View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10760_high_3 (Length: 269)

Name: NF10760_high_3
Description: NF10760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10760_high_3
NF10760_high_3
[»] chr6 (20 HSPs)
chr6 (104-236)||(26595400-26595532)
chr6 (104-238)||(22079449-22079583)
chr6 (152-236)||(16199549-16199633)
chr6 (104-236)||(277042-277174)
chr6 (117-237)||(5694038-5694158)
chr6 (118-221)||(3853210-3853313)
chr6 (117-236)||(32316816-32316935)
chr6 (117-237)||(552857-552977)
chr6 (105-236)||(13689882-13690013)
chr6 (123-236)||(30457575-30457688)
chr6 (123-239)||(14818002-14818118)
chr6 (104-228)||(18737463-18737587)
chr6 (117-236)||(15974672-15974791)
chr6 (117-236)||(24900838-24900957)
chr6 (152-214)||(11014900-11014962)
chr6 (104-240)||(17551263-17551398)
chr6 (145-233)||(30423443-30423531)
chr6 (152-236)||(33430250-33430334)
chr6 (117-236)||(1156784-1156903)
chr6 (145-236)||(4820459-4820550)
[»] chr8 (24 HSPs)
chr8 (104-236)||(37133750-37133882)
chr8 (123-236)||(29025330-29025443)
chr8 (104-236)||(11253430-11253562)
chr8 (104-244)||(36660330-36660470)
chr8 (115-237)||(23754593-23754715)
chr8 (115-188)||(10731608-10731681)
chr8 (119-236)||(13244272-13244389)
chr8 (114-182)||(44596351-44596419)
chr8 (104-187)||(10902756-10902839)
chr8 (104-233)||(32501087-32501216)
chr8 (104-228)||(10839378-10839502)
chr8 (118-236)||(13106545-13106663)
chr8 (104-236)||(21526167-21526300)
chr8 (162-238)||(3381457-3381532)
chr8 (117-237)||(22719504-22719624)
chr8 (117-236)||(34186671-34186790)
chr8 (117-239)||(4054171-4054293)
chr8 (104-165)||(6440133-6440194)
chr8 (104-165)||(25830204-25830265)
chr8 (152-236)||(34796483-34796565)
chr8 (111-163)||(7795265-7795317)
chr8 (115-163)||(7814553-7814601)
chr8 (115-163)||(12655985-12656033)
chr8 (155-235)||(32133425-32133505)
[»] chr7 (28 HSPs)
chr7 (121-236)||(35072250-35072365)
chr7 (152-236)||(46022155-46022239)
chr7 (121-236)||(35098591-35098706)
chr7 (152-236)||(7701643-7701727)
chr7 (117-243)||(40417838-40417964)
chr7 (111-228)||(44649224-44649339)
chr7 (117-236)||(31445382-31445501)
chr7 (166-228)||(3614342-3614404)
chr7 (104-238)||(38956504-38956638)
chr7 (173-235)||(38944917-38944979)
chr7 (104-236)||(3937011-3937141)
chr7 (113-234)||(32803749-32803870)
chr7 (115-188)||(48062119-48062192)
chr7 (117-236)||(17002401-17002519)
chr7 (125-234)||(10700076-10700184)
chr7 (104-237)||(4292479-4292613)
chr7 (123-237)||(22918056-22918170)
chr7 (117-183)||(34507146-34507212)
chr7 (117-236)||(41189429-41189550)
chr7 (118-228)||(44895468-44895578)
chr7 (117-213)||(33578227-33578321)
chr7 (153-233)||(35207601-35207679)
chr7 (104-165)||(35822933-35822994)
chr7 (117-182)||(41018728-41018793)
chr7 (152-236)||(25192805-25192889)
chr7 (104-164)||(36352544-36352604)
chr7 (104-236)||(43025391-43025523)
chr7 (117-165)||(48145589-48145637)
[»] chr5 (32 HSPs)
chr5 (152-236)||(17626085-17626169)
chr5 (117-238)||(7287075-7287196)
chr5 (104-236)||(5168234-5168366)
chr5 (104-230)||(7076462-7076588)
chr5 (104-236)||(7552855-7552985)
chr5 (104-236)||(33037571-33037703)
chr5 (117-240)||(41321319-41321442)
chr5 (104-205)||(35567552-35567653)
chr5 (117-233)||(13309947-13310063)
chr5 (104-237)||(28306019-28306152)
chr5 (152-228)||(8686990-8687066)
chr5 (123-238)||(2972394-2972509)
chr5 (125-236)||(22972189-22972300)
chr5 (117-236)||(26791132-26791251)
chr5 (107-234)||(39054641-39054768)
chr5 (123-236)||(1274428-1274540)
chr5 (115-236)||(1671604-1671725)
chr5 (123-236)||(14051203-14051316)
chr5 (104-237)||(15479520-15479653)
chr5 (123-235)||(1764294-1764406)
chr5 (104-212)||(4719702-4719810)
chr5 (115-235)||(13168584-13168704)
chr5 (104-236)||(18258681-18258813)
chr5 (104-236)||(36738999-36739131)
chr5 (130-185)||(8097329-8097384)
chr5 (117-236)||(28467341-28467460)
chr5 (117-236)||(39591744-39591863)
chr5 (117-236)||(39592136-39592255)
chr5 (118-236)||(18660824-18660941)
chr5 (159-236)||(3565190-3565267)
chr5 (104-165)||(22098307-22098368)
chr5 (115-164)||(22529033-22529082)
[»] chr4 (47 HSPs)
chr4 (152-236)||(38382420-38382504)
chr4 (152-236)||(47181940-47182024)
chr4 (152-236)||(48402085-48402169)
chr4 (152-236)||(56363933-56364017)
chr4 (104-224)||(39478486-39478608)
chr4 (104-236)||(31641453-31641585)
chr4 (152-236)||(34616660-34616744)
chr4 (152-233)||(19473847-19473928)
chr4 (104-236)||(29175278-29175408)
chr4 (115-236)||(42853639-42853760)
chr4 (117-237)||(7632348-7632468)
chr4 (124-236)||(39440555-39440667)
chr4 (104-241)||(44539787-44539922)
chr4 (104-233)||(10250406-10250535)
chr4 (104-233)||(24575742-24575871)
chr4 (104-189)||(37997305-37997390)
chr4 (118-226)||(10474010-10474118)
chr4 (117-233)||(11068752-11068868)
chr4 (115-214)||(32130149-32130246)
chr4 (104-236)||(37297100-37297231)
chr4 (117-236)||(50721632-50721751)
chr4 (179-233)||(49449036-49449090)
chr4 (152-237)||(53801646-53801731)
chr4 (152-236)||(515533-515617)
chr4 (104-236)||(26732276-26732408)
chr4 (104-236)||(51986093-51986225)
chr4 (160-243)||(39606079-39606162)
chr4 (104-158)||(36123425-36123479)
chr4 (104-238)||(43175035-43175169)
chr4 (122-214)||(11672033-11672123)
chr4 (115-236)||(15175608-15175729)
chr4 (104-221)||(27354257-27354374)
chr4 (104-236)||(19232022-19232153)
chr4 (152-228)||(27050982-27051058)
chr4 (117-236)||(23369220-23369339)
chr4 (104-207)||(38380993-38381096)
chr4 (104-207)||(40348845-40348948)
chr4 (104-187)||(46634151-46634234)
chr4 (125-236)||(50831643-50831754)
chr4 (115-165)||(11546859-11546909)
chr4 (117-187)||(50608561-50608631)
chr4 (172-237)||(5233557-5233622)
chr4 (117-162)||(16019541-16019586)
chr4 (115-187)||(26908019-26908092)
chr4 (117-238)||(46213034-46213155)
chr4 (104-165)||(49585046-49585107)
chr4 (104-236)||(36177957-36178089)
[»] chr3 (53 HSPs)
chr3 (152-236)||(21217611-21217695)
chr3 (104-236)||(35376969-35377101)
chr3 (152-235)||(23592557-23592640)
chr3 (152-236)||(44383288-44383372)
chr3 (116-228)||(11630646-11630756)
chr3 (111-236)||(51982157-51982282)
chr3 (152-236)||(37056945-37057029)
chr3 (162-235)||(23600702-23600775)
chr3 (105-235)||(28539629-28539759)
chr3 (123-228)||(13348030-13348135)
chr3 (104-236)||(5114129-5114261)
chr3 (104-207)||(45711356-45711459)
chr3 (104-236)||(6178313-6178445)
chr3 (152-236)||(25641471-25641555)
chr3 (104-236)||(27541390-27541522)
chr3 (173-237)||(42997405-42997469)
chr3 (123-236)||(41309187-41309300)
chr3 (104-233)||(42358529-42358658)
chr3 (123-236)||(42889055-42889168)
chr3 (124-236)||(55151605-55151717)
chr3 (104-235)||(35597213-35597344)
chr3 (104-238)||(5244280-5244414)
chr3 (104-234)||(44463408-44463538)
chr3 (145-239)||(51465626-51465720)
chr3 (118-207)||(20547907-20547996)
chr3 (104-233)||(39629729-39629858)
chr3 (123-236)||(44856023-44856136)
chr3 (104-165)||(50314676-50314737)
chr3 (123-236)||(52939721-52939834)
chr3 (117-182)||(55361175-55361240)
chr3 (152-236)||(32924169-32924253)
chr3 (123-239)||(37503632-37503748)
chr3 (104-236)||(38926679-38926811)
chr3 (152-240)||(49086992-49087079)
chr3 (104-239)||(16969451-16969586)
chr3 (116-182)||(35299816-35299880)
chr3 (117-236)||(33939300-33939421)
chr3 (104-158)||(52714785-52714839)
chr3 (104-237)||(288777-288910)
chr3 (104-237)||(36670901-36671034)
chr3 (123-236)||(37302616-37302729)
chr3 (104-189)||(41505542-41505627)
chr3 (104-157)||(48353048-48353101)
chr3 (104-165)||(48944669-48944730)
chr3 (104-165)||(49761145-49761206)
chr3 (123-236)||(52254026-52254139)
chr3 (152-236)||(14226593-14226677)
chr3 (104-236)||(26014863-26014995)
chr3 (117-189)||(33791705-33791777)
chr3 (152-236)||(42356972-42357056)
chr3 (117-165)||(45186510-45186558)
chr3 (117-227)||(51305463-51305570)
chr3 (197-249)||(52326163-52326215)
[»] chr2 (37 HSPs)
chr2 (152-235)||(41056636-41056719)
chr2 (152-236)||(13333058-13333142)
chr2 (152-236)||(25270470-25270554)
chr2 (104-236)||(27490618-27490750)
chr2 (117-228)||(19642662-19642773)
chr2 (152-236)||(3097749-3097833)
chr2 (104-236)||(9647183-9647315)
chr2 (123-236)||(2076639-2076752)
chr2 (123-236)||(41195654-41195767)
chr2 (117-236)||(32477396-32477515)
chr2 (117-236)||(43487443-43487562)
chr2 (104-236)||(18254097-18254229)
chr2 (104-228)||(29349557-29349681)
chr2 (111-228)||(16973657-16973774)
chr2 (123-236)||(42421786-42421899)
chr2 (119-214)||(43075951-43076044)
chr2 (152-236)||(17767932-17768016)
chr2 (104-228)||(18846662-18846786)
chr2 (104-228)||(41042305-41042429)
chr2 (117-240)||(31414974-31415097)
chr2 (124-233)||(6049236-6049343)
chr2 (118-236)||(7663955-7664072)
chr2 (104-158)||(29449263-29449317)
chr2 (104-166)||(31548360-31548422)
chr2 (152-214)||(33273497-33273559)
chr2 (104-138)||(43658695-43658729)
chr2 (104-165)||(14328433-14328494)
chr2 (117-171)||(24766217-24766267)
chr2 (107-240)||(28494914-28495047)
chr2 (104-204)||(8427604-8427704)
chr2 (104-236)||(9194292-9194424)
chr2 (104-236)||(9760069-9760201)
chr2 (152-236)||(22888705-22888789)
chr2 (123-235)||(34944979-34945091)
chr2 (132-236)||(37737859-37737963)
chr2 (104-164)||(40700247-40700307)
chr2 (104-236)||(44977387-44977519)
[»] chr1 (41 HSPs)
chr1 (104-236)||(33100859-33100991)
chr1 (111-239)||(19947629-19947755)
chr1 (111-240)||(44519035-44519164)
chr1 (104-236)||(9566848-9566980)
chr1 (152-236)||(21401497-21401581)
chr1 (152-236)||(46907294-46907378)
chr1 (117-236)||(2269460-2269579)
chr1 (123-238)||(35369770-35369885)
chr1 (118-236)||(50149011-50149129)
chr1 (111-236)||(25672400-25672525)
chr1 (104-236)||(649820-649952)
chr1 (104-236)||(31088232-31088364)
chr1 (124-228)||(49647047-49647150)
chr1 (117-240)||(26469423-26469546)
chr1 (117-235)||(9988016-9988134)
chr1 (117-235)||(49065253-49065371)
chr1 (104-238)||(50726134-50726268)
chr1 (104-236)||(15082939-15083070)
chr1 (104-236)||(18434846-18434978)
chr1 (152-236)||(31827050-31827134)
chr1 (104-244)||(37619595-37619735)
chr1 (145-228)||(50932396-50932479)
chr1 (173-235)||(30570644-30570706)
chr1 (167-228)||(6809694-6809755)
chr1 (123-236)||(18512231-18512344)
chr1 (123-236)||(27464945-27465058)
chr1 (104-165)||(49446756-49446817)
chr1 (105-185)||(26208172-26208252)
chr1 (117-228)||(10627706-10627817)
chr1 (154-228)||(26020972-26021046)
chr1 (115-189)||(27533419-27533493)
chr1 (178-228)||(32915388-32915438)
chr1 (160-214)||(48103273-48103327)
chr1 (152-236)||(2571734-2571819)
chr1 (123-236)||(19055647-19055760)
chr1 (152-189)||(24981502-24981539)
chr1 (118-186)||(4776821-4776889)
chr1 (123-207)||(8828038-8828122)
chr1 (104-228)||(23645462-23645586)
chr1 (117-185)||(33076184-33076252)
chr1 (117-236)||(52576189-52576309)
[»] scaffold0519 (1 HSPs)
scaffold0519 (123-236)||(11852-11965)
[»] scaffold0087 (1 HSPs)
scaffold0087 (117-238)||(53247-53368)
[»] scaffold0199 (1 HSPs)
scaffold0199 (115-236)||(8730-8851)
[»] scaffold0098 (1 HSPs)
scaffold0098 (104-239)||(49346-49481)
[»] scaffold0056 (1 HSPs)
scaffold0056 (117-236)||(76507-76626)
[»] scaffold0041 (1 HSPs)
scaffold0041 (117-188)||(10899-10970)
[»] scaffold0002 (1 HSPs)
scaffold0002 (104-171)||(469590-469657)
[»] scaffold0053 (1 HSPs)
scaffold0053 (115-165)||(12560-12610)
[»] scaffold0013 (1 HSPs)
scaffold0013 (105-158)||(94847-94900)
[»] scaffold0007 (1 HSPs)
scaffold0007 (105-138)||(246713-246746)
[»] scaffold0687 (1 HSPs)
scaffold0687 (115-163)||(7122-7170)


Alignment Details
Target: chr6 (Bit Score: 69; Significance: 5e-31; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 104 - 236
Target Start/End: Original strand, 26595400 - 26595532
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagtt 203  Q
    |||||| ||| | ||||| |||||||||||||||||  || |||||  |||||||||||||| ||||| ||||| ||||||||||| |||||||||||||    
T  26595400 ctctcatactcacattatgtttttactttctctctctattgctttggtttttgtgtcaatacctcattttctttgtaaaattttggttgtttcaaaagtt 26595499  T
Q  204 gtcatataaatgaatgtttaaataatacaactc 236  Q
    |||||||||||| ||||| |||||| |||||||    
T  26595500 gtcatataaatggatgttcaaataacacaactc 26595532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 104 - 238
Target Start/End: Complemental strand, 22079583 - 22079449
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagtt 203  Q
    |||||||||| | ||||| |||||||||||||||||  || |||||| |||||||||||||| ||||| |||||  |||||||||| |||  |||||||     
T  22079583 ctctcacactcacattatgtttttactttctctctctattgctttgatttttgtgtcaatacatcattttctttgcaaaattttggttgtcacaaaagtg 22079484  T
Q  204 gtcatataaatgaatgtttaaataatacaactcat 238  Q
    ||||| |||||| ||||| |||||| |||||||||    
T  22079483 gtcatctaaatggatgttcaaataacacaactcat 22079449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 16199549 - 16199633
Alignment:
Q  152 ttttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgtttaaataatacaactc 236  Q
    |||||||||||||| ||||| ||||||||||||||||| ||| ||||||||||||||||||||| ||||| |||||| |||||||    
T  16199549 ttttgtgtcaatacctcattttctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactc 16199633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 104 - 236
Target Start/End: Original strand, 277042 - 277174
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagtt 203  Q
    |||||||| |||| |||| |||||| ||| ||||||  || |||||| |||||||||||||  ||||| ||||| ||||||||||| |||  ||||| ||    
T  277042 ctctcacatttatgttatgtttttaatttttctctctattgctttgatttttgtgtcaatatatcattttctttgtaaaattttggttgtcacaaaaatt 277141  T
Q  204 gtcatataaatgaatgtttaaataatacaactc 236  Q
    ||||| |||| |||||||||||||| |||||||    
T  277142 gtcatctaaaggaatgtttaaataacacaactc 277174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 117 - 237
Target Start/End: Complemental strand, 5694158 - 5694038
Alignment:
Q  117 attatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatga 216  Q
    ||||| |||||||||| ||||||  ||  ||||| |||||||||||||| |||||  |||| |||||||| || ||| ||||||||||||| ||| ||||    
T  5694158 attatgtttttactttttctctctattgttttgatttttgtgtcaatacctcatttcctttgtaaaatttaggttgtctcaaaagttgtcacatacatga 5694059  T
Q  217 atgtttaaataatacaactca 237  Q
    |||||||||||| ||||||||    
T  5694058 atgtttaaataacacaactca 5694038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 118 - 221
Target Start/End: Complemental strand, 3853313 - 3853210
Alignment:
Q  118 ttatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaa 217  Q
    |||| |||| ||||||||||||  || |||||| |||||||||||||  ||||| ||||| |||||| || | ||| |||||||||||||||||||||||    
T  3853313 ttatgttttaactttctctctctattgctttgatttttgtgtcaatatctcattttctttgtaaaatctttgttgtctcaaaagttgtcatataaatgaa 3853214  T
Q  218 tgtt 221  Q
    ||||    
T  3853213 tgtt 3853210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 117 - 236
Target Start/End: Complemental strand, 32316935 - 32316816
Alignment:
Q  117 attatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatga 216  Q
    ||||| |||||||||| ||||||  || |||||  |||||||||| ||| ||||| ||||| ||||||||||| |||  |||||||||||| ||| |||     
T  32316935 attatctttttactttatctctctattgctttggtttttgtgtcagtacctcattttctttgtaaaattttggttgtcacaaaagttgtcacatatatgg 32316836  T
Q  217 atgtttaaataatacaactc 236  Q
    ||||| |||||| |||||||    
T  32316835 atgttcaaataacacaactc 32316816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 237
Target Start/End: Original strand, 552857 - 552977
Alignment:
Q  117 attatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatga 216  Q
    ||||| |||||||||||||||||  || |||||  ||||||| || ||| |||||  |||| ||||||||||| |||  |||||||||||| ||| |||     
T  552857 attatctttttactttctctctctattgctttggtttttgtgccactacctcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatgg 552956  T
Q  217 atgtttaaataatacaactca 237  Q
    ||||| |||||| ||||||||    
T  552957 atgttcaaataacacaactca 552977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 105 - 236
Target Start/End: Complemental strand, 13690013 - 13689882
Alignment:
Q  105 tctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttg 204  Q
    ||||| ||||| ||||| |||||||||| | ||||  || |||||| |||||||||||||| |||||  |||||||||||||| | |||   |||| |||    
T  13690013 tctcatacttagattatttttttactttttttctctattgctttgatttttgtgtcaatacctcatttcctttataaaattttagttgtcgtaaaaattg 13689914  T
Q  205 tcatataaatgaatgtttaaataatacaactc 236  Q
    ||| ||| ||| ||||| |||||| |||||||    
T  13689913 tcacatatatggatgttcaaataacacaactc 13689882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 236
Target Start/End: Original strand, 30457575 - 30457688
Alignment:
Q  123 tttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgttt 222  Q
    ||||||||||||||||   ||  ||||  |||||||||||||| ||||| ||| | | ||||||||| | | ||||||||||||||||||||| |||||     
T  30457575 tttttactttctctctttgttgttttggtttttgtgtcaatacctcattttctatgtgaaattttggttatctcaaaagttgtcatataaatggatgttg 30457674  T
Q  223 aaataatacaactc 236  Q
    || ||| |||||||    
T  30457675 aattaacacaactc 30457688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 123 - 239
Target Start/End: Original strand, 14818002 - 14818118
Alignment:
Q  123 tttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgttt 222  Q
    ||||||||||||||||   ||  ||||  ||||||| || ||| |||||  |||| ||||||||||| |||  |||||||||||||||| || ||||||     
T  14818002 tttttactttctctctttattgttttggtttttgtgccactacctcatttcctttctaaaattttggttgtcacaaaagttgtcatatatataaatgttc 14818101  T
Q  223 aaataatacaactcata 239  Q
    |||||| ||||||||||    
T  14818102 aaataacacaactcata 14818118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 104 - 228
Target Start/End: Complemental strand, 18737587 - 18737463
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagtt 203  Q
    |||||| ||||  ||||| ||||||||||||||||   ||  ||||  ||||||| |||||| ||||| ||||| ||||||||||| |||  ||||||||    
T  18737587 ctctcatacttgcattatctttttactttctctctttattgttttggtttttgtgacaatacctcattttctttgtaaaattttggttgtcacaaaagtt 18737488  T
Q  204 gtcatataaatgaatgtttaaataa 228  Q
    |||| ||| ||| ||||| ||||||    
T  18737487 gtcacatacatggatgttcaaataa 18737463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 236
Target Start/End: Original strand, 15974672 - 15974791
Alignment:
Q  117 attatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatga 216  Q
    ||||| |||||| ||||||||||  || |||||  |||||||| | |||||||||  |||| ||||||||||| |||  |||||||||| | ||| |||     
