| Q |
101 |
tgtcatggggtttactttgtttatttactttgcaaaatcttacatttataaccacaaaggtatcatcacacaaggatagtca |
182 |
Q |
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||| | ||||||||||||||| |||||||||||||||||||||||||||| || ||| || |||||||||||||||||||| |
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| T |
11699805 |
tgtgttagggtttactttgtttgtttactttgcaaaatcttacatttataatcataaaagtgtcatcacacaaggatagtca |
11699886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 11678520 - 11678719
Alignment:
| Q |
1 |
tagaacattttagtgccaaagatggtcatgatagttggttttgtgacaatatcaataaggcacatcttgattacttttattggctacttgctggattaag |
100 |
Q |
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||||||||||||||| ||||||||| ||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||| |
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| T |
11678520 |
tagaacattttagtggcaaagatggacatgaaacttggttttgtgacaatatcaataaggcacattttgattacttttattggttgcttgctggattaag |
11678619 |
T |
|
| Q |
101 |
tgtcatggggtttactttgtttatttactttgcaaaatcttacatttataaccacaaaggtatcatcacacaaggatagtcattgattagattttgtatt |
200 |
Q |
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| | ||||||||||||||||| |||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||| |||| |||| |
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| T |
11678620 |
tttgatggggtttactttgttcgtttactttgcaaaatcttacatttataatcacaaaggcagtgtcacacaaggatagtcattgattagtttttctatt |
11678719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 11686799 - 11686998
Alignment:
| Q |
1 |
tagaacattttagtgccaaagatggtcatgatagttggttttgtgacaatatcaataaggcacatcttgattacttttattggctacttgctggattaag |
100 |
Q |
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||||||||||||||| ||||||||| ||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||| |
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| T |
11686799 |
tagaacattttagtggcaaagatggacatgaaacttggttttgtgacaatatcaataaggcacattttgattacttttattggttgcttgctggattaag |
11686898 |
T |
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| Q |
101 |
tgtcatggggtttactttgtttatttactttgcaaaatcttacatttataaccacaaaggtatcatcacacaaggatagtcattgattagattttgtatt |
200 |
Q |
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| | ||||||||||||||||| |||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||| |||| |||| |
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| T |
11686899 |
tttgatggggtttactttgttcgtttactttgcaaaatcttacatttataatcacaaaggcagtgtcacacaaggatagtcattgattagtttttctatt |
11686998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 11709158 - 11709258
Alignment:
| Q |
1 |
tagaacattttagtgccaaagatggtcatgatagttggttttgtgacaatatcaataaggcacatcttgattacttttattggctacttgctggattaag |
100 |
Q |
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||||||||||||||| ||||||||| ||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||| |
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| T |
11709158 |
tagaacattttagtggcaaagatggacatgaaacttggttttgtgacaatatcaataaggcacattttgattacttttattggttgcttgctggattaag |
11709257 |
T |
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| Q |
101 |
t |
101 |
Q |
| |
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| |
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| T |
11709258 |
t |
11709258 |
T |
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