View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10760_high_2 (Length: 308)
Name: NF10760_high_2
Description: NF10760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10760_high_2 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 14 - 308
Target Start/End: Complemental strand, 36809145 - 36808855
Alignment:
| Q |
14 |
atcataatgaatactacaactcttaatgataaagagttcggtaaagtaactctccatatatgcacatcacaccagctagagctaagagtctaagacaaac |
113 |
Q |
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||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36809145 |
atcataatgaatactacaactcttaatgataaaaagttgggtaaagtaactctccatatatgcacatcacaccagctagagctaagagtctaagacaaac |
36809046 |
T |
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| Q |
114 |
aacatacatcagttcaagagctaaaacaagctatactaggaacatcccaaagtttaagtgtacaccaatgaccaaccaaaaaatactcaatcatatcctg |
213 |
Q |
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| T |
36809045 |
aacatacatcagttcaagagctaaaacaagcta--ctaggaacatcccaaagtttaagt--acaccaatgaccaaccaaaaaatactcaatcatatcctg |
36808950 |
T |
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| Q |
214 |
aaatattaatccaagtgttgtatactcagtaatcagaccagcatatttgaagcaaccacaatatcatacatctagccatagccattttgattctc |
308 |
Q |
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| T |
36808949 |
aaatattaatccaagtgttgtatactcggtaatcagaccagcatatttgaagcaaccacaatatcatacatctagccatagccattttgattctc |
36808855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 96 - 196
Target Start/End: Original strand, 36509735 - 36509831
Alignment:
| Q |
96 |
taagagtctaagacaaacaacatacatcagttcaagagctaaaacaagctatactaggaacatcccaaagtttaagtgtacaccaatgaccaaccaaaaa |
195 |
Q |
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||||||||||||||||||||||||||| |||| |||||||||||||||||| |||| ||||||| |||||||||||||||||||||| | ||||||||| |
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| T |
36509735 |
taagagtctaagacaaacaacatacattagtt-aagagctaaaacaagcta--ctag-aacatccaaaagtttaagtgtacaccaatggcaaaccaaaaa |
36509830 |
T |
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