T  15974672 attatctttttattttctctctctattgctttggtttttgtgttactacttcatttcctttgtaaaattttggttgtcacaaaagttgttacatatatgg 15974771  T
Q  217 atgtttaaataatacaactc 236  Q
    ||||| |||||| |||||||    
T  15974772 atgttcaaataacacaactc 15974791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 236
Target Start/End: Original strand, 24900838 - 24900957
Alignment:
Q  117 attatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatga 216  Q
    |||||||||||||||||||||||  || |||||  ||||||| ||||   ||||| ||||| |||||||||   |||| |||| |||||||||||||       
T  24900838 attatatttttactttctctctctattgctttggtttttgtgccaatcactcattttctttgtaaaattttaattgttgcaaatgttgtcatataaaatg 24900937  T
Q  217 atgtttaaataatacaactc 236  Q
    ||||| |||||| |||||||    
T  24900938 atgttcaaataacacaactc 24900957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 214
Target Start/End: Complemental strand, 11014962 - 11014900
Alignment:
Q  152 ttttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaat 214  Q
    |||||||||||||| ||||| |||| |||||||||||  ||| ||||||||| ||||||||||    
T  11014962 ttttgtgtcaatacctcattttcttcataaaattttgattgtctcaaaagttatcatataaat 11014900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 240
Target Start/End: Complemental strand, 17551398 - 17551263
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagtt 203  Q
    |||||| ||| | ||||| |||||||||| ||||||  ||  ||||  |||||||||||| | ||||| |||||||||| |||||| |||  |||| | |    
T  17551398 ctctcatactcacattatgtttttactttatctctctattgttttggtttttgtgtcaatccctcattttctttataaa-ttttggttgtcacaaatgct 17551300  T
Q  204 gtcatataaatgaatgtttaaataatacaactcataa 240  Q
    |||||| ||||  ||||| |||||| |||||||||||    
T  17551299 gtcataaaaatagatgttcaaataacacaactcataa 17551263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 233
Target Start/End: Complemental strand, 30423531 - 30423443
Alignment:
Q  145 ctttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgtttaaataatacaa 233  Q
    ||||||||||||| ||||||| ||||| ||||||||||  ||||  ||| ||||||||| ||| ||||||  ||||| |||||| ||||    
T  30423531 ctttgaattttgtatcaatacctcattttctttataaagctttgattgtatcaaaagttatcacataaatagatgttcaaataacacaa 30423443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 236
Target Start/End: Complemental strand, 33430334 - 33430250
Alignment:
Q  152 ttttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgtttaaataatacaactc 236  Q
    |||||||||| ||| |||||  |||| ||||||||||| |||  |||||||||||| ||| ||||||||  |||||| |||||||    
T  33430334 ttttgtgtcactacctcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatgaatgtccaaataacacaactc 33430250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 236
Target Start/End: Original strand, 1156784 - 1156903
Alignment:
Q  117 attatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatga 216  Q
    ||||| |||||||||||||||||  ||||||||  ||||||| || ||  |||||  ||||| |||||||||  |||  |||||||| ||| ||| |||     
T  1156784 attatttttttactttctctctctattactttggtttttgtgccactatctcatttcctttacaaaattttgattgtcacaaaagttatcaaatatatgg 1156883  T
Q  217 atgtttaaataatacaactc 236  Q
    ||||| |||||| |||||||    
T  1156884 atgttcaaataacacaactc 1156903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 236
Target Start/End: Original strand, 4820459 - 4820550
Alignment:
Q  145 ctttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgtttaaataatacaactc 236  Q
    |||||| |||||||||||| | ||||| ||||| ||||||||||  ||| ||||||||| |||| |||||   |||| |||||| |||||||    
T  4820459 ctttgatttttgtgtcaatgcctcattttctttgtaaaattttgattgtctcaaaagttatcatgtaaatagttgttcaaataacacaactc 4820550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 104 - 236
Target Start/End: Complemental strand, 37133882 - 37133750
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagtt 203  Q
    |||||||||| ||||||| |||||||||||||| ||  || |||||| |||||||||||||  ||||| ||||| ||||||||||| |||  ||||||||    
T  37133882 ctctcacactcatattatgtttttactttctctttctattgctttgatttttgtgtcaatatatcattttctttgtaaaattttggttgtcacaaaagtt 37133783  T
Q  204 gtcatataaatgaatgtttaaataatacaactc 236  Q
    ||||| |||||| ||||| |||||| |||||||    
T  37133782 gtcatctaaatggatgttaaaataacacaactc 37133750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 123 - 236
Target Start/End: Original strand, 29025330 - 29025443
Alignment:
Q  123 tttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgttt 222  Q
    ||||||| |||||||||  || |||||  |||||||||||||| ||||| ||||| ||||||||||| |||  |||||||||||||||||||| ||||||    
T  29025330 tttttaccttctctctctattgctttggtttttgtgtcaatacctcattttctttgtaaaattttggttgtcccaaaagttgtcatataaatggatgttt 29025429  T
Q  223 aaataatacaactc 236  Q
    |||||| |||||||    
T  29025430 aaataacacaactc 29025443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 104 - 236
Target Start/End: Complemental strand, 11253562 - 11253430
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagtt 203  Q
    |||||| ||||| ||||| |||||| ||||||||||  || |||||  |||||||||||||| ||||| ||||| |||||||||||  ||  ||||||||    
T  11253562 ctctcatacttacattatctttttattttctctctctattgctttggtttttgtgtcaatacctcattttctttgtaaaattttggtcgtcacaaaagtt 11253463  T
Q  204 gtcatataaatgaatgtttaaataatacaactc 236  Q
    |||||||  ||  ||||| ||||||||||||||    
T  11253462 gtcatatttatagatgttcaaataatacaactc 11253430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 104 - 244
Target Start/End: Complemental strand, 36660470 - 36660330
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagtt 203  Q
    |||||| ||||| ||||| |||||||||||||||||  || |||||  | |||||||||||||||||| ||||||||||||||||  |||  ||||||||    
T  36660470 ctctcatacttacattatctttttactttctctctctattgctttggttattgtgtcaatacttcattttctttataaaattttgattgtcacaaaagtt 36660371  T
Q  204 gtcatataaatgaatgtttaaataatacaactcataataaa 244  Q
     ||| ||  ||| ||||| |||||| ||||||  |||||||    
T  36660370 atcacatttatggatgttcaaataacacaactattaataaa 36660330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 115 - 237
Target Start/End: Complemental strand, 23754715 - 23754593
Alignment:
Q  115 atattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaat 214  Q
    |||||||||||||||||| |||| |  ||  ||||  ||||||||||||   ||||| ||||| ||||||||||| |||| |||| |||||||||||||     
T  23754715 atattatatttttactttatctcactattgttttggtttttgtgtcaatcactcattttctttgtaaaattttggttgttgcaaaggttgtcatataaaa 23754616  T
Q  215 gaatgtttaaataatacaactca 237  Q
     |||||| |||||| ||||||||    
T  23754615 taatgttcaaataacacaactca 23754593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 115 - 188
Target Start/End: Original strand, 10731608 - 10731681
Alignment:
Q  115 atattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttg 188  Q
    ||||||| |||||||||||||||||  || |||||| ||||||||||||||||||||  |||| ||||||||||    
T  10731608 atattatctttttactttctctctctattgctttgatttttgtgtcaatacttcatttcctttgtaaaattttg 10731681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 119 - 236
Target Start/End: Original strand, 13244272 - 13244389
Alignment:
Q  119 tatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaat 218  Q
    |||||||||||||||||| ||  ||| |||   |||||||| ||||||| ||| ||||||||||||||||||| |||   |||||||| || |||||| |    
T  13244272 tatatttttactttctctatctattaattttgcttttgtgttaatactttattttctttataaaattttggatatttttgaagttgtcgtaaaaatgatt 13244371  T
Q  219 gtttaaataatacaactc 236  Q
    ||| |||||| |||||||    
T  13244372 gttaaaataacacaactc 13244389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 182
Target Start/End: Original strand, 44596351 - 44596419
Alignment:
Q  114 tatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaa 182  Q
    |||||||||||||||||||||||||   |||||||||||||||| ||| ||||| ||| ||||||||||    
T  44596351 tatattatatttttactttctctctttattactttgaattttgtatcagtactttattttctttataaa 44596419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 104 - 187
Target Start/End: Original strand, 10902756 - 10902839
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaatttt 187  Q
    |||||||||| | ||||| |||||||||||||||||  || |||||| ||||||| |||||| ||||| ||||| |||||||||    
T  10902756 ctctcacactcacattatgtttttactttctctctctattgctttgatttttgtgccaatacatcattttctttgtaaaatttt 10902839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 233
Target Start/End: Complemental strand, 32501216 - 32501087
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagtt 203  Q
    |||||| ||| | ||||| ||||||| |||||||||  ||||||||| |||||||||| ||| |||||  |||| ||||||||||| |||  ||||| ||    
T  32501216 ctctcatactcacattatttttttacgttctctctctattactttgatttttgtgtcactacctcatttcctttgtaaaattttggttgtcacaaaaatt 32501117  T
Q  204 gtcatataaatgaatgtttaaataatacaa 233  Q
     ||| ||| ||| ||||| |||||| ||||    
T  32501116 ctcacatatatggatgttcaaataacacaa 32501087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 104 - 228
Target Start/End: Complemental strand, 10839502 - 10839378
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagtt 203  Q
    |||||| ||||| ||||| |||||||||||||| ||  || |||||  ||||||| ||||| || ||| ||||| ||||||||| | ||| |||||| ||    
T  10839502 ctctcatacttacattatgtttttactttctctatctattgctttggtttttgtgccaatatttaattttctttgtaaaattttagttgtctcaaaaatt 10839403  T
Q  204 gtcatataaatgaatgtttaaataa 228  Q
     ||||| ||||| ||||| ||||||    
T  10839402 atcataaaaatggatgttcaaataa 10839378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 236
Target Start/End: Original strand, 13106545 - 13106663
Alignment:
Q  118 ttatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaa 217  Q
    |||||||||| |||||||||||  || |||||  |||||||||||||| || || ||||| |||| || ||| ||||  |||||||||||  ||||||      
T  13106545 ttatatttttgctttctctctctattgctttgctttttgtgtcaatacctctttttctttgtaaatttatggttgttataaaagttgtcacctaaatggt 13106644  T
Q  218 tgtttaaataatacaactc 236  Q
    |||| |||||| |||||||    
T  13106645 tgttcaaataacacaactc 13106663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 236
Target Start/End: Complemental strand, 21526300 - 21526167
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagtt 203  Q
    |||||| ||| | ||||| ||||||||||||||||   || ||||| |||||||| |||||| || || ||||| | ||||| ||| |||  ||||||||    
T  21526300 ctctcatactcacattatgtttttactttctctctttgttgctttggattttgtgccaatacctctttttctttgtgaaattatggttgtcccaaaagtt 21526201  T
Q  204 gtcatat-aaatgaatgtttaaataatacaactc 236  Q
    |||| || |||||  ||||||||||| |||||||    
T  21526200 gtcaaatcaaatggttgtttaaataacacaactc 21526167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 238
Target Start/End: Complemental strand, 3381532 - 3381457
Alignment:
Q  162 atacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgtttaaataatacaactcat 238  Q
    |||||||||| ||||| |||||||| || ||| |||| |||||||||||||||| |||||  ||||||| |||||||    
T  3381532 atacttcattttctttgtaaaattt-ggttgtatcaagagttgtcatataaatggatgttctaataatataactcat 3381457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 237
Target Start/End: Original strand, 22719504 - 22719624
Alignment:
Q  117 attatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatga 216  Q
    ||||| |||||||||||||||||  || |||||  |||||||  | ||| ||||| ||||| ||||||||||| | |  |||||||||||| ||| |||     
T  22719504 attatctttttactttctctctctattgctttggtttttgtgcaactacctcattttctttgtaaaattttggttatcacaaaagttgtcacatatatgg 22719603  T
Q  217 atgtttaaataatacaactca 237  Q
     |||| |||||| ||||||||    
T  22719604 ctgttcaaataacacaactca 22719624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 236
Target Start/End: Original strand, 34186671 - 34186790
Alignment:
Q  117 attatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatga 216  Q
    ||||| |||||| ||||||||||  ||||||||  |||||||||| ||| |||||  ||||  |||||||||  |||  |||||||||||| ||  |||     
T  34186671 attatctttttattttctctctctattactttggtttttgtgtcactacctcatttcctttgcaaaattttgattgtcacaaaagttgtcacatgtatgg 34186770  T
Q  217 atgtttaaataatacaactc 236  Q
    ||||| |||||| |||||||    
T  34186771 atgttcaaataacacaactc 34186790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 239
Target Start/End: Complemental strand, 4054293 - 4054171
Alignment:
Q  117 attatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatga 216  Q
    ||||| ||||||||||||||||   || |||||  |||||||||| ||| |||||   ||| |||| |||||  |||  |||||||||||| ||| || |    
T  4054293 attatctttttactttctctctttattgctttggtttttgtgtcactacctcatttcatttgtaaagttttgattgtcacaaaagttgtcacatatataa 4054194  T
Q  217 atgtttaaataatacaactcata 239  Q
    ||||| |||||| ||||||||||    
T  4054193 atgttcaaataacacaactcata 4054171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 165
Target Start/End: Original strand, 6440133 - 6440194
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatac 165  Q
    |||||| ||| | ||||||||||||||||||||||   || |||||| ||||||||||||||    
T  6440133 ctctcatactcacattatatttttactttctctctttcttgctttgatttttgtgtcaatac 6440194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 165
Target Start/End: Complemental strand, 25830265 - 25830204
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatac 165  Q
    |||||| ||| | |||||||||||||||||||||||  |||||||||  |||||| ||||||    
T  25830265 ctctcatactcacattatatttttactttctctctctattactttgatatttgtgccaatac 25830204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 34796483 - 34796565
Alignment:
Q  152 ttttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgtttaaataatacaactc 236  Q
    |||||||||||||| |  || || |||||||||||||| ||| | |||||||||||||||| ||  |||| |||||||| |||||    
T  34796483 ttttgtgtcaatacat--ttttcgttataaaattttggttgtcttaaaagttgtcatataattggttgttcaaataatataactc 34796565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 163
Target Start/End: Complemental strand, 7795317 - 7795265
Alignment:
Q  111 acttatattatatttttactttctctctcgtttactttgaattttgtgtcaat 163  Q
    ||||| |||||||||||||||||||| ||  |||||||||  |||||||||||    
T  7795317 acttacattatatttttactttctctttctattactttgatatttgtgtcaat 7795265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 163
Target Start/End: Complemental strand, 7814601 - 7814553
Alignment:
Q  115 atattatatttttactttctctctcgtttactttgaattttgtgtcaat 163  Q
    |||||||||||||||||||||||||  |||||||||  ||| |||||||    
T  7814601 atattatatttttactttctctctctattactttgatatttatgtcaat 7814553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 163
Target Start/End: Original strand, 12655985 - 12656033
Alignment:
Q  115 atattatatttttactttctctctcgtttactttgaattttgtgtcaat 163  Q
    |||||||||||||||||||||||||  ||||||| | ||||||| ||||    
T  12655985 atattatatttttactttctctctctattactttcatttttgtgccaat 12656033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 235
Target Start/End: Original strand, 32133425 - 32133505
Alignment:
Q  155 tgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgtttaaataatacaact 235  Q
    ||||||||||| | ||| | ||| ||||||||||| | | |||||| || ||||||||||| ||||| |||||| ||||||    
T  32133425 tgtgtcaataccttattttatttgtaaaattttggttatctcaaaatttatcatataaatggatgttcaaataacacaact 32133505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 121 - 236
Target Start/End: Complemental strand, 35072365 - 35072250
Alignment:
Q  121 tatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgt 220  Q
    |||||||||||||||| ||  || |||||| ||||||||||||   ||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  35072365 tatttttactttctctttctattgctttgatttttgtgtcaatgtctcattttctttataaaattttggttgtttcaaaagttgtcatataaatggatgt 35072266  T
Q  221 ttaaataatacaactc 236  Q
    | | |||| |||||||    
T  35072265 tcagataacacaactc 35072250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 152 - 236
Target Start/End: Complemental strand, 46022239 - 46022155
Alignment:
Q  152 ttttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgtttaaataatacaactc 236  Q
    |||||||||||||| ||||| ||||||||||||||||| ||| ||||||||||||||||||||| ||||| |||||| |||||||    
T  46022239 ttttgtgtcaatacctcattttctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactc 46022155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 121 - 236
Target Start/End: Complemental strand, 35098706 - 35098591
Alignment:
Q  121 tatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgt 220  Q
    |||||||||||||||| ||  || |||||| ||||||||||||   ||||| ||| ||||||||||||| ||||||||||||||||||||||||| || |    
T  35098706 tatttttactttctctttctattgctttgatttttgtgtcaatgtctcattttctatataaaattttggttgtttcaaaagttgtcatataaatggatat 35098607  T
Q  221 ttaaataatacaactc 236  Q
    | |||||| |||||||    
T  35098606 tcaaataacacaactc 35098591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 7701643 - 7701727
Alignment:
Q  152 ttttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgtttaaataatacaactc 236  Q
    |||||||||||||| ||||| ||||||||||| ||||| ||| ||||||||||||||||||||| ||||| |||||| |||||||    
T  7701643 ttttgtgtcaatacctcattttctttataaaactttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactc 7701727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 117 - 243
Target Start/End: Original strand, 40417838 - 40417964
Alignment:
Q  117 attatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatga 216  Q
    ||||| |||||||||||| ||||  || |||||  |||| ||||||||| ||| | ||||| ||||||||||| ||| |||||||||||| |||||||      
T  40417838 attatgtttttactttctttctctattgctttggtttttatgtcaatacctcactttctttgtaaaattttggttgtctcaaaagttgtcgtataaatag 40417937  T
Q  217 atgtttaaataatacaactcataataa 243  Q
    ||||| |||||| ||||||||||||||    
T  40417938 atgttcaaataacacaactcataataa 40417964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 111 - 228
Target Start/End: Complemental strand, 44649339 - 44649224
Alignment:
Q  111 acttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatat 210  Q
    ||||| ||||| ||||||||||||||||  |||||||||  ||||||||||||| || ||| ||||||||||||||| | ||| ||||||||||||||      
T  44649339 acttacattatgtttttactttctctct--tttactttggtttttgtgtcaatatttaattttctttataaaattttagttgtctcaaaagttgtcatga 44649242  T
Q  211 aaatgaatgtttaaataa 228  Q
    ||||  ||||||||||||    
T  44649241 aaatagatgtttaaataa 44649224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 117 - 236
Target Start/End: Original strand, 31445382 - 31445501
Alignment:
Q  117 attatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatga 216  Q
    |||||||||||||||||||||||  || |||||| ||||||||||||   ||||| ||||| ||||||||||  |||| ||||| || |||||||||       
T  31445382 attatatttttactttctctctctattgctttgatttttgtgtcaatcactcattttctttgtaaaattttgattgttgcaaaaattatcatataaaatg 31445481  T
Q  217 atgtttaaataatacaactc 236  Q
    ||||| |||||| |||||||    
T  31445482 atgttcaaataacacaactc 31445501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 228
Target Start/End: Complemental strand, 3614404 - 3614342
Alignment:
Q  166 ttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgtttaaataa 228  Q
    |||||| ||||| ||||||||||| ||||||||||||||||||||||||| ||||| ||||||    
T  3614404 ttcattgtctttgtaaaattttggttgtttcaaaagttgtcatataaatggatgttcaaataa 3614342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 104 - 238
Target Start/End: Complemental strand, 38956638 - 38956504
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagtt 203  Q
    |||||| ||| | ||||| |||||||||||||||||  || |||||  ||||||| || ||| |||||  |||| ||||||||||| |||  ||||||||    
T  38956638 ctctcatactcacattatctttttactttctctctctattgctttgttttttgtgccactacctcatttcctttgtaaaattttggttgtcacaaaagtt 38956539  T
Q  204 gtcatataaatgaatgtttaaataatacaactcat 238  Q
    |||| ||| ||| ||||| |||||| |||||||||    
T  38956538 gtcacatatatggatgttcaaataacacaactcat 38956504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 235
Target Start/End: Original strand, 38944917 - 38944979
Alignment:
Q  173 tctttataaaattttggatgtttcaaaagttgtcatataaatgaatgtttaaataatacaact 235  Q
    ||||| ||||||||||  ||| | |||||||||||||||||||||||||||||||| ||||||    
T  38944917 tctttgtaaaattttgattgtcttaaaagttgtcatataaatgaatgtttaaataacacaact 38944979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 236
Target Start/End: Complemental strand, 3937141 - 3937011
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagtt 203  Q
    |||||| ||| | ||||| |||||||||| |||||   ||||||||  ||||||| |||||| |||||  |||||||||||||||| |||  ||||||||    
T  3937141 ctctcatactcacattatctttttactttatctcta--ttactttggtttttgtgccaatacctcatttcctttataaaattttggttgtcacaaaagtt 3937044  T
Q  204 gtcatataaatgaatgtttaaataatacaactc 236  Q
    |||| ||  ||| ||||| |||||| |||||||    
T  3937043 gtcacatgtatggatgttcaaataacacaactc 3937011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 234
Target Start/End: Original strand, 32803749 - 32803870
Alignment:
Q  113 ttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataa 212  Q
    ||||||||| ||||||||||||||||  |||   | |  |||| ||||||||||| ||| | | | |||||||||   ||||||||||||||||||||||    
T  32803749 ttatattatgtttttactttctctctattttgaatcggcttttatgtcaatactttattttttatgtaaaattttaattgtttcaaaagttgtcatataa 32803848  T
Q  213 atgaatgtttaaataatacaac 234  Q
    ||| ||||| |||||| |||||    
T  32803849 atggatgttcaaataacacaac 32803870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 188
Target Start/End: Original strand, 48062119 - 48062192
Alignment:
Q  115 atattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttg 188  Q
    ||||||| |||||||||||||||||  ||  ||||  |||||||||||||| ||||| ||||||||||||||||    
T  48062119 atattatgtttttactttctctctctattgttttggtttttgtgtcaatacctcattttctttataaaattttg 48062192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 236
Target Start/End: Original strand, 17002401 - 17002519
Alignment:
Q  117 attatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatga 216  Q
    ||||||||||||| |||||| ||  ||||||||  ||||||||||||   ||||| ||||||||||| ||||| |||| ||||  ||||||||||||       
T  17002401 attatatttttaccttctctttctattactttggtttttgtgtcaatcactcattttctttataaaa-tttggttgttgcaaagattgtcatataaaatg 17002499  T
Q  217 atgtttaaataatacaactc 236  Q
    ||||| |||||| |||||||    
T  17002500 atgttcaaataacacaactc 17002519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 234
Target Start/End: Complemental strand, 10700184 - 10700076
Alignment:
Q  125 tttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgtttaa 224  Q
    |||||||||||||||  || |||||| ||||||||||| ||||  || ||||||||||||| ||| |||  ||||||||||||   |||||| |||| ||    
T  10700184 tttactttctctctctattgctttgatttttgtgtcaagactt-tttttctttataaaattatggttgtcccaaaagttgtcaatcaaatgattgttcaa 10700086  T
Q  225 ataatacaac 234  Q
    |||| |||||    
T  10700085 ataacacaac 10700076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 237
Target Start/End: Original strand, 4292479 - 4292613
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtt-tcaaaagt 202  Q
    |||||| ||| | ||||| |||||||||||||||||  || |||||| ||||||  ||||| || ||| ||||| ||||| |||  ||  | ||||||||    
T  4292479 ctctcatactcacattatgtttttactttctctctctattgctttgatttttgtaccaatatttaattttctttgtaaaaattttaattatctcaaaagt 4292578  T
Q  203 tgtcatataaatgaatgtttaaataatacaactca 237  Q
    ||||||  ||||| |||||||||||| || |||||    
T  4292579 tgtcatgaaaatggatgtttaaataacactactca 4292613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 237
Target Start/End: Complemental strand, 22918170 - 22918056
Alignment:
Q  123 tttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgttt 222  Q
    |||||||||||||||||  || |||||  ||||||| || ||| |||||  |||| ||||||||||  |||  |||||||||||| ||  ||| ||| |     
T  22918170 tttttactttctctctctattgctttggtttttgtgccactacctcatttcctttgtaaaattttgattgtcgcaaaagttgtcacatgtatggatgctc 22918071  T
Q  223 aaataatacaactca 237  Q
    |||||||||||||||    
T  22918070 aaataatacaactca 22918056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 183
Target Start/End: Complemental strand, 34507212 - 34507146
Alignment:
Q  117 attatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaa 183  Q
    |||||||||||||||||||||||  || |||||| ||| |||||||||| | ||| | |||||||||    
T  34507212 attatatttttactttctctctctattgctttgattttcgtgtcaatacatgattttttttataaaa 34507146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 236
Target Start/End: Complemental strand, 41189550 - 41189429
Alignment:
Q  117 attatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgt--catataaat 214  Q
    ||||| |||||||||||||||||  || ||||   |||||||||||||| |||||  |||| ||||||||||  |||   ||||||| |  |||||| ||    
T  41189550 attatctttttactttctctctctattgctttagtttttgtgtcaatacctcatttcctttgtaaaattttgattgtcataaaagttatcacatatatat 41189451  T
Q  215 gaatgtttaaataatacaactc 236  Q
    ||||||| |||||| |||||||    
T  41189450 gaatgttcaaataacacaactc 41189429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 228
Target Start/End: Complemental strand, 44895578 - 44895468
Alignment:
Q  118 ttatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaa 217  Q
    |||| |||||||||||||||||  || |||||  ||||||| || ||| |||||  |||| ||||||||||| |||  |||||||||| | ||| ||| |    
T  44895578 ttatctttttactttctctctctattgctttggtttttgtgccactacctcatttcctttgtaaaattttggttgtcacaaaagttgttacatatatgga 44895479  T
Q  218 tgtttaaataa 228  Q
    |||| ||||||    
T  44895478 tgttcaaataa 44895468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 117 - 213
Target Start/End: Complemental strand, 33578321 - 33578227
Alignment:
Q  117 attatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaa 213  Q
    ||||||||||||||||||||||   ||| ||||  |||||| |||||   ||||| ||||| ||||||||| | |||| |||| |||||||||||||    
T  33578321 attatatttttactttctctcta--ttattttggtttttgtatcaatcactcattttctttgtaaaattttagttgttgcaaaggttgtcatataaa 33578227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 153 - 233
Target Start/End: Original strand, 35207601 - 35207679
Alignment:
Q  153 tttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgtttaaataatacaa 233  Q
    ||||||||||||||||||| | ||| ||||||||||| ||| |||||  || || |||||||| ||||| |||||| ||||    
T  35207601 tttgtgtcaatacttcattttatttgtaaaattttggttgtctcaaa--ttatcctataaatggatgttcaaataacacaa 35207679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 165
Target Start/End: Complemental strand, 35822994 - 35822933
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatac 165  Q
    ||||||||||   |||||||||||||||||||||||  || |||||| ||||||| ||||||    
T  35822994 ctctcacactcgcattatatttttactttctctctctattgctttgatttttgtgccaatac 35822933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 117 - 182
Target Start/End: Original strand, 41018728 - 41018793
Alignment:
Q  117 attatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaa 182  Q
    |||||||||||||||||||||||  ||||||||  |||||||| ||||| || || ||||| ||||    
T  41018728 attatatttttactttctctctctattactttggtttttgtgttaatacctctttttctttgtaaa 41018793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 236
Target Start/End: Complemental strand, 25192889 - 25192805
Alignment:
Q  152 ttttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgtttaaataatacaactc 236  Q
    |||||||||| ||| ||||| ||||| ||||||||| | |||  |||||||||||| ||  |||||| || |||||| |||||||    
T  25192889 ttttgtgtcactacctcattttctttgtaaaattttagttgtcacaaaagttgtcacatgtatgaatattcaaataacacaactc 25192805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 164
Target Start/End: Complemental strand, 36352604 - 36352544
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaata 164  Q
    |||||| ||||| |||||||||||||||| ||||||  || |||||| ||| |||||||||    
T  36352604 ctctcatacttacattatatttttactttatctctctattgctttgattttcgtgtcaata 36352544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 236
Target Start/End: Original strand, 43025391 - 43025523
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagtt 203  Q
    |||||| ||| ||||||| |||||||||| ||||||  || |||||  ||||||| || ||  |||||  |||| ||||||||| | |||| ||||||||    
T  43025391 ctctcatactcatattatctttttactttttctctctattgctttggtttttgtgccactatctcatttcctttgtaaaattttagttgttacaaaagtt 43025490  T
Q  204 gtcatataaatgaatgtttaaataatacaactc 236  Q
    |||| ||| ||  |||||  ||||| |||||||    
T  43025491 gtcacatatatagatgttcgaataacacaactc 43025523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 165
Target Start/End: Original strand, 48145589 - 48145637
Alignment:
Q  117 attatatttttactttctctctcgtttactttgaattttgtgtcaatac 165  Q
    |||||||||||||||||||||||  |||||||||  |||||| ||||||    
T  48145589 attatatttttactttctctctctattactttgatatttgtgccaatac 48145637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 7e-24; HSPs: 32)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 17626085 - 17626169
Alignment:
Q  152 ttttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgtttaaataatacaactc 236  Q
    |||||||||||||| ||||| ||||||||||||||||| ||| ||||||||||||||||||||| ||||| |||||| |||||||    
T  17626085 ttttgtgtcaatacctcattttctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactc 17626169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 117 - 238
Target Start/End: Complemental strand, 7287196 - 7287075
Alignment:
Q  117 attatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatga 216  Q
    |||||||||||||||||||||||  ||  ||||  |||||||||| ||| ||||| ||||| ||||||||||| |||  |||||||||||| ||| ||||    
T  7287196 attatatttttactttctctctctattgttttggtttttgtgtcactacctcattttctttgtaaaattttggttgtcacaaaagttgtcacatatatga 7287097  T
Q  217 atgtttaaataatacaactcat 238  Q
    ||||| |||||| |||||||||    
T  7287096 atgttcaaataacacaactcat 7287075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 104 - 236
Target Start/End: Original strand, 5168234 - 5168366
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagtt 203  Q
    |||||| ||| | ||||| |||||||||||||||||  || |||||| ||||||| || ||| ||||| ||||| ||||||||| | |||  ||||||||    
T  5168234 ctctcatactcacattatctttttactttctctctctattgctttgatttttgtgccactacctcattttctttgtaaaattttagttgtcacaaaagtt 5168333  T
Q  204 gtcatataaatgaatgtttaaataatacaactc 236  Q
    |||||||| ||||||||| |||||| |||||||    
T  5168334 gtcatatatatgaatgttcaaataacacaactc 5168366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 104 - 230
Target Start/End: Complemental strand, 7076588 - 7076462
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagtt 203  Q
    |||||| ||| ||||||| |||||||||||||||||  || |||||  ||||||| || |||||||||  |||| ||||||||||| |||  ||||||||    
T  7076588 ctctcatactcatattatttttttactttctctctctattgctttggtttttgtgccattacttcatttcctttgtaaaattttggttgtcacaaaagtt 7076489  T
Q  204 gtcatataaatgaatgtttaaataata 230  Q
    |||| ||| ||||||||| ||||||||    
T  7076488 gtcacatatatgaatgttcaaataata 7076462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 104 - 236
Target Start/End: Complemental strand, 7552985 - 7552855
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagtt 203  Q
    |||||||||| | ||||| ||||||||||||||||  |  |  |||| |||||||||||||| ||||| |||||  |||||||||| |||  ||||||||    
T  7552985 ctctcacactcacattatgtttttactttctctctactgca--ttgatttttgtgtcaatacatcattttctttgcaaaattttggttgtcacaaaagtt 7552888  T
Q  204 gtcatataaatgaatgtttaaataatacaactc 236  Q
    ||||| |||||| ||||| |||||| |||||||    
T  7552887 gtcatctaaatggatgttcaaataacacaactc 7552855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 104 - 236
Target Start/End: Original strand, 33037571 - 33037703
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagtt 203  Q
    |||||| ||| | ||||| |||||||||| ||||||  || |||||| |||||||||| ||| |||||  |||| ||||||||||| |||  ||||||||    
T  33037571 ctctcatactcacattatctttttactttttctctctattgctttgatttttgtgtcactacctcatttcctttgtaaaattttggttgtcacaaaagtt 33037670  T
Q  204 gtcatataaatgaatgtttaaataatacaactc 236  Q
    |||| ||| ||| ||||| |||||| |||||||    
T  33037671 gtcacatatatggatgttcaaataacacaactc 33037703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 117 - 240
Target Start/End: Original strand, 41321319 - 41321442
Alignment:
Q  117 attatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatga 216  Q
    ||||| ||| |||||||||||||  ||||||||  |||||||||||||| |||||  |||| ||||||||||| |||  ||||| |||||| ||| |||     
T  41321319 attatctttgtactttctctctctattactttggtttttgtgtcaatacctcatttcctttgtaaaattttggttgtcacaaaaattgtcacatatatgg 41321418  T
Q  217 atgtttaaataatacaactcataa 240  Q
    || || |||||| |||||||||||    
T  41321419 atattcaaataacacaactcataa 41321442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 104 - 205
Target Start/End: Original strand, 35567552 - 35567653
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagtt 203  Q
    |||||| | ||| |||||||||||||||||||||||  || |||||||||||||||||| || | ||| | ||| ||||||| ||| ||| |||||||||    
T  35567552 ctctcatatttacattatatttttactttctctctctattgctttgaattttgtgtcaaaaccttattttatttgtaaaattatggttgtgtcaaaagtt 35567651  T
Q  204 gt 205  Q
    ||    
T  35567652 gt 35567653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 233
Target Start/End: Original strand, 13309947 - 13310063
Alignment:
Q  117 attatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatga 216  Q
    ||||| |||||||||||||||||   |||||||  |||||||| ||||| ||||| ||||| ||||| ||||  ||| |||||| ||||||| ||||||     
T  13309947 attatgtttttactttctctctctactactttggtttttgtgttaatacctcattttctttgtaaaaatttgattgtctcaaaaattgtcatctaaatgg 13310046  T
Q  217 atgtttaaataatacaa 233  Q
    ||||| |||||| ||||    
T  13310047 atgttcaaataacacaa 13310063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 237
Target Start/End: Complemental strand, 28306152 - 28306019
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagtt 203  Q
    |||||| ||| | ||||| || ||||||||||||||  || |||||   |||||| || ||| ||||| ||||| ||||||||||| |||  ||||||||    
T  28306152 ctctcatactcacattatcttcttactttctctctctattgctttggtctttgtgccactacctcattttctttgtaaaattttggttgtcacaaaagtt 28306053  T
Q  204 gtcatataaatgaatgtttaaataatacaactca 237  Q
    |||| ||| ||| ||||| |||||| ||||||||    
T  28306052 gtcacatatatggatgttcaaataacacaactca 28306019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 228
Target Start/End: Original strand, 8686990 - 8687066
Alignment:
Q  152 ttttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgtttaaataa 228  Q
    |||||||||||||| ||||| ||||| ||||||||||  ||||  ||||||||||| ||| ||||||||| ||||||    
T  8686990 ttttgtgtcaatacctcattttctttgtaaaattttgattgttataaaagttgtcacatatatgaatgttcaaataa 8687066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 238
Target Start/End: Original strand, 2972394 - 2972509
Alignment:
Q  123 tttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgttt 222  Q
    |||||||||||||||||  || |||||| |||||||||||||| |||||  |||  | ||||||||  |||  |||||||||||| ||| || ||||||     
T  2972394 tttttactttctctctctattgctttgatttttgtgtcaatacctcatttccttcgtgaaattttgattgtcacaaaagttgtcacatatataaatgttc 2972493  T
Q  223 aaataatacaactcat 238  Q
    |||||| |||| ||||    
T  2972494 aaataacacaagtcat 2972509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 236
Target Start/End: Original strand, 22972189 - 22972300
Alignment:
Q  125 tttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgtttaa 224  Q
    |||||||||||||||  ||  ||||  |||||| | ||||| | ||| ||||| ||||||||| | ||| ||||||||||| ||||||||| ||||| ||    
T  22972189 tttactttctctctctattgttttggtttttgtattaataccttattttctttgtaaaattttagttgtctcaaaagttgttatataaatggatgttcaa 22972288  T
Q  225 ataatacaactc 236  Q
    |||| |||||||    
T  22972289 ataacacaactc 22972300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 236
Target Start/End: Complemental strand, 26791251 - 26791132
Alignment:
Q  117 attatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatga 216  Q
    ||||| |||||||||||||||||  || |||||  ||||||| || ||  |||||  |||| ||||||||||| |||  |||||||||||| ||| |||     
T  26791251 attatctttttactttctctctctattgctttggtttttgtgccactaactcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatgg 26791152  T
Q  217 atgtttaaataatacaactc 236  Q
    ||||| |||||| |||||||    
T  26791151 atgttcaaataacacaactc 26791132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 234
Target Start/End: Original strand, 39054641 - 39054768
Alignment:
Q  107 tcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtc 206  Q
    ||||||| | ||||| |||||||||||||||||  || |||||| |||||||  ||||  ||||| |||||  |||||||||  | |  |||||||||||    
T  39054641 tcacactcacattatgtttttactttctctctctattgctttgatttttgtgcaaatatatcattttctttgcaaaattttgattatcacaaaagttgtc 39054740  T
Q  207 atataaatgaatgtttaaataatacaac 234  Q
    || |||||| ||||| |||||| |||||    
T  39054741 atctaaatggatgttcaaataacacaac 39054768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 123 - 236
Target Start/End: Original strand, 1274428 - 1274540
Alignment:
Q  123 tttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgttt 222  Q
    ||||||||| |||||||  || |||||  |||||||||||||  |||||| |||| ||||||||||| ||  | ||||||||||| ||| ||| |||||     
T  1274428 tttttacttcctctctctattgctttggtttttgtgtcaatatctcattccctttgtaaaattttggttgcat-aaaagttgtcacatatatggatgttc 1274526  T
Q  223 aaataatacaactc 236  Q
    |||||| |||||||    
T  1274527 aaataacacaactc 1274540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 236
Target Start/End: Original strand, 1671604 - 1671725
Alignment:
Q  115 atattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaat 214  Q
    ||||||| |||||||||||||| ||  ||  ||||  |||||||||| ||| |||||  |||| ||||||||||  |||  |||||||||||| ||| ||    
T  1671604 atattatctttttactttctctttctattgttttggtttttgtgtcagtacctcatttcctttgtaaaattttgattgtcacaaaagttgtcacatatat 1671703  T
Q  215 gaatgtttaaataatacaactc 236  Q
    | ||||| |||||| |||||||    
T  1671704 ggatgttcaaataacacaactc 1671725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 123 - 236
Target Start/End: Complemental strand, 14051316 - 14051203
Alignment:
Q  123 tttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgttt 222  Q
    |||||||||||||||||  ||  ||||  ||||||| || ||| ||||| ||||| ||||||||||| |||  |||||||| ||| ||| ||| ||||||    
T  14051316 tttttactttctctctctattgttttggtttttgtgccactacctcattttctttgtaaaattttggttgtcacaaaagttatcacatatatggatgttt 14051217  T
Q  223 aaataatacaactc 236  Q
     ||||| |||||||    
T  14051216 gaataacacaactc 14051203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 237
Target Start/End: Original strand, 15479520 - 15479653
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagtt 203  Q
    |||||| ||||||||||| |||||||||||||||||  ||  ||||  | || ||||||||| ||||| | ||| |||||||||   |||  ||||||||    
T  15479520 ctctcatacttatattatctttttactttctctctctattgttttggttattttgtcaatacctcattttttttgtaaaattttaattgtcacaaaagtt 15479619  T
Q  204 gtcatataaatgaatgtttaaataatacaactca 237  Q
    |||| ||  ||| ||||| |||||| ||||||||    
T  15479620 gtcacatttatggatgttcaaataacacaactca 15479653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 235
Target Start/End: Original strand, 1764294 - 1764406
Alignment:
Q  123 tttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgttt 222  Q
    ||||||||||||||||   || |||||  |||| || || ||| |||||  |||| ||||||||||| |||  |||||||||||| ||| |||||||||     
T  1764294 tttttactttctctctttattgctttggtttttatgccactacctcatttcctttctaaaattttggttgtcacaaaagttgtcacatatatgaatgttc 1764393  T
Q  223 aaataatacaact 235  Q
    |||||| ||||||    
T  1764394 aaataacacaact 1764406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 212
Target Start/End: Original strand, 4719702 - 4719810
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagtt 203  Q
    |||||| ||| | ||||| |||||||||| ||||||  || |||||| ||||||| ||||||||  || |||||  ||||||||||||||   |||||||    
T  4719702 ctctcatactcacattatgtttttactttttctctctattgctttgatttttgtgccaatactttcttttctttgcaaaattttggatgtactaaaagtt 4719801  T
Q  204 gtcatataa 212  Q
    |||| ||||    
T  4719802 gtcacataa 4719810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 235
Target Start/End: Original strand, 13168584 - 13168704
Alignment:
Q  115 atattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaat 214  Q
    ||||||| |||||||||| ||| ||  ||||||||  ||||||| || ||  |||||  |||| ||||||||||  |||  |||||||||||| ||| ||    
T  13168584 atattatttttttactttttctttctattactttggtttttgtgccactatctcatttcctttgtaaaattttgattgtcacaaaagttgtcacatatat 13168683  T
Q  215 gaatgtttaaataatacaact 235  Q
    ||||||| |||||| ||||||    
T  13168684 gaatgttgaaataacacaact 13168704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 236
Target Start/End: Complemental strand, 18258813 - 18258681
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagtt 203  Q
    |||||| ||||| ||||| |||||| ||| |||||   || |||||  ||||||| || ||| |||||  |||| ||||||||||| |||  ||||||||    
T  18258813 ctctcatacttacattatctttttattttttctctatatttctttggtttttgtgccactacctcatttcctttgtaaaattttggttgtcacaaaagtt 18258714  T
Q  204 gtcatataaatgaatgtttaaataatacaactc 236  Q
    |||| ||| ||| ||||| |||||| |||||||    
T  18258713 gtcacatatatggatgttcaaataacacaactc 18258681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 236
Target Start/End: Original strand, 36738999 - 36739131
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagtt 203  Q
    |||||| ||| | ||||| |||||||||||||||||  || |||||  |||||||||| ||| |||||   ||| ||||||||||| |||  ||||| ||    
T  36738999 ctctcatactcacattatctttttactttctctctctattgctttggtttttgtgtcactacctcatttcttttgtaaaattttggttgtcacaaaaatt 36739098  T
Q  204 gtcatataaatgaatgtttaaataatacaactc 236  Q
     ||| ||| ||| ||||| |||||| |||||||    
T  36739099 atcacatatatggatgttcaaataacacaactc 36739131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 130 - 185
Target Start/End: Original strand, 8097329 - 8097384
Alignment:
Q  130 tttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaatt 185  Q
    ||||||||||  || |||||| ||||||||||||||||| || |||||||||||||    
T  8097329 tttctctctctattgctttgatttttgtgtcaatacttctttttctttataaaatt 8097384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 236
Target Start/End: Complemental strand, 28467460 - 28467341
Alignment:
Q  117 attatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatga 216  Q
    ||||| ||||||||||||| |||  ||  ||||  |||||||||| | | |||||  |||||||||||||||| |||  ||||| |||||| ||| ||||    
T  28467460 attatctttttactttctcactctattgttttggtttttgtgtcactgcctcatttcctttataaaattttggttgtcacaaaaattgtcacatatatga 28467361  T
Q  217 atgtttaaataatacaactc 236  Q
    ||||| | |||| |||||||    
T  28467360 atgttcagataacacaactc 28467341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 236
Target Start/End: Original strand, 39591744 - 39591863
Alignment:
Q  117 attatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatga 216  Q
    ||||| || ||||||||||||||  || |||||  || |||||||||   ||||| ||||| ||||| ||||| |||  |||| ||||||||||||||      
T  39591744 attatgttgttactttctctctctattgctttggtttgtgtgtcaatctctcattttctttgtaaaactttggttgtcacaaaggttgtcatataaatag 39591843  T
Q  217 atgtttaaataatacaactc 236  Q
    ||||| |||||| |||||||    
T  39591844 atgttcaaataacacaactc 39591863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 236
Target Start/End: Original strand, 39592136 - 39592255
Alignment:
Q  117 attatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatga 216  Q
    ||||| || ||||||||||||||  || |||||  || |||||||||   ||||| ||||| ||||| ||||| |||  |||| ||||||||||||||      
T  39592136 attatgttgttactttctctctctattgctttggtttgtgtgtcaatctctcattttctttgtaaaactttggttgtcacaaaggttgtcatataaatag 39592235  T
Q  217 atgtttaaataatacaactc 236  Q
    ||||| |||||| |||||||    
T  39592236 atgttcaaataacacaactc 39592255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 236
Target Start/End: Original strand, 18660824 - 18660941
Alignment:
Q  118 ttatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaa 217  Q
    |||| |||||||||||||||||  || |||||  ||||||| ||||||||||||  |||| ||||| ||| |||  | |||||||| | | ||| |||||    
T  18660824 ttatctttttactttctctctctattgctttggtttttgtgccaatacttcatttcctttgtaaaagttt-gattgtacaaaagttatgacatatatgaa 18660922  T
Q  218 tgtttaaataatacaactc 236  Q
    ||||  |||||||||||||    
T  18660923 tgttcgaataatacaactc 18660941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 236
Target Start/End: Original strand, 3565190 - 3565267
Alignment:
Q  159 tcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgtttaaataatacaactc 236  Q
    ||||||| ||||| ||||| ||||||||||| ||| |||||||||||||   || || ||||| |||||| |||||||    
T  3565190 tcaatacctcattttctttgtaaaattttggttgtctcaaaagttgtcactcaagtggatgttcaaataacacaactc 3565267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 165
Target Start/End: Original strand, 22098307 - 22098368
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatac 165  Q
    |||||| ||| | |||||||||||||||||||||||  |||||||||  |||||| ||||||    
T  22098307 ctctcatactcacattatatttttactttctctctctattactttgatatttgtgccaatac 22098368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 115 - 164
Target Start/End: Original strand, 22529033 - 22529082
Alignment:
Q  115 atattatatttttactttctctctcgtttactttgaattttgtgtcaata 164  Q
    |||||||||||||||||| |||||   ||||||||| |||||||||||||    
T  22529033 atattatatttttactttatctctttgttactttgatttttgtgtcaata 22529082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 47)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 38382420 - 38382504
Alignment:
Q  152 ttttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgtttaaataatacaactc 236  Q
    |||||||||||||| ||||| ||||||||||||||||| ||| ||||||||||||||||||||| ||||| |||||| |||||||    
T  38382420 ttttgtgtcaatacctcattttctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactc 38382504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 47181940 - 47182024
Alignment:
Q  152 ttttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgtttaaataatacaactc 236  Q
    |||||||||||||| ||||| ||||||||||||||||| ||| ||||||||||||||||||||| ||||| |||||| |||||||    
T  47181940 ttttgtgtcaatacctcattttctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactc 47182024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 152 - 236
Target Start/End: Complemental strand, 48402169 - 48402085
Alignment:
Q  152 ttttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgtttaaataatacaactc 236  Q
    |||||||||||||| ||||| ||||||||||||||||| ||| ||||||||||||||||||||| ||||| |||||| |||||||    
T  48402169 ttttgtgtcaatacctcattttctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactc 48402085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 152 - 236
Target Start/End: Complemental strand, 56364017 - 56363933
Alignment:
Q  152 ttttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgtttaaataatacaactc 236  Q
    |||||||||||||| ||||| ||||||||||||||||| ||| |||||||||||||| |||||| ||||| |||||| |||||||    
T  56364017 ttttgtgtcaatacctcattttctttataaaattttggttgtctcaaaagttgtcatgtaaatggatgttcaaataacacaactc 56363933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 104 - 224
Target Start/End: Original strand, 39478486 - 39478608
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtt--tactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaag 201  Q
    |||||| ||| ||||||| |||||||||||| ||||  |  |||||||| |||||||||||||| ||||| ||||| ||||||||||| |||  ||||||    
T  39478486 ctctcatactcatattatttttttactttctttctctatattactttgatttttgtgtcaatacctcattttctttgtaaaattttggttgtcacaaaag 39478585  T
Q  202 ttgtcatataaatgaatgtttaa 224  Q
    |||||||||| ||| ||||||||    
T  39478586 ttgtcatatatatggatgtttaa 39478608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 104 - 236
Target Start/End: Complemental strand, 31641585 - 31641453
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagtt 203  Q
    |||||||||| | |||||||||||||||||| ||||  || |||||| |||||||||| ||| | |||  |||||||||||||||| |||  ||||||||    
T  31641585 ctctcacactcacattatatttttactttctgtctccattgctttgatttttgtgtcactaccttatttcctttataaaattttggttgtcacaaaagtt 31641486  T
Q  204 gtcatataaatgaatgtttaaataatacaactc 236  Q
     |||  || ||||||||| |||||| |||||||    
T  31641485 atcacgtatatgaatgttcaaataacacaactc 31641453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 34616660 - 34616744
Alignment:
Q  152 ttttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgtttaaataatacaactc 236  Q
    |||||||||||||  ||||| ||||||||||||||||| ||| ||||||||||||||||||||  ||||| |||||| |||||||    
T  34616660 ttttgtgtcaatatctcattttctttataaaattttggttgtctcaaaagttgtcatataaatagatgttcaaataacacaactc 34616744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 152 - 233
Target Start/End: Complemental strand, 19473928 - 19473847
Alignment:
Q  152 ttttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgtttaaataatacaa 233  Q
    |||||||||||||||||||| ||||| ||||||||||  ||| ||||||||||||||||||||| || || |||||| ||||    
T  19473928 ttttgtgtcaatacttcattttctttgtaaaattttgattgtctcaaaagttgtcatataaatgcatcttcaaataacacaa 19473847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 104 - 236
Target Start/End: Original strand, 29175278 - 29175408
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagtt 203  Q
    |||||| ||| | ||||| |||||||||||||||||  || |||||  |||||||||||||  |||||  |||| ||||||||||| |||  ||||||||    
T  29175278 ctctcatactcacattatctttttactttctctctc--ttgctttggtttttgtgtcaatagctcatttactttgtaaaattttggttgtcacaaaagtt 29175375  T
Q  204 gtcatataaatgaatgtttaaataatacaactc 236  Q
    |||| ||| ||||||||| |||||| |||||||    
T  29175376 gtcacatatatgaatgttcaaataacacaactc 29175408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 115 - 236
Target Start/End: Original strand, 42853639 - 42853760
Alignment:
Q  115 atattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaat 214  Q
    ||||||| |||| ||||||||||||  || |||||  |||||||||||||| ||||| ||||||||||||||||  ||| |||||| ||||||   ||||    
T  42853639 atattatgttttcactttctctctctattgctttggtttttgtgtcaatacctcattttctttataaaattttgattgtctcaaaaattgtcactcaaat 42853738  T
Q  215 gaatgtttaaataatacaactc 236  Q
    | ||||| |||||| |||||||    
T  42853739 ggatgttcaaataacacaactc 42853760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 117 - 237
Target Start/End: Complemental strand, 7632468 - 7632348
Alignment:
Q  117 attatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatga 216  Q
    |||||||||||||||||||||||  || |||||| ||||||| ||||   ||||| | ||| ||||||||||| |||| |||| |||||||||||||       
T  7632468 attatatttttactttctctctctattgctttgatttttgtgccaatcactcattttatttgtaaaattttggttgttgcaaaggttgtcatataaaatg 7632369  T
Q  217 atgtttaaataatacaactca 237  Q
    ||||| |||||| ||||||||    
T  7632368 atgttcaaataacacaactca 7632348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 124 - 236
Target Start/End: Original strand, 39440555 - 39440667
Alignment:
Q  124 ttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgttta 223  Q
    ||||||||||||||||  || |||||| |||||||||| ||| |||||  |||| ||||||||||  |||  |||||||||||| ||| ||||||||| |    
T  39440555 ttttactttctctctctattgctttgatttttgtgtcactacctcatttcctttctaaaattttgattgtcacaaaagttgtcacatatatgaatgttca 39440654  T
Q  224 aataatacaactc 236  Q
    ||||| |||||||    
T  39440655 aataacacaactc 39440667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 104 - 241
Target Start/End: Original strand, 44539787 - 44539922
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagtt 203  Q
    |||||| ||||||||||| |||||| |||||||||   || |||||  ||||||| || ||| |||||  |||| ||||||||||| |||  ||||||||    
T  44539787 ctctcatacttatattatctttttattttctctcta--ttgctttggtttttgtgacactacctcatttcctttgtaaaattttggttgtcacaaaagtt 44539884  T
Q  204 gtcatataaatgaatgtttaaataatacaactcataat 241  Q
    |||| ||| ||||||||| |||||| ||||||| ||||    
T  44539885 gtcacatatatgaatgttcaaataacacaactcttaat 44539922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 104 - 233
Target Start/End: Complemental strand, 10250535 - 10250406
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagtt 203  Q
    |||||| ||| | ||||| |||||||||||||||||  || |||||  ||||||| || ||||||||| ||||| ||||||||||| |||  ||||||||    
T  10250535 ctctcatactcacattatctttttactttctctctctattgctttggtttttgtgccactacttcattttctttgtaaaattttggttgtcacaaaagtt 10250436  T
Q  204 gtcatataaatgaatgtttaaataatacaa 233  Q
    |||  ||| ||| ||||| |||||| ||||    
T  10250435 gtcgcatatatggatgttcaaataacacaa 10250406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 104 - 233
Target Start/End: Complemental strand, 24575871 - 24575742
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagtt 203  Q
    |||||| ||||| ||| | |||||||||||||||||  || |||||  ||||||| |||||| |||||  |||||||||||||||| |||  ||||||||    
T  24575871 ctctcatacttacattgtctttttactttctctctctattgctttggtttttgtgccaatacctcatttcctttataaaattttggttgtcacaaaagtt 24575772  T
Q  204 gtcatataaatgaatgtttaaataatacaa 233  Q
    |||| ||| ||  ||||| |||||| ||||    
T  24575771 gtcacatatatagatgttcaaataacacaa 24575742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 104 - 189
Target Start/End: Original strand, 37997305 - 37997390
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttgg 189  Q
    |||||| ||| | ||||| |||||||||||||||||  || |||||| |||||||||||||| ||||| ||||| |||||||||||    
T  37997305 ctctcatactcacattatctttttactttctctctctattgctttgatttttgtgtcaatacctcattttctttgtaaaattttgg 37997390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 118 - 226
Target Start/End: Complemental strand, 10474118 - 10474010
Alignment:
Q  118 ttatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaa 217  Q
    ||||||||||||||| ||||||  ||||||||| ||||||||||||||||| || ||||| |||| || ||| |||   ||||||||| || |||||||     
T  10474118 ttatatttttactttttctctctattactttgatttttgtgtcaatacttctttttctttgtaaatttatggttgtcataaaagttgtaatctaaatgag 10474019  T
Q  218 tgtttaaat 226  Q
    |||| ||||    
T  10474018 tgttcaaat 10474010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 233
Target Start/End: Original strand, 11068752 - 11068868
Alignment:
Q  117 attatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatga 216  Q
    ||||| |||||||||||||||||  || |||||| |||||||||| | | |||||  |||| ||||||||||| ||   |||||||||||| ||| ||||    
T  11068752 attatctttttactttctctctctattgctttgatttttgtgtcactgcctcatttcctttgtaaaattttggttgccacaaaagttgtcacatatatga 11068851  T
Q  217 atgtttaaataatacaa 233  Q
    ||||| |||||| ||||    
T  11068852 atgttcaaataacacaa 11068868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 214
Target Start/End: Complemental strand, 32130246 - 32130149
Alignment:
Q  115 atattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaat 214  Q
    ||||||||| ||||||||||||||  ||  |||| | |||||| ||||||| ||||| ||||| || |||||||| |||||||||||||| |||||||||    
T  32130246 atattatatctttactttctctctattt--ctttaatttttgtatcaatacatcattttctttgtataattttggttgtttcaaaagttgacatataaat 32130149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 104 - 236
Target Start/End: Original strand, 37297100 - 37297231
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagtt 203  Q
    |||||| ||| | ||||| |||||||||||||||||  || |||||  |||||||||| ||| ||||| || || ||||||||||| |||  ||||||||    
T  37297100 ctctcatactcacattatctttttactttctctctctattgctttggtttttgtgtcactacctcatt-tccttgtaaaattttggttgtcacaaaagtt 37297198  T
Q  204 gtcatataaatgaatgtttaaataatacaactc 236  Q
    |||| ||| ||| ||||| |||||| |||||||    
T  37297199 gtcaaatatatggatgttcaaataacacaactc 37297231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 117 - 236
Target Start/End: Complemental strand, 50721751 - 50721632
Alignment:
Q  117 attatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatga 216  Q
    |||||||||||||||||||||||   | |||||  ||||||||||||   ||||| ||||| ||||||||| | |||| |||| |||||||||||||       
T  50721751 attatatttttactttctctctctactgctttggtttttgtgtcaatcactcattttctttgtaaaattttagttgttgcaaaggttgtcatataaaatg 50721652  T
Q  217 atgtttaaataatacaactc 236  Q
    ||||| |||||| |||||||    
T  50721651 atgttcaaataacacaactc 50721632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 233
Target Start/End: Complemental strand, 49449090 - 49449036
Alignment:
Q  179 taaaattttggatgtttcaaaagttgtcatataaatgaatgtttaaataatacaa 233  Q
    ||||||||||| ||| | |||||||||||||||||||||||||||||||| ||||    
T  49449090 taaaattttggttgtcttaaaagttgtcatataaatgaatgtttaaataacacaa 49449036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 237
Target Start/End: Complemental strand, 53801731 - 53801646
Alignment:
Q  152 ttttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgtttaaataatacaactca 237  Q
    |||||||||||||| |||||  |||| ||||||||||| |||  |||||||||||| ||| ||| ||||| |||||| ||||||||    
T  53801731 ttttgtgtcaatacctcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactca 53801646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 236
Target Start/End: Complemental strand, 515617 - 515533
Alignment:
Q  152 ttttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgtttaaataatacaactc 236  Q
    ||||||||||||||  |||| |||||||||| || ||  | |||||||||||||||||||||| ||| || |||||| |||||||    
T  515617 ttttgtgtcaataccacattttctttataaatttatgattatttcaaaagttgtcatataaataaatattcaaataacacaactc 515533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 104 - 236
Target Start/End: Original strand, 26732276 - 26732408
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagtt 203  Q
    |||||| ||| | ||||| |||||| ||||||||||  ||  ||||  ||||||| || ||| ||||| ||||| ||||||||||| |||  ||||||||    
T  26732276 ctctcatactcacattatctttttattttctctctctattgttttggtttttgtgccactacctcattttctttgtaaaattttggttgtcacaaaagtt 26732375  T
Q  204 gtcatataaatgaatgtttaaataatacaactc 236  Q
    |||| ||| ||| ||||| |||||| |||||||    
T  26732376 gtcacatatatggatgttcaaataacacaactc 26732408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 104 - 236
Target Start/End: Original strand, 51986093 - 51986225
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagtt 203  Q
    |||||| ||| | ||||| |||||||||||||| ||  || |||||  ||||||| || ||| |||||  |||| ||||||||||| |||  ||||||||    
T  51986093 ctctcatactcacattatctttttactttctctatctatttctttggtttttgtgccactacctcatttcctttgtaaaattttggttgtcacaaaagtt 51986192  T
Q  204 gtcatataaatgaatgtttaaataatacaactc 236  Q
    |||| ||| ||| ||||| |||||| |||||||    
T  51986193 gtcacatatatggatgttcaaataacacaactc 51986225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 243
Target Start/End: Original strand, 39606079 - 39606162
Alignment:
Q  160 caatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgtttaaataatacaactcataataa 243  Q
    ||||| ||||||  |||||||||||||||| | |   ||||||||||| ||| || |||||| |||||||||||||||||||||    
T  39606079 caatatttcatttcctttataaaattttggttatcgtaaaagttgtcacatatataaatgttcaaataatacaactcataataa 39606162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 36123479 - 36123425
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtg 158  Q
    |||||| ||||| |||||||||||||||||||||||  ||||||||| |||||||    
T  36123479 ctctcatacttacattatatttttactttctctctctattactttgatttttgtg 36123425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 238
Target Start/End: Original strand, 43175035 - 43175169
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagtt 203  Q
    |||||| ||| | ||||| |||||||||||||||||  |  |||||  |||||||||| ||| |||||  |||| ||||||||||  | |  ||||||||    
T  43175035 ctctcatactcacattatttttttactttctctctctatggctttggtttttgtgtcactacctcatttcctttgtaaaattttgattatcacaaaagtt 43175134  T
Q  204 gtcatataaatgaatgtttaaataatacaactcat 238  Q
    |||| ||| ||| ||||| |||||| |||||||||    
T  43175135 gtcacatatatggatgttcaaataacacaactcat 43175169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 122 - 214
Target Start/End: Complemental strand, 11672123 - 11672033
Alignment:
Q  122 atttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaat 214  Q
    |||||||||||||||||   || |||||| ||||||||||||| || ||| |||||||||||||||   |||  |||||||||| ||||||||    
T  11672123 atttttactttctctcta--ttgctttgatttttgtgtcaataatttattttctttataaaattttaagtgtcacaaaagttgtaatataaat 11672033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 236
Target Start/End: Original strand, 15175608 - 15175729
Alignment:
Q  115 atattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaat 214  Q
    ||||||| |||||||||| ||| ||  || ||||   |||||||  ||||| |||||  |||| ||||||||||| |||  |||||||||||| ||| ||    
T  15175608 atattatctttttactttatctttctattgcttttgtttttgtgctaatacctcatttcctttgtaaaattttggttgtaacaaaagttgtcacatatat 15175707  T
Q  215 gaatgtttaaataatacaactc 236  Q
    | ||||| ||||||||||||||    
T  15175708 ggatgttcaaataatacaactc 15175729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 221
Target Start/End: Complemental strand, 27354374 - 27354257
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagtt 203  Q
    |||||| ||| | ||||| |||||||||| ||||||  ||  ||||| ||||||  |||| ||||||| | ||| ||||||||||| ||| | |||| ||    
T  27354374 ctctcatactcacattatgtttttactttttctctcaattgttttgatttttgtaccaatccttcattttttttgtaaaattttggttgtcttaaaattt 27354275  T
Q  204 gtcatataaatgaatgtt 221  Q
    |||||||||||| |||||    
T  27354274 gtcatataaatggatgtt 27354257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 236
Target Start/End: Complemental strand, 19232153 - 19232022
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagtt 203  Q
    |||||| ||| | |||||||||||||||||||||||  || |||||| ||||||| ||||||||  || |||||  |||||||||| |||   |||| ||    
T  19232153 ctctcatactcacattatatttttactttctctctctattgctttgatttttgtgccaatactt-tttttctttgcaaaattttggttgtactaaaaatt 19232055  T
Q  204 gtcatataaatgaatgtttaaataatacaactc 236  Q
    |||| |||| ||  |||| |||||| |||||||    
T  19232054 gtcacataattggttgttcaaataacacaactc 19232022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 228
Target Start/End: Complemental strand, 27051058 - 27050982
Alignment:
Q  152 ttttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgtttaaataa 228  Q
    |||||||||||||  ||||| ||||| ||||||||||| |||  |||||||||||| ||  ||||||||| ||||||    
T  27051058 ttttgtgtcaatatctcattttctttgtaaaattttggttgtcacaaaagttgtcacatttatgaatgttcaaataa 27050982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 236
Target Start/End: Complemental strand, 23369339 - 23369220
Alignment:
Q  117 attatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatga 216  Q
    ||||| |||||||||| ||||||  || |||||  ||||||| || ||| |||||  |||| ||| ||||||| |||  |||||||||||| ||| |||     
T  23369339 attatctttttactttatctctctattgctttggtttttgtgccactacctcatttcctttgtaagattttggttgtcacaaaagttgtcacatatatgg 23369240  T
Q  217 atgtttaaataatacaactc 236  Q
    ||||| |||||| |||||||    
T  23369239 atgttcaaataacacaactc 23369220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 104 - 207
Target Start/End: Complemental strand, 38381096 - 38380993
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagtt 203  Q
    |||||| ||||| ||||| |||||| ||||||||||  || |||||| ||||||  |||||| || || ||||||| ||||| ||| ||| | |||||||    
T  38381096 ctctcatacttacattatgtttttattttctctctctattgctttgatttttgtaccaatacctctttttctttatgaaattatggttgtcttaaaagtt 38380997  T
Q  204 gtca 207  Q
    ||||    
T  38380996 gtca 38380993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 104 - 207
Target Start/End: Original strand, 40348845 - 40348948
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagtt 203  Q
    |||||| ||| | ||||| |||||||||||||||||  || |||||  |||||||||| ||  ||||| |||||| |||||||||  |||  ||||||||    
T  40348845 ctctcatactcacattatctttttactttctctctctattgctttggtttttgtgtcactatctcattttctttaaaaaattttgattgtcacaaaagtt 40348944  T
Q  204 gtca 207  Q
    ||||    
T  40348945 gtca 40348948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 104 - 187
Target Start/End: Original strand, 46634151 - 46634234
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaatttt 187  Q
    |||||| ||| | ||||| |||||||||||||| ||  ||||||||| |||||||||| ||| |||||  |||| |||||||||    
T  46634151 ctctcatactcacattatctttttactttctctttctattactttgatttttgtgtcactacctcatttcctttgtaaaatttt 46634234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 125 - 236
Target Start/End: Complemental strand, 50831754 - 50831643
Alignment:
Q  125 tttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgtttaa 224  Q
    |||||||||||||||  || |||||| ||||||||||| || || || ||||| ||||||| ||| |||  ||||||||||||   |||||  |||| ||    
T  50831754 tttactttctctctctattgctttgatttttgtgtcaagacctctttttctttgtaaaattatggttgtcccaaaagttgtcaatcaaatggttgttcaa 50831655  T
Q  225 ataatacaactc 236  Q
    |||| |||||||    
T  50831654 ataacacaactc 50831643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 165
Target Start/End: Complemental strand, 11546909 - 11546859
Alignment:
Q  115 atattatatttttactttctctctcgtttactttgaattttgtgtcaatac 165  Q
    |||||||||||||||||||||||||  |||||||||  |||||| ||||||    
T  11546909 atattatatttttactttctctctctattactttgatatttgtgccaatac 11546859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 187
Target Start/End: Complemental strand, 50608631 - 50608561
Alignment:
Q  117 attatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaatttt 187  Q
    ||||| ||||||||| |||||||  ||||||||| |||||||||||||  |||||  |||| |||||||||    
T  50608631 attatttttttacttcctctctctattactttgatttttgtgtcaatatctcatttcctttgtaaaatttt 50608561  T

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Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 237
Target Start/End: Complemental strand, 5233622 - 5233557
Alignment:
Q  172 ctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgtttaaataatacaactca 237  Q
    |||||| ||||||||||  ||||||||||||||| | ||||||  ||||| |||||| ||||||||    
T  5233622 ctctttgtaaaattttgattgtttcaaaagttgttacataaatagatgttcaaataacacaactca 5233557  T

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Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 117 - 162
Target Start/End: Original strand, 16019541 - 16019586
Alignment:
Q  117 attatatttttactttctctctcgtttactttgaattttgtgtcaa 162  Q
    |||||||||||||||||||||||  || |||||| |||||||||||    
T  16019541 attatatttttactttctctctctattgctttgatttttgtgtcaa 16019586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 115 - 187
Target Start/End: Complemental strand, 26908092 - 26908019
Alignment:
Q  115 atattatatttttactttctctctcgtttactttga-attttgtgtcaatacttcattctctttataaaatttt 187  Q
    ||||||||||||||||||||||||   || ||||||  |||||||| | ||||||||| | |||||||||||||    
T  26908092 atattatatttttactttctctctatattgctttgattttttgtgttactacttcattatttttataaaatttt 26908019  T

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Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 117 - 238
Target Start/End: Original strand, 46213034 - 46213155
Alignment:
Q  117 attatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatga 216  Q
    ||||| |||||||||| ||||||  || |||||  |||||||  | ||| |||||  |||| ||||||||||| |||| |||||||| ||| ||| |||     
T  46213034 attatctttttactttttctctctgttgctttggtttttgtgcaactacctcatttcctttgtaaaattttggttgttacaaaagttttcacatatatgg 46213133  T
Q  217 atgtttaaataatacaactcat 238  Q
    || || |||||| |||||||||    
T  46213134 attttcaaataacacaactcat 46213155  T

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Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 165
Target Start/End: Original strand, 49585046 - 49585107
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatac 165  Q
    |||||| ||| | |||||||||||||||||||||||  |||||||||  |||||| ||||||    
T  49585046 ctctcatactcacattatatttttactttctctctctattactttgatatttgtgccaatac 49585107  T

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Target: chr4; HSP #47
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 236
Target Start/End: Original strand, 36177957 - 36178089
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagtt 203  Q
    |||||| ||| | ||||| |||||||||||| ||||  || |||||  ||||||  || ||| |||||  |||||||||||||| | |||  ||||||||    
T  36177957 ctctcatactcacattatctttttactttctttctctattgctttggtttttgtaccactacctcatttcctttataaaattttagttgtcacaaaagtt 36178056  T
Q  204 gtcatataaatgaatgtttaaataatacaactc 236  Q
     ||| ||| || |||||| |||||| |||||||    
T  36178057 atcacatatataaatgttcaaataacacaactc 36178089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 53)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 21217611 - 21217695
Alignment:
Q  152 ttttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgtttaaataatacaactc 236  Q
    |||||||||||||| ||||| ||||||||||||||||| ||| ||||||||||||||||||||| ||||| |||||| |||||||    
T  21217611 ttttgtgtcaatacctcattttctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactc 21217695  T

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Target: chr3; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 104 - 236
Target Start/End: Complemental strand, 35377101 - 35376969
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagtt 203  Q
    |||||||||| | ||||| |||||||||||| ||||  || |||||| ||||||| |||||| ||||| ||||| ||||||||||| |||  ||||||||    
T  35377101 ctctcacactcacattatgtttttactttctttctctattgctttgatttttgtgccaatacatcattttctttgtaaaattttggttgtcacaaaagtt 35377002  T
Q  204 gtcatataaatgaatgtttaaataatacaactc 236  Q
    ||||| |||||| ||||| |||||| |||||||    
T  35377001 gtcatctaaatggatgttcaaataacacaactc 35376969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 152 - 235
Target Start/End: Original strand, 23592557 - 23592640
Alignment:
Q  152 ttttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgtttaaataatacaact 235  Q
    |||||||||||||| ||||| ||||||||||||||||| ||| ||||||||||||||||||||| ||||| |||||| ||||||    
T  23592557 ttttgtgtcaatacctcattttctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaact 23592640  T

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Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 44383288 - 44383372
Alignment:
Q  152 ttttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgtttaaataatacaactc 236  Q
    |||||||||||||| ||||| ||||||||||||||||  ||| ||||||||||||||||||||| ||||| |||||| |||||||    
T  44383288 ttttgtgtcaatacctcattttctttataaaattttgattgtctcaaaagttgtcatataaatggatgttcaaataacacaactc 44383372  T

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Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 116 - 228
Target Start/End: Complemental strand, 11630756 - 11630646
Alignment:
Q  116 tattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatg 215  Q
    |||||||||||||||||||||||   ||||||||  |||| | ||||||||||||| ||||| |||||||||   ||| |||||| ||||||||||||||    
T  11630756 tattatatttttactttctctcta--ttactttggtttttatatcaatacttcattttctttgtaaaattttaattgtctcaaaaattgtcatataaatg 11630659  T
Q  216 aatgtttaaataa 228  Q
    |||||| ||||||    
T  11630658 aatgttcaaataa 11630646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 111 - 236
Target Start/End: Original strand, 51982157 - 51982282
Alignment:
Q  111 acttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatat 210  Q
    ||||||||||| |||||||||||||||||  || ||||   |||||||||||||| | ||| ||||||||||||||| | ||| |||||| |||| ||||    
T  51982157 acttatattatgtttttactttctctctctattgctttagtttttgtgtcaataccttattttctttataaaattttagttgtctcaaaaattgttatat 51982256  T
Q  211 aaatgaatgtttaaataatacaactc 236  Q
    ||||| || || |||||| |||||||    
T  51982257 aaatggattttcaaataacacaactc 51982282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 152 - 236
Target Start/End: Complemental strand, 37057029 - 37056945
Alignment:
Q  152 ttttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgtttaaataatacaactc 236  Q
    |||||||||||||| ||||| ||||| |||||| |||| ||| ||||||||||||||||||||| ||||| |||||| |||||||    
T  37057029 ttttgtgtcaatacctcattttctttgtaaaatattggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactc 37056945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 162 - 235
Target Start/End: Original strand, 23600702 - 23600775
Alignment:
Q  162 atacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgtttaaataatacaact 235  Q
    |||| ||||| ||||||||||||||||| ||| ||||||||||||||||||||| ||||| |||||| ||||||    
T  23600702 atacntcattttctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaact 23600775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 105 - 235
Target Start/End: Complemental strand, 28539759 - 28539629
Alignment:
Q  105 tctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttg 204  Q
    ||||||||| ||||||| |||||||||||||||||  || |||||| ||||||| ||| || ||||| |||||  |||||||||| | |  ||||||||     
T  28539759 tctcacactcatattatgtttttactttctctctctattgctttgacttttgtgccaaaacatcattttctttgcaaaattttggttatcacaaaagtta 28539660  T
Q  205 tcatataaatgaatgtttaaataatacaact 235  Q
    |||| |||||| ||||| |||||| ||||||    
T  28539659 tcatctaaatggatgttcaaataacacaact 28539629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 123 - 228
Target Start/End: Complemental strand, 13348135 - 13348030
Alignment:
Q  123 tttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgttt 222  Q
    ||||||| |||||||||  || |||||  |||||| ||||||| ||||| ||||| ||||||||||| |||  |||||||||||||||||||| |||||     
T  13348135 tttttaccttctctctctattgctttggtttttgtatcaatacctcattttctttgtaaaattttggttgtcccaaaagttgtcatataaatggatgttc 13348036  T
Q  223 aaataa 228  Q
    ||||||    
T  13348035 aaataa 13348030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 104 - 236
Target Start/End: Original strand, 5114129 - 5114261
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagtt 203  Q
    |||||||||| | ||||| |||||||||||||||||  || |||||| |||||||||| ||| ||||| ||||| ||||||||||  |||   |||| ||    
T  5114129 ctctcacactcacattatctttttactttctctctctattgctttgatttttgtgtcactacctcattttctttgtaaaattttgattgtcataaaaatt 5114228  T
Q  204 gtcatataaatgaatgtttaaataatacaactc 236  Q
    |||| ||||||  ||||| |||||| |||||||    
T  5114229 gtcacataaatagatgttcaaataacacaactc 5114261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 104 - 207
Target Start/End: Complemental strand, 45711459 - 45711356
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagtt 203  Q
    |||||| ||| | ||||| |||||||||||||||||  ||  ||||  | |||||||||||||||||| ||||| ||||||||||| |||| ||||||||    
T  45711459 ctctcatactcacattatctttttactttctctctctattgttttggttattgtgtcaatacttcattttctttgtaaaattttggttgttacaaaagtt 45711360  T
Q  204 gtca 207  Q
    ||||    
T  45711359 gtca 45711356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 104 - 236
Target Start/End: Complemental strand, 6178445 - 6178313
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagtt 203  Q
    |||||| ||| | ||||| |||||||||||||||||  || |||||| ||||||||||||||  | || |||||| ||| || ||| ||| || ||||||    
T  6178445 ctctcatactcacattatgtttttactttctctctctattgctttgatttttgtgtcaataccactttttctttacaaatttatggttgtatcgaaagtt 6178346  T
Q  204 gtcatataaatgaatgtttaaataatacaactc 236  Q
    |||||| |||||  |||| |||||| |||||||    
T  6178345 gtcataaaaatggttgttcaaataacacaactc 6178313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 152 - 236
Target Start/End: Complemental strand, 25641555 - 25641471
Alignment:
Q  152 ttttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgtttaaataatacaactc 236  Q
    ||||||| |||||| | ||| ||| | ||||| ||||| ||| ||||||||||||||||||||| ||||| ||||||||||||||    
T  25641555 ttttgtgccaataccttattttctatgtaaaactttggttgtctcaaaagttgtcatataaatggatgttcaaataatacaactc 25641471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 104 - 236
Target Start/End: Complemental strand, 27541522 - 27541390
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagtt 203  Q
    |||||| ||| | ||||| |||||||||||||||||  || |||||  ||||||| || ||| |||||  |||| ||||||||||| |||  ||||||||    
T  27541522 ctctcatactcacattatctttttactttctctctctattgctttggtttttgtgccactacctcatttcctttgtaaaattttggttgtcacaaaagtt 27541423  T
Q  204 gtcatataaatgaatgtttaaataatacaactc 236  Q
    |||| ||| ||| ||||| |||||| |||||||    
T  27541422 gtcacatatatggatgttcaaataacacaactc 27541390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 173 - 237
Target Start/End: Original strand, 42997405 - 42997469
Alignment:
Q  173 tctttataaaattttggatgtttcaaaagttgtcatataaatgaatgtttaaataatacaactca 237  Q
    |||||||| |||||||| ||| | |||||||||||||||||||||||||||||||| ||| ||||    
T  42997405 tctttatacaattttggttgtcttaaaagttgtcatataaatgaatgtttaaataacacagctca 42997469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 236
Target Start/End: Original strand, 41309187 - 41309300
Alignment:
Q  123 tttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgttt 222  Q
    |||||||||||||||||  || |||||| |||||||||| ||| ||||| ||||| ||||||||||  |||  |||||||| ||  ||| ||| |||||     
T  41309187 tttttactttctctctctattgctttgatttttgtgtcactacctcattttctttgtaaaattttgattgtcacaaaagttatcgcatatatggatgttc 41309286  T
Q  223 aaataatacaactc 236  Q
    |||||| |||||||    
T  41309287 aaataacacaactc 41309300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 233
Target Start/End: Complemental strand, 42358658 - 42358529
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagtt 203  Q
    |||||| ||| | ||||| |||||||||| ||||||  || |||||| |||||||||||||| |||||  ||||  |||||||||  |||  ||||||||    
T  42358658 ctctcatactcacattatctttttactttatctctctattgctttgatttttgtgtcaatacctcatttcctttgcaaaattttgattgtcacaaaagtt 42358559  T
Q  204 gtcatataaatgaatgtttaaataatacaa 233  Q
    |||| ||| ||| ||||| |||||| ||||    
T  42358558 gtcacatatatggatgttcaaataacacaa 42358529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 236
Target Start/End: Original strand, 42889055 - 42889168
Alignment:
Q  123 tttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgttt 222  Q
    |||||||||  ||||||  || |||||  ||||||| |||||  ||||| ||||| ||||||||||| | | |||||||||||||| |||||  ||||||    
T  42889055 tttttacttattctctctgttgctttggtttttgtgccaataactcattttctttgtaaaattttggttatatcaaaagttgtcatctaaatagatgttt 42889154  T
Q  223 aaataatacaactc 236  Q
    |||||| |||||||    
T  42889155 aaataacacaactc 42889168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 124 - 236
Target Start/End: Complemental strand, 55151717 - 55151605
Alignment:
Q  124 ttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgttta 223  Q
    ||||||||||||||||   | |||||  ||||||||||||||||||||  |||| |||||||||   |||  |||||||||||| ||| || |||||| |    
T  55151717 ttttactttctctctctagtgctttggtttttgtgtcaatacttcatttcctttgtaaaattttaattgtaacaaaagttgtcacatatataaatgttca 55151618  T
Q  224 aataatacaactc 236  Q
    ||||| |||||||    
T  55151617 aataacacaactc 55151605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 235
Target Start/End: Original strand, 35597213 - 35597344
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagtt 203  Q
    |||||| ||| | ||||| |||||||||||||||||  ||  ||||  |||||||||| ||| || ||  |||| ||||||||||| |||  ||||||||    
T  35597213 ctctcatactcacattatttttttactttctctctctattgttttggtttttgtgtcactacctcgtttcctttgtaaaattttggttgtcacaaaagtt 35597312  T
Q  204 gtcatataaatgaatgtttaaataatacaact 235  Q
    |||| ||| |||||| || |||||| ||||||    
T  35597313 gtcacatatatgaatattcaaataacacaact 35597344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 238
Target Start/End: Original strand, 5244280 - 5244414
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagtt 203  Q
    |||||| ||| | ||||| |||||||||||||||||  || |||||  ||||||| || ||| |||||  |||| ||||||||||| |||  ||||| ||    
T  5244280 ctctcatactcacattatttttttactttctctctctattgctttggtttttgtgccactacctcatttcctttgtaaaattttggttgtcacaaaaatt 5244379  T
Q  204 gtcatataaatgaatgtttaaataatacaactcat 238  Q
    |||| ||| || |||||| |||||| ||| |||||    
T  5244380 gtcacatatataaatgttcaaataacacacctcat 5244414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 234
Target Start/End: Original strand, 44463408 - 44463538
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagtt 203  Q
    |||||| ||| | |||||||||||| ||||||| ||  ||||||||| |||||| ||||||   |||| ||||| ||||||||||  | | |||||||||    
T  44463408 ctctcatactcacattatatttttattttctctttctgttactttgatttttgtatcaatatcacattttctttgtaaaattttgattatctcaaaagtt 44463507  T
Q  204 gtcatataaatgaatgtttaaataatacaac 234  Q
     |||||||| |  ||||| |||||| |||||    
T  44463508 atcatataatttgatgttcaaataacacaac 44463538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 239
Target Start/End: Complemental strand, 51465720 - 51465626
Alignment:
Q  145 ctttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgtttaaataatacaactcata 239  Q
    |||||| ||||||||||||| |||||| | ||| ||| | ||||| ||| | |||| || |||||||||| ||||||||||| | ||||||||||    
T  51465720 ctttgatttttgtgtcaatatttcattttttttttaagactttggttgtctaaaaaattatcatataaataaatgtttaaatgacacaactcata 51465626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 207
Target Start/End: Complemental strand, 20547996 - 20547907
Alignment:
Q  118 ttatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtca 207  Q
    |||| |||||||||||||||||  || |||||| ||||||| || ||| |||||  |||| ||||||||||| |||  ||||||||||||    
T  20547996 ttatctttttactttctctctctattgctttgatttttgtgccactacctcatttcctttgtaaaattttggttgtcacaaaagttgtca 20547907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 233
Target Start/End: Complemental strand, 39629858 - 39629729
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagtt 203  Q
    |||||| ||| | ||||| |||||||||||||||||  ||  ||||| |||| |||||||| ||  || ||||||||||||||||| | |   |||||||    
T  39629858 ctctcatactcacattatgtttttactttctctctctattgttttgatttttatgtcaataatttcttttctttataaaattttggttatactaaaagtt 39629759  T
Q  204 gtcatataaatgaatgtttaaataatacaa 233  Q
    |||| |||| ||| |||| |||||| ||||    
T  39629758 gtcacataattgattgttcaaataacacaa 39629729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 123 - 236
Target Start/End: Original strand, 44856023 - 44856136
Alignment:
Q  123 tttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgttt 222  Q
    |||||||||||||||||  || |||||| ||||||| || ||| |||||  |||| ||||||||||| |||   | ||||||||| ||| ||| |||||     
T  44856023 tttttactttctctctctatttctttgatttttgtgccactacctcatttcctttgtaaaattttggttgtcatacaagttgtcacatatatggatgttc 44856122  T
Q  223 aaataatacaactc 236  Q
    |||||| |||||||    
T  44856123 aaataacacaactc 44856136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 165
Target Start/End: Original strand, 50314676 - 50314737
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatac 165  Q
    |||||| ||| | ||||| |||||||||||||||||  ||||||||| ||||||||||||||    
T  50314676 ctctcatactcacattatgtttttactttctctctctattactttgatttttgtgtcaatac 50314737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 123 - 236
Target Start/End: Original strand, 52939721 - 52939834
Alignment:
Q  123 tttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgttt 222  Q
    |||||||||||||||||  || |||||  ||||||| || ||| |||||  |||| ||||||||||| |||  | |||||||||| ||| ||| |||||     
T  52939721 tttttactttctctctctattgctttggtttttgtgccactacctcatttcctttgtaaaattttggttgtcacgaaagttgtcacatatatggatgttc 52939820  T
Q  223 aaataatacaactc 236  Q
    |||||| |||||||    
T  52939821 aaataacacaactc 52939834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 182
Target Start/End: Complemental strand, 55361240 - 55361175
Alignment:
Q  117 attatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaa 182  Q
    ||||| |||||||||||||||||  || |||||  |||||||||||||||||||| ||||| ||||    
T  55361240 attatttttttactttctctctctattgctttggtttttgtgtcaatacttcattttctttgtaaa 55361175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 236
Target Start/End: Complemental strand, 32924253 - 32924169
Alignment:
Q  152 ttttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgtttaaataatacaactc 236  Q
    |||||||||| ||| |||||  |||| ||||||||||| |||  |||||||||||| ||| ||| ||||| |||||| |||||||    
T  32924253 ttttgtgtcactacctcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactc 32924169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 239
Target Start/End: Complemental strand, 37503748 - 37503632
Alignment:
Q  123 tttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgttt 222  Q
    |||||||||||| | ||  || |||||| |||||||||||||  |||||  ||||  |||||||||| |||  |||||||| ||| ||| || ||||||     
T  37503748 tttttactttctttttctattgctttgatttttgtgtcaatatctcatttcctttgcaaaattttggttgtcacaaaagttatcacatatataaatgttc 37503649  T
Q  223 aaataatacaactcata 239  Q
    |||||| ||||||||||    
T  37503648 aaataacacaactcata 37503632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 236
Target Start/End: Original strand, 38926679 - 38926811
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagtt 203  Q
    |||||| ||| | ||||| |||||||||||||||||  || |||||  |||||||||| ||| | |||  |||| ||||||||||| |||  | ||||||    
T  38926679 ctctcatactcacattatctttttactttctctctctattgctttggtttttgtgtcactaccttatttcctttgtaaaattttggttgtcacgaaagtt 38926778  T
Q  204 gtcatataaatgaatgtttaaataatacaactc 236  Q
    |||| ||| ||  ||||| |||||| |||||||    
T  38926779 gtcacatatatagatgttcaaataacacaactc 38926811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 240
Target Start/End: Complemental strand, 49087079 - 49086992
Alignment:
Q  152 ttttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgtttaaataatacaactcataa 240  Q
    |||||||||||||| ||||| |||||  |||||||||| |||||| |||||||||||| || | | | || |||||| |||||||||||    
T  49087079 ttttgtgtcaatacctcattttctttgaaaaattttggttgtttc-aaagttgtcataaaattaattattcaaataacacaactcataa 49086992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 104 - 239
Target Start/End: Complemental strand, 16969586 - 16969451
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagtt 203  Q
    |||||| ||| | ||||| |||||||||||||| ||  ||  ||||| |||| || || ||| |||||  |||| ||||||||| | |||  ||||||||    
T  16969586 ctctcatactcacattatctttttactttctctttctattgttttgatttttatgccactacctcatttcctttgtaaaattttagttgtcacaaaagtt 16969487  T
Q  204 gtcatataaatgaatgtttaaataatacaactcata 239  Q
    |||| ||| ||| ||||| |||||| ||||||||||    
T  16969486 gtcacatatatggatgttcaaataacacaactcata 16969451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 116 - 182
Target Start/End: Complemental strand, 35299880 - 35299816
Alignment:
Q  116 tattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaa 182  Q
    ||||||||||||| |||||||||   || |||||| |||||||||||||| ||||| ||||||||||    
T  35299880 tattatatttttattttctctcta--ttgctttgatttttgtgtcaatacctcattttctttataaa 35299816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 236
Target Start/End: Original strand, 33939300 - 33939421
Alignment:
Q  117 attatatttttactttctctctcgtt--tactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaat 214  Q
    ||||| |||||||||||||||||  |  | |||||  |||||||||| |||||||||  ||||  | |||||||| |||  |||||||||||| ||| ||    
T  33939300 attatctttttactttctctctctctattgctttggtttttgtgtcactacttcatttcctttgaataattttggttgtcacaaaagttgtcacatatat 33939399  T
Q  215 gaatgtttaaataatacaactc 236  Q
    | ||||| |||||| |||||||    
T  33939400 ggatgttcaaataacacaactc 33939421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 158
Target Start/End: Original strand, 52714785 - 52714839
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtg 158  Q
    |||||| ||||| |||||||||||||||||||||||  || |||||| |||||||    
T  52714785 ctctcatacttacattatatttttactttctctctctattgctttgatttttgtg 52714839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 237
Target Start/End: Original strand, 288777 - 288910
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagtt 203  Q
    |||||| ||| | ||||| |||||||||||||||||  || |||||  |||||||||| ||  |||||   ||| ||||||||||  |||| ||| ||||    
T  288777 ctctcatactcacattatttttttactttctctctctattgctttggtttttgtgtcactatctcatttcttttgtaaaattttgattgttacaatagtt 288876  T
Q  204 gtcatataaatgaatgtttaaataatacaactca 237  Q
    |||| ||| ||| || || |||||| ||||||||    
T  288877 gtcacatatatggattttcaaataacacaactca 288910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 237
Target Start/End: Complemental strand, 36671034 - 36670901
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagtt 203  Q
    |||||| ||| | ||||| |||||||||| ||||||  || |||||  ||||||| || ||| |||||   ||| ||||||||||| |||  ||||||||    
T  36671034 ctctcatactcacattatctttttactttttctctctattgctttggtttttgtgccactacctcatttcatttgtaaaattttggttgtcacaaaagtt 36670935  T
Q  204 gtcatataaatgaatgtttaaataatacaactca 237  Q
     ||| ||| ||| ||||| |||||| ||||||||    
T  36670934 atcacatatatggatgttcaaataacacaactca 36670901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 123 - 236
Target Start/End: Original strand, 37302616 - 37302729
Alignment:
Q  123 tttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgttt 222  Q
    |||||||||||||||||  ||||||||  ||||||| || ||| |||||  ||||  |||||||||  |||  |||||||||||| ||  ||| |||||     
T  37302616 tttttactttctctctctattactttggtttttgtgccactacctcatttcctttgcaaaattttgattgtcacaaaagttgtcaaatgtatggatgttc 37302715  T
Q  223 aaataatacaactc 236  Q
    |||||| |||||||    
T  37302716 aaataagacaactc 37302729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 189
Target Start/End: Original strand, 41505542 - 41505627
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttgg 189  Q
    |||||| ||| | ||||| |||||||||||||||||  || |||||  |||||||||| ||| |||||  |||| |||||||||||    
T  41505542 ctctcatactcacattatctttttactttctctctctattgctttggtttttgtgtcactacctcatttcctttgtaaaattttgg 41505627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 157
Target Start/End: Original strand, 48353048 - 48353101
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgt 157  Q
    |||||| ||| |||||||||||||||||||||||||  || |||||| ||||||    
T  48353048 ctctcatactcatattatatttttactttctctctctattgctttgatttttgt 48353101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 165
Target Start/End: Complemental strand, 48944730 - 48944669
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatac 165  Q
    |||||| ||| |||||| ||||||||||||||||||  |||||||||  |||||| ||||||    
T  48944730 ctctcatactcatattacatttttactttctctctctattactttgatatttgtgccaatac 48944669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 165
Target Start/End: Complemental strand, 49761206 - 49761145
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatac 165  Q
    |||||||||| | |||||||||||||||||||| ||  |||||||||  |||||| ||||||    
T  49761206 ctctcacactcacattatatttttactttctctttctattactttgatatttgtgccaatac 49761145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 123 - 236
Target Start/End: Complemental strand, 52254139 - 52254026
Alignment:
Q  123 tttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgttt 222  Q
    |||||||||||||||||  || |||||  |||||||||| ||| |||||  |||| ||||||||| | |||  ||||| |||||| ||| ||| |||||     
T  52254139 tttttactttctctctctattgctttggtttttgtgtcactacctcatttcctttgtaaaattttagttgtcacaaaaattgtcacatatatggatgttc 52254040  T
Q  223 aaataatacaactc 236  Q
    |||| | |||||||    
T  52254039 aaatgacacaactc 52254026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 236
Target Start/End: Complemental strand, 14226677 - 14226593
Alignment:
Q  152 ttttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgtttaaataatacaactc 236  Q
    ||||||||||||| |||||| ||||| ||||||||||  ||| | |||| |||| | |||| ||| |||| |||||| |||||||    
T  14226677 ttttgtgtcaatatttcattttctttgtaaaattttgattgtcttaaaaattgttacataattgattgttcaaataacacaactc 14226593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 236
Target Start/End: Original strand, 26014863 - 26014995
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagtt 203  Q
    |||||| ||| | ||||| |||||||||||||||||  ||  ||||  ||||||| |  ||| |||||  |||| ||||||||||| |||  ||||||||    
T  26014863 ctctcatactcacattatctttttactttctctctctattgttttggtttttgtgcccttacctcatttcctttgtaaaattttggttgtcacaaaagtt 26014962  T
Q  204 gtcatataaatgaatgtttaaataatacaactc 236  Q
    |||| ||  ||  |||||||||||| |||||||    
T  26014963 gtcacatgtatagatgtttaaataacacaactc 26014995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 189
Target Start/End: Complemental strand, 33791777 - 33791705
Alignment:
Q  117 attatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttgg 189  Q
    ||||| ||||||||||| |||||  ||  ||||| |||||||||||||| ||||| ||||| | |||||||||    
T  33791777 attatgtttttactttccctctctattgttttgacttttgtgtcaatacctcattttctttgtgaaattttgg 33791705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 236
Target Start/End: Complemental strand, 42357056 - 42356972
Alignment:
Q  152 ttttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgtttaaataatacaactc 236  Q
    |||||||||| ||| |||||  |||| ||||||||||| |||  ||||| |||||| ||| ||| ||||| |||||| |||||||    
T  42357056 ttttgtgtcactacctcatttcctttgtaaaattttggttgtcacaaaaattgtcacatatatggatgttcaaataacacaactc 42356972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 165
Target Start/End: Complemental strand, 45186558 - 45186510
Alignment:
Q  117 attatatttttactttctctctcgtttactttgaattttgtgtcaatac 165  Q
    |||||||||||||||||||||||  ||||||||| |||  |||||||||    
T  45186558 attatatttttactttctctctctattactttgattttcttgtcaatac 45186510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 227
Target Start/End: Complemental strand, 51305570 - 51305463
Alignment:
Q  117 attatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatga 216  Q
    ||||| |||||||||||||||||  ||||| |   ||||||||||||||    || ||||| |||| || ||||||| | ||||||||||||| ||||||    
T  51305570 attatgtttttactttctctctctattactat---ttttgtgtcaataccattttttctttgtaaatttatggatgtataaaaagttgtcataaaaatga 51305474  T
Q  217 atgtttaaata 227  Q
     |||| |||||    
T  51305473 ttgttcaaata 51305463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 249
Target Start/End: Original strand, 52326163 - 52326215
Alignment:
Q  197 aaaagttgtcatataaatgaatgtttaaataatacaactcataataaattttg 249  Q
    ||||||||||||||| ||| ||||| |||||| ||||||| ||||||| ||||    
T  52326163 aaaagttgtcatatatatggatgttcaaataacacaactcttaataaagtttg 52326215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 37)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 152 - 235
Target Start/End: Complemental strand, 41056719 - 41056636
Alignment:
Q  152 ttttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgtttaaataatacaact 235  Q
    |||||||||||||| ||||| ||||||||||||||||| ||| ||||||||||||||||||||| ||||| |||||| ||||||    
T  41056719 ttttgtgtcaatacctcattttctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaact 41056636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 152 - 236
Target Start/End: Complemental strand, 13333142 - 13333058
Alignment:
Q  152 ttttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgtttaaataatacaactc 236  Q
    |||||||||||||| ||||| ||||||||||||||||| ||| ||||||||||||||||||||  ||||| |||||| |||||||    
T  13333142 ttttgtgtcaatacatcattttctttataaaattttggttgtctcaaaagttgtcatataaatcgatgttcaaataacacaactc 13333058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 152 - 236
Target Start/End: Complemental strand, 25270554 - 25270470
Alignment:
Q  152 ttttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgtttaaataatacaactc 236  Q
    |||||||||||||| ||||| ||||||||||||||||| ||| || |||||||||||||||||| ||||| |||||| |||||||    
T  25270554 ttttgtgtcaatacctcattttctttataaaattttggttgtctcgaaagttgtcatataaatggatgttcaaataacacaactc 25270470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 104 - 236
Target Start/End: Complemental strand, 27490750 - 27490618
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagtt 203  Q
    |||||||||| ||||||| |||||| ||||||||||  || |||||| |||||||| ||||| ||||| ||||| ||||||||||  |||  ||||||||    
T  27490750 ctctcacactcatattatgtttttaatttctctctctattgctttgatttttgtgttaatacatcattttctttgtaaaattttgattgtcacaaaagtt 27490651  T
Q  204 gtcatataaatgaatgtttaaataatacaactc 236  Q
    |||||  ||||| ||||| |||||| |||||||    
T  27490650 gtcatcaaaatggatgttcaaataacacaactc 27490618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 117 - 228
Target Start/End: Original strand, 19642662 - 19642773
Alignment:
Q  117 attatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatga 216  Q
    ||||| |||| ||||||||||||  || |||||| |||||||||||| ||||||| |||||  |||||| ||| ||| ||||||||| |||||||||||     
T  19642662 attatgttttcactttctctctctattgctttgatttttgtgtcaatgcttcattttctttgcaaaattgtggttgtctcaaaagttctcatataaatgg 19642761  T
Q  217 atgtttaaataa 228  Q
    ||||||||||||    
T  19642762 atgtttaaataa 19642773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 152 - 236
Target Start/End: Complemental strand, 3097833 - 3097749
Alignment:
Q  152 ttttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgtttaaataatacaactc 236  Q
    |||||||| ||||  ||||| ||||||||||||||||| ||| ||||||||||||||||||||| ||||| |||||| |||||||    
T  3097833 ttttgtgtaaataactcattttctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactc 3097749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 104 - 236
Target Start/End: Original strand, 9647183 - 9647315
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagtt 203  Q
    |||||| ||| ||||||| |||||||||||||||||  || |||||  |||||||||| |||||||||  |||| ||||||||||| |||  ||||||||    
T  9647183 ctctcatactcatattatctttttactttctctctctattgctttggtttttgtgtcactacttcatttcctttgtaaaattttggttgtcacaaaagtt 9647282  T
Q  204 gtcatataaatgaatgtttaaataatacaactc 236  Q
     ||  ||| ||||||||| |||||| |||||||    
T  9647283 atcgcatatatgaatgttcaaataacacaactc 9647315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 123 - 236
Target Start/End: Original strand, 2076639 - 2076752
Alignment:
Q  123 tttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgttt 222  Q
    |||||||||||||| ||  || |||||| |||||||||||||| ||||| ||||| ||||||||||| |||  |||||||||||| ||  ||  |||||     
T  2076639 tttttactttctctttctattgctttgatttttgtgtcaatacctcattttctttgtaaaattttggttgtcacaaaagttgtcacatctattgatgttc 2076738  T
Q  223 aaataatacaactc 236  Q
    |||||| |||||||    
T  2076739 aaataacacaactc 2076752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 123 - 236
Target Start/End: Original strand, 41195654 - 41195767
Alignment:
Q  123 tttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgttt 222  Q
    |||||||||||||||||  || |||||  |||||||||||||  |||||  |||| ||||||||||| |||  |||||||||| | ||| |||||||||     
T  41195654 tttttactttctctctctattgctttggtttttgtgtcaatatctcatttcctttgtaaaattttggttgtcacaaaagttgttacatatatgaatgttc 41195753  T
Q  223 aaataatacaactc 236  Q
    |||||| |||||||    
T  41195754 aaataacacaactc 41195767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 117 - 236
Target Start/End: Original strand, 32477396 - 32477515
Alignment:
Q  117 attatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatga 216  Q
    ||||| ||||||||||||||||   || |||||| |||||| | ||||| |||||  |||| | ||||||||| |||  |||||||||||| ||| ||||    
T  32477396 attatctttttactttctctctatattgctttgatttttgtatgaatacctcatttcctttgtcaaattttggttgtcacaaaagttgtcacatatatga 32477495  T
Q  217 atgtttaaataatacaactc 236  Q
    ||||| |||||| |||||||    
T  32477496 atgttcaaataacacaactc 32477515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 117 - 236
Target Start/End: Original strand, 43487443 - 43487562
Alignment:
Q  117 attatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatga 216  Q
    ||||| |||||||||||| ||||  || |||||  |||||||||| ||| |||||  |||| ||||||||||| |||| ||||| |||||| ||| |||     
T  43487443 attatttttttactttctttctctattgctttggtttttgtgtcactacctcatttcctttgtaaaattttggttgttacaaaaattgtcacatatatgg 43487542  T
Q  217 atgtttaaataatacaactc 236  Q
    ||||| |||||| |||||||    
T  43487543 atgttcaaataacacaactc 43487562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 104 - 236
Target Start/End: Complemental strand, 18254229 - 18254097
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagtt 203  Q
    |||||| ||| | ||||| |||||||||||||||||  || |||||  ||||||| || ||  |||||  |||| ||||||||||| |||  ||||||||    
T  18254229 ctctcatactcacattatctttttactttctctctctattgctttggtttttgtgccactatctcatttcctttgtaaaattttggttgtcacaaaagtt 18254130  T
Q  204 gtcatataaatgaatgtttaaataatacaactc 236  Q
    |||| ||| ||| ||||| |||||| |||||||    
T  18254129 gtcacatatatggatgttcaaataacacaactc 18254097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 104 - 228
Target Start/End: Original strand, 29349557 - 29349681
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagtt 203  Q
    |||||||| | | ||||| ||||||| || ||||||  ||||||||| ||||||| | |||| | ||| ||||| ||||||||||  |||  ||||||||    
T  29349557 ctctcacattcacattatgtttttaccttttctctctgttactttgatttttgtgccgatacattattttctttgtaaaattttgattgtcacaaaagtt 29349656  T
Q  204 gtcatataaatgaatgtttaaataa 228  Q
    ||||| |||||| ||||| ||||||    
T  29349657 gtcatctaaatggatgttgaaataa 29349681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 228
Target Start/End: Complemental strand, 16973774 - 16973657
Alignment:
Q  111 acttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatat 210  Q
    ||||| |||||||||||| |||||||  |  ||||||||| ||||| ||||||   ||||| | ||| ||||||||||| ||| |||| |||||||  ||    
T  16973774 acttagattatatttttattttctcttactattactttgatttttgggtcaatttctcattttatttgtaaaattttggttgtatcaatagttgtccaat 16973675  T
Q  211 aaatgaatgtttaaataa 228  Q
    ||||  ||||||||||||    
T  16973674 aaatagatgtttaaataa 16973657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 123 - 236
Target Start/End: Complemental strand, 42421899 - 42421786
Alignment:
Q  123 tttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgttt 222  Q
    ||||||||||||||||   || |||||   |||||| || ||| |||||  |||| ||||||||||| |||  |||||||||||| ||| |||||||||     
T  42421899 tttttactttctctctttattgctttggtgtttgtgccactacctcatttcctttctaaaattttggttgtcacaaaagttgtcacatatatgaatgttc 42421800  T
Q  223 aaataatacaactc 236  Q
    |||||| |||||||    
T  42421799 aaataacacaactc 42421786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 119 - 214
Target Start/End: Original strand, 43075951 - 43076044
Alignment:
Q  119 tatatttttactttctctctcgtttactttgaattttgtgtcaatacttc-attctctttataaaattttggatgtttcaaaagttgtcatataaat 214  Q
    ||||||||||||||||||||  | |  ||||| ||||||||||||||||| ||| | ||||||||||||||| ||| || |||||| ||||||||||    
T  43075951 tatatttttactttctctctactgt--tttgatttttgtgtcaatacttcaattttttttataaaattttggttgtctc-aaagttatcatataaat 43076044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 236
Target Start/End: Complemental strand, 17768016 - 17767932
Alignment:
Q  152 ttttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgtttaaataatacaactc 236  Q
    |||||||||||| ||||||| |||||| ||||  ||   ||| |||||||||||| || ||||||||||| |||||| |||||||    
T  17768016 ttttgtgtcaatgcttcattttctttacaaaaaattaattgtctcaaaagttgtcgtaaaaatgaatgttcaaataacacaactc 17767932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 228
Target Start/End: Original strand, 18846662 - 18846786
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagtt 203  Q
    |||||||||| |  |||| |||||||||||||||||  ||||||||| ||||||  |||||| ||||| | |||  |||||||||  |||   |||| ||    
T  18846662 ctctcacactcactttatgtttttactttctctctctattactttgatttttgtaccaatacatcattttttttgcaaaattttgattgtcataaaaatt 18846761  T
Q  204 gtcatataaatgaatgtttaaataa 228  Q
    ||||| |||||| ||||| ||||||    
T  18846762 gtcatctaaatggatgttcaaataa 18846786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 228
Target Start/End: Original strand, 41042305 - 41042429
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagtt 203  Q
    |||||| ||| | ||||| |||||||||||||||||  || |||||  |||| ||||||||  |||||  |||||||||||||||| |||   |||| ||    
T  41042305 ctctcatactcacattatctttttactttctctctctattgctttggtttttatgtcaatatctcatttcctttataaaattttggttgtcataaaaatt 41042404  T
Q  204 gtcatataaatgaatgtttaaataa 228  Q
    |||| ||| ||| ||||| ||||||    
T  41042405 gtcacatatatggatgttcaaataa 41042429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 240
Target Start/End: Original strand, 31414974 - 31415097
Alignment:
Q  117 attatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatga 216  Q
    ||||| ||||||||| |||||||  || | |||  |||||||||||||  ||  | ||||| ||||||| ||| ||| ||||||||| |||   ||||||    
T  31414974 attatgtttttacttactctctctgttgcattggtttttgtgtcaatatctctctttctttttaaaattatggttgtctcaaaagttatcaataaaatga 31415073  T
Q  217 atgtttaaataatacaactcataa 240  Q
     |||| ||||||||||||||||||    
T  31415074 ttgttcaaataatacaactcataa 31415097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 233
Target Start/End: Complemental strand, 6049343 - 6049236
Alignment:
Q  124 ttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgttta 223  Q
    ||||||||||||||||  || |||||  ||||||| |||||| |||||  |||| ||||||||||  |||  |||||||||||| ||| ||| ||||| |    
T  6049343 ttttactttctctctc--ttgctttggtttttgtgccaatacctcatttcctttgtaaaattttgattgtcacaaaagttgtcacatatatggatgttca 6049246  T
Q  224 aataatacaa 233  Q
    ||||| ||||    
T  6049245 aataacacaa 6049236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 236
Target Start/End: Complemental strand, 7664072 - 7663955
Alignment:
Q  118 ttatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaa 217  Q
    ||||||||||||||||||||||  || |||||  |||||||||||||| || || ||||| |||| || ||| |||   |||| ||||||  |||||||     
T  7664072 ttatatttttactttctctctctattgctttggtttttgtgtcaatacctctttttctttgtaaatttatggttgtcataaaa-ttgtcacctaaatgat 7663974  T
Q  218 tgtttaaataatacaactc 236  Q
    |||| |||||| |||||||    
T  7663973 tgttcaaataacacaactc 7663955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 158
Target Start/End: Original strand, 29449263 - 29449317
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtg 158  Q
    |||||| ||| | |||||||||||||||||||||||  ||||||||| |||||||    
T  29449263 ctctcatactcacattatatttttactttctctctctattactttgatttttgtg 29449317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 166
Target Start/End: Original strand, 31548360 - 31548422
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatact 166  Q
    |||||| | ||||||||| |||||||||||||||||  || ||||| ||||||| ||||||||    
T  31548360 ctctcatatttatattatgtttttactttctctctctattgctttggattttgtatcaatact 31548422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 214
Target Start/End: Complemental strand, 33273559 - 33273497
Alignment:
Q  152 ttttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaat 214  Q
    |||||||||||||  ||||| ||||||||||||||||| ||||| |||| || || |||||||    
T  33273559 ttttgtgtcaatatctcattttctttataaaattttggttgtttaaaaaattatcgtataaat 33273497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 138
Target Start/End: Complemental strand, 43658729 - 43658695
Alignment:
Q  104 ctctcacacttatattatatttttactttctctct 138  Q
    |||||| ||||||||||||||||||||||||||||    
T  43658729 ctctcatacttatattatatttttactttctctct 43658695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 165
Target Start/End: Original strand, 14328433 - 14328494
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatac 165  Q
    |||||| ||| | |||||||||||||||||||||||  || |||||| ||| ||||||||||    
T  14328433 ctctcatactcacattatatttttactttctctctctgttgctttgattttcgtgtcaatac 14328494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 117 - 171
Target Start/End: Original strand, 24766217 - 24766267
Alignment:
Q  117 attatatttttactttctctctcgtttactttgaattttgtgtcaatacttcatt 171  Q
    |||||||||||||||||||||||    ||||| | ||||||||||||||||||||    
T  24766217 attatatttttactttctctctc----actttaatttttgtgtcaatacttcatt 24766267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 107 - 240
Target Start/End: Original strand, 28494914 - 28495047
Alignment:
Q  107 tcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtc 206  Q
    ||||||| ||||||| |||||| |||||||||   ||| ||||  |||||||||||||| | ||| ||| | |||| || ||| |||  ||||||||||     
T  28494914 tcacactcatattatgtttttattttctctctaaattattttggtttttgtgtcaatacctaattttctgtgtaaatttatggttgtcacaaaagttgta 28495013  T
Q  207 atataaatgaatgtttaaataatacaactcataa 240  Q
    || ||||||  |||| |||||| |||||| ||||    
T  28495014 atttaaatggttgttcaaataacacaactaataa 28495047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 204
Target Start/End: Original strand, 8427604 - 8427704
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagtt 203  Q
    |||||| ||||| |||||| ||||||||||||||||  ||| ||||  ||| |||||||||  | |||  ||||||||| || ||| |||| ||||||||    
T  8427604 ctctcatacttacattatacttttactttctctctctattattttggttttcgtgtcaataactaatttcctttataaatttatggttgttccaaaagtt 8427703  T
Q  204 g 204  Q
    |    
T  8427704 g 8427704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 236
Target Start/End: Original strand, 9194292 - 9194424
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagtt 203  Q
    |||||| ||| | ||||| |||||||||||||||||  ||  ||||  ||||||| || ||| |||||   ||| ||||||||||| |||  ||||| ||    
T  9194292 ctctcatactcacattatctttttactttctctctctattgttttggtttttgtgccattacctcatttcttttgtaaaattttggttgtcacaaaaatt 9194391  T
Q  204 gtcatataaatgaatgtttaaataatacaactc 236  Q
    || | ||| ||||||||| |||||| |||||||    
T  9194392 gttacatatatgaatgttcaaataacacaactc 9194424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 236
Target Start/End: Original strand, 9760069 - 9760201
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagtt 203  Q
    |||||| ||| | ||||| |||||||||||||||||  || ||||  |||||||| || ||| |||||  |||   |||||||||| |||  ||||||||    
T  9760069 ctctcatactcacattatctttttactttctctctctattgctttagattttgtgccactacctcatttccttggaaaaattttggttgtcacaaaagtt 9760168  T
Q  204 gtcatataaatgaatgtttaaataatacaactc 236  Q
    |||| ||| ||  ||||| |||||| |||||||    
T  9760169 gtcacatatatagatgttcaaataacacaactc 9760201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 236
Target Start/End: Complemental strand, 22888789 - 22888705
Alignment:
Q  152 ttttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgtttaaataatacaactc 236  Q
    ||||||| |||||| |||||  |||| ||||||||||  |||  |||||||||||| ||| ||| ||||| |||||| |||||||    
T  22888789 ttttgtgccaatacctcatttcctttgtaaaattttgattgtcacaaaagttgtcacatatatggatgttcaaataacacaactc 22888705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 235
Target Start/End: Complemental strand, 34945091 - 34944979
Alignment:
Q  123 tttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgttt 222  Q
    |||||||||||||||||  || |||||| ||||||| || ||| |||||   ||| ||||||||||| |||  | |||||||||| ||| |||||| ||     
T  34945091 tttttactttctctctctattgctttgatttttgtgccactacctcatttcttttgtaaaattttggttgtcacgaaagttgtcacatatatgaatattc 34944992  T
Q  223 aaataatacaact 235  Q
    || ||| ||||||    
T  34944991 aattaacacaact 34944979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 236
Target Start/End: Complemental strand, 37737963 - 37737859
Alignment:
Q  132 tctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgtttaaataatac 231  Q
    ||||||||  || |||||| |||||||||||||  |||||  |||| |||| |||||| |||  |||||||||||| ||| ||| | ||| |||||| ||    
T  37737963 tctctctctattgctttgatttttgtgtcaatatctcatttcctttgtaaagttttggttgtcacaaaagttgtcacatatatggacgttcaaataacac 37737864  T
Q  232 aactc 236  Q
    |||||    
T  37737863 aactc 37737859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 164
Target Start/End: Original strand, 40700247 - 40700307
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaata 164  Q
    |||||| ||| | |||||||||||||||| ||||||  ||||||||| ||| |||||||||    
T  40700247 ctctcatactcacattatatttttactttatctctctattactttgattttcgtgtcaata 40700307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 236
Target Start/End: Complemental strand, 44977519 - 44977387
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagtt 203  Q
    |||||| | ||| ||||| |||||||||||||||||  || |||||  ||||||||||||||  |||| ||||| |||| || ||| ||| ||| |||||    
T  44977519 ctctcatatttacattatgtttttactttctctctctattgctttggtttttgtgtcaataccccattttctttgtaaatttatggttgtctcataagtt 44977420  T
Q  204 gtcatataaatgaatgtttaaataatacaactc 236  Q
     || |  |||||  |||| |||||| |||||||    
T  44977419 ttcgttcaaatggttgttcaaataacacaactc 44977387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 41)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 104 - 236
Target Start/End: Original strand, 33100859 - 33100991
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagtt 203  Q
    |||||| ||| | ||||| |||||||||||||||||  ||  ||||| |||||||||| ||| |||||  |||||||||||||||| |||  ||||||||    
T  33100859 ctctcatactcacattatctttttactttctctctctattgttttgatttttgtgtcactacctcatttcctttataaaattttggttgtcacaaaagtt 33100958  T
Q  204 gtcatataaatgaatgtttaaataatacaactc 236  Q
    |||| ||| ||||||||| |||||| |||||||    
T  33100959 gtcacatatatgaatgttcaaataacacaactc 33100991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 111 - 239
Target Start/End: Complemental strand, 19947755 - 19947629
Alignment:
Q  111 acttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatat 210  Q
    ||||| |||||  |||||||||||||||   || |||||  ||||||  |||||| || || ||||||||||||||||| ||| ||||||||||||||||    
T  19947755 acttacattatgcttttactttctctcta--ttgctttggtttttgtcccaatacctccttttctttataaaattttggttgtctcaaaagttgtcatat 19947658  T
Q  211 aaatgaatgtttaaataatacaactcata 239  Q
    |||| |||||| |||||| ||||||||||    
T  19947657 aaataaatgttcaaataacacaactcata 19947629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 111 - 240
Target Start/End: Complemental strand, 44519164 - 44519035
Alignment:
Q  111 acttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatat 210  Q
    ||||| ||||| |||||||||||||||||  || |||||| |||||||  ||||| |||||  |||| ||||||||||| | |  |||||||||||| ||    
T  44519164 acttacattatctttttactttctctctctattgctttgatttttgtgctaatacctcatttcctttgtaaaattttggttatcacaaaagttgtcacat 44519065  T
Q  211 aaatgaatgtttaaataatacaactcataa 240  Q
    | ||||||||| |||||| |||||||||||    
T  44519064 atatgaatgttcaaataacacaactcataa 44519035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 104 - 236
Target Start/End: Complemental strand, 9566980 - 9566848
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagtt 203  Q
    |||||| ||| | ||||| ||||||||||||| |||  || |||||  ||||||||||||||   ||| ||| | ||||||||||| ||| |||||||||    
T  9566980 ctctcatactcacattatgtttttactttctcactctattgctttggtttttgtgtcaataccctattttctatgtaaaattttggttgtctcaaaagtt 9566881  T
Q  204 gtcatataaatgaatgtttaaataatacaactc 236  Q
    ||||||||| |||||||| |||||| |||||||    
T  9566880 gtcatataattgaatgttcaaataacacaactc 9566848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 21401497 - 21401581
Alignment:
Q  152 ttttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgtttaaataatacaactc 236  Q
    |||||||||||||| ||||| ||||| ||||||||||  ||||||||||||||||| ||||||| ||||| |||||| |||||||    
T  21401497 ttttgtgtcaatacctcattttctttgtaaaattttgattgtttcaaaagttgtcacataaatggatgttcaaataacacaactc 21401581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 46907294 - 46907378
Alignment:
Q  152 ttttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgtttaaataatacaactc 236  Q
    |||||||||||||| ||||| ||||||||||||||||  ||| |||||||||||| |||||||| ||||| |||||| |||||||    
T  46907294 ttttgtgtcaatacctcattttctttataaaattttgattgtctcaaaagttgtcgtataaatggatgttcaaataacacaactc 46907378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 117 - 236
Target Start/End: Complemental strand, 2269579 - 2269460
Alignment:
Q  117 attatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatga 216  Q
    ||||| ||||||||||||| || | || |||||  |||||||||||||| | ||| |||  |||||||||||| ||| |||||||||||||||||| |||    
T  2269579 attatgtttttactttctcacttgattgctttggtttttgtgtcaataccttattttctaaataaaattttggttgtatcaaaagttgtcatataattga 2269480  T
Q  217 atgtttaaataatacaactc 236  Q
    || || |||||| |||||||    
T  2269479 atattcaaataacacaactc 2269460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 123 - 238
Target Start/End: Original strand, 35369770 - 35369885
Alignment:
Q  123 tttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgttt 222  Q
    |||||||||||||||||  || |||||| |||||||||| ||| |||||  |||||||||||||||| |||  |||||||||||| ||| ||| |||||     
T  35369770 tttttactttctctctctattgctttgatttttgtgtcactacctcatttcctttataaaattttggttgtcacaaaagttgtcacatatatggatgttc 35369869  T
Q  223 aaataatacaactcat 238  Q
    |||||| ||| |||||    
T  35369870 aaataacacacctcat 35369885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 118 - 236
Target Start/End: Original strand, 50149011 - 50149129
Alignment:
Q  118 ttatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaa 217  Q
    ||||||||||||||||| ||||  || |||||  ||||||||||||   ||||| ||||| ||||||||||  |||| ||||||||||||||||||   |    
T  50149011 ttatatttttactttctttctctattgctttggtttttgtgtcaatcaatcattttctttgtaaaattttgattgttgcaaaagttgtcatataaaatga 50149110  T
Q  218 tgtttaaataatacaactc 236  Q
    |||| |||||| |||||||    
T  50149111 tgttcaaataacacaactc 50149129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 111 - 236
Target Start/End: Original strand, 25672400 - 25672525
Alignment:
Q  111 acttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatat 210  Q
    ||||||||||| |||||| ||||||| ||  |||||||   |||||||||||||||| ||| ||||| ||||||||||  | | ||||||||| ||||||    
T  25672400 acttatattatgtttttattttctctttctattactttagtttttgtgtcaatactttattttctttgtaaaattttgattatatcaaaagttatcatat 25672499  T
Q  211 aaatgaatgtttaaataatacaactc 236  Q
    ||||   |||| | ||||||||||||    
T  25672500 aaatagttgttcagataatacaactc 25672525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 104 - 236
Target Start/End: Original strand, 649820 - 649952
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagtt 203  Q
    |||||| ||| | ||||| |||||||||||||||||  || |||||  |||||||||| ||| |||||  |||| ||||||||||| |||  ||||||||    
T  649820 ctctcatactcacattatctttttactttctctctctattgctttggtttttgtgtcactacctcatttcctttgtaaaattttggttgtcacaaaagtt 649919  T
Q  204 gtcatataaatgaatgtttaaataatacaactc 236  Q
    |||| |||  || ||||| |||||| |||||||    
T  649920 gtcacatatgtggatgttcaaataacacaactc 649952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 104 - 236
Target Start/End: Original strand, 31088232 - 31088364
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagtt 203  Q
    |||||| ||| | ||||| |||||||||||||||||  || |||||  ||||||| || ||| ||||| | ||| ||||||||||| |||  ||||||||    
T  31088232 ctctcatactcacattatctttttactttctctctctattgctttggtttttgtgccactacctcattttttttgtaaaattttggttgtcacaaaagtt 31088331  T
Q  204 gtcatataaatgaatgtttaaataatacaactc 236  Q
    |||| ||| ||| ||||| |||||| |||||||    
T  31088332 gtcacatatatggatgttcaaataacacaactc 31088364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 124 - 228
Target Start/End: Complemental strand, 49647150 - 49647047
Alignment:
Q  124 ttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgttta 223  Q
    ||||||||||||||||  ||  ||||  |||||||||||||  || || | || |||||||||| | ||||||||||||||||||||||||||||||| |    
T  49647150 ttttactttctctctctattgttttggtttttgtgtcaataactcgtttt-ttcataaaattttagttgtttcaaaagttgtcatataaatgaatgttca 49647052  T
Q  224 aataa 228  Q
    |||||    
T  49647051 aataa 49647047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 117 - 240
Target Start/End: Original strand, 26469423 - 26469546
Alignment:
Q  117 attatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatga 216  Q
    ||||| |||||| ||||||||||  || ||| |  |||||||||| ||| |||||  |||| ||||||||||| |||  |||||||||||| ||| |||     
T  26469423 attatctttttattttctctctctattgcttcggtttttgtgtcactacctcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatgg 26469522  T
Q  217 atgtttaaataatacaactcataa 240  Q
    ||||| |||||| |||||||||||    
T  26469523 atgttcaaataacacaactcataa 26469546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 117 - 235
Target Start/End: Original strand, 9988016 - 9988134
Alignment:
Q  117 attatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatga 216  Q
    |||||||||||||||||||||||  || |||||| ||||||| ||||   ||||| | ||| ||||||||||| |||| |||| ||||| |||||||       
T  9988016 attatatttttactttctctctctattgctttgatttttgtgccaatcactcattttatttgtaaaattttggttgttgcaaaggttgtaatataaaatg 9988115  T
Q  217 atgtttaaataatacaact 235  Q
    ||||| |||||| ||||||    
T  9988116 atgttcaaataacacaact 9988134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 117 - 235
Target Start/End: Complemental strand, 49065371 - 49065253
Alignment:
Q  117 attatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatga 216  Q
    ||||| |||||||||||||||||  || |||||  ||||||| |||||||||||| ||||| ||||||||||| | | |  ||| |||||||||||||      
T  49065371 attatgtttttactttctctctctattgctttggtttttgtgccaatacttcattttctttgtaaaattttggttatctttaaaattgtcatataaatag 49065272  T
Q  217 atgtttaaataatacaact 235  Q
    || || |||||| ||||||    
T  49065271 atattcaaataacacaact 49065253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 104 - 238
Target Start/End: Complemental strand, 50726268 - 50726134
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagtt 203  Q
    |||||||| ||| ||||| |||||||||||||||||  ||  ||||| ||||||| || ||| ||||| |||||  |||||||||| |||  ||||| ||    
T  50726268 ctctcacatttacattatctttttactttctctctctattgttttgatttttgtgccactacctcattttctttgcaaaattttggttgtcacaaaaatt 50726169  T
Q  204 gtcatataaatgaatgtttaaataatacaactcat 238  Q
     ||| ||| ||| ||||| |||||| |||||||||    
T  50726168 atcacatatatggatgttcaaataacacaactcat 50726134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 104 - 236
Target Start/End: Complemental strand, 15083070 - 15082939
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagtt 203  Q
    |||||| |||||  |||| |||||||||||||||||  || |||||  ||||||||||||||||||||  |||| ||||| ||| |||  | ||||||||    
T  15083070 ctctcatacttactttatctttttactttctctctctattgctttggtttttgtgtcaatacttcatttcctttgtaaaagttt-gattgtacaaaagtt 15082972  T
Q  204 gtcatataaatgaatgtttaaataatacaactc 236  Q
     | | ||| |||||||||  |||||||||||||    
T  15082971 ttgacatatatgaatgttcgaataatacaactc 15082939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 104 - 236
Target Start/End: Original strand, 18434846 - 18434978
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagtt 203  Q
    |||||||| | | ||||| ||||||||||||||||   ||  ||||| ||||||| |||||| ||||| |||||  |||||||||| |||  ||||||||    
T  18434846 ctctcacattcacattatgtttttactttctctctttattgttttgatttttgtgccaatacatcattttctttgcaaaattttggttgtcacaaaagtt 18434945  T
Q  204 gtcatataaatgaatgtttaaataatacaactc 236  Q
    ||||| |||||  || || |||||| |||||||    
T  18434946 gtcatctaaatagattttcaaataacacaactc 18434978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 31827050 - 31827134
Alignment:
Q  152 ttttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgtttaaataatacaactc 236  Q
    |||||||||||||  ||||| | ||| ||||||||||| ||| |||||||||||||| |||||  ||||| |||||| |||||||    
T  31827050 ttttgtgtcaataactcattttttttgtaaaattttggttgtatcaaaagttgtcatctaaatagatgttcaaataacacaactc 31827134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 104 - 244
Target Start/End: Original strand, 37619595 - 37619735
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagtt 203  Q
    |||||| ||| | ||||| |||||| ||||||||||  || | |||| ||||||| |||||| |||||  |||| ||||||||||| |||   |||||||    
T  37619595 ctctcatactcacattatctttttaatttctctctctattgcgttgatttttgtgccaatacctcatttcctttgtaaaattttggttgtaataaaagtt 37619694  T
Q  204 gtcatataaatgaatgtttaaataatacaactcataataaa 244  Q
    |||| ||| ||| ||||| |||||| | |||||| ||||||    
T  37619695 gtcacatatatggatgttcaaataacataactcaaaataaa 37619735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 228
Target Start/End: Original strand, 50932396 - 50932479
Alignment:
Q  145 ctttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgtttaaataa 228  Q
    |||||| |||||||||||||| |||||  |||| ||||||||||| |||  |||||||||||| ||| ||| ||||| ||||||    
T  50932396 ctttgatttttgtgtcaatacctcatttcctttgtaaaattttggttgtaacaaaagttgtcacatatatggatgttcaaataa 50932479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 235
Target Start/End: Original strand, 30570644 - 30570706
Alignment:
Q  173 tctttataaaattttggatgtttcaaaagttgtcatataaatgaatgtttaaataatacaact 235  Q
    ||||| ||||||||||  |||||||||| || ||||||||||||||||| |||||| ||||||    
T  30570644 tctttgtaaaattttgattgtttcaaaaattatcatataaatgaatgttcaaataacacaact 30570706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 228
Target Start/End: Original strand, 6809694 - 6809755
Alignment:
Q  167 tcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgtttaaataa 228  Q
    ||||| ||| ||||||||||||| |||  |||||||||||||||||||| ||||| ||||||    
T  6809694 tcattttctatataaaattttggttgtcccaaaagttgtcatataaatggatgttcaaataa 6809755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 123 - 236
Target Start/End: Complemental strand, 18512344 - 18512231
Alignment:
Q  123 tttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgttt 222  Q
    |||||||||| ||||||  || ||||   |||| ||||||||| ||||| ||||||||||||||| | ||| | |||| || ||||||||||  |||||     
T  18512344 tttttactttatctctctattgctttagtttttatgtcaatacctcattttctttataaaattttagttgtcttaaaaattatcatataaattgatgttg 18512245  T
Q  223 aaataatacaactc 236  Q
    |||||| |||||||    
T  18512244 aaataacacaactc 18512231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 123 - 236
Target Start/End: Complemental strand, 27465058 - 27464945
Alignment:
Q  123 tttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgttt 222  Q
    |||||||||| ||||||  || |||||  ||||||| || ||| |||||  |||| ||||||||||| |||  |||||||||||| ||| ||| |||||     
T  27465058 tttttactttgtctctctattgctttggtttttgtgccactacctcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttc 27464959  T
Q  223 aaataatacaactc 236  Q
    |||||| |||||||    
T  27464958 aaataacacaactc 27464945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 165
Target Start/End: Complemental strand, 49446817 - 49446756
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatac 165  Q
    |||||| ||||| |||||||||||||||||||||||  |||||||||  |||||| ||||||    
T  49446817 ctctcatacttacattatatttttactttctctctctattactttgatatttgtgccaatac 49446756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 185
Target Start/End: Complemental strand, 26208252 - 26208172
Alignment:
Q  105 tctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaatt 185  Q
    ||||| ||||||||||| |||||| ||||  ||||  ||  ||||| ||||||||||||||||| || |||||||||||||    
T  26208252 tctcatacttatattatgtttttattttccttctctattgttttgatttttgtgtcaatacttctttttctttataaaatt 26208172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 228
Target Start/End: Complemental strand, 10627817 - 10627706
Alignment:
Q  117 attatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatga 216  Q
    |||||||||| ||||| ||||||  ||  ||||| |||||| |||||||  |||| ||||||||||||||||  ||| |||||| |||||| ||| ||      
T  10627817 attatattttcactttatctctctattgttttgatttttgtatcaataccacattttctttataaaattttgtttgtctcaaaaattgtcacatagatat 10627718  T
Q  217 atgtttaaataa 228  Q
    ||||| ||||||    
T  10627717 atgttgaaataa 10627706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 228
Target Start/End: Complemental strand, 26021046 - 26020972
Alignment:
Q  154 ttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgtttaaataa 228  Q
    |||||||||||  || || | ||| ||||||||||  ||| ||||||| ||||||||||||||||||| ||||||    
T  26021046 ttgtgtcaatatctctttttttttgtaaaattttgattgtctcaaaagatgtcatataaatgaatgttcaaataa 26020972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 189
Target Start/End: Complemental strand, 27533493 - 27533419
Alignment:
Q  115 atattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttgg 189  Q
    ||||||| ||||||||||||||||   ||  ||||| |||| ||||||||| ||||| ||||| |||||||||||    
T  27533493 atattatgtttttactttctctctttattgttttgatttttatgtcaatacctcattttctttgtaaaattttgg 27533419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 228
Target Start/End: Original strand, 32915388 - 32915438
Alignment:
Q  178 ataaaattttggatgtttcaaaagttgtcatataaatgaatgtttaaataa 228  Q
    |||||||||||| ||||||||||||| | ||||||||| ||||| ||||||    
T  32915388 ataaaattttggttgtttcaaaagttattatataaatggatgttcaaataa 32915438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 214
Target Start/End: Complemental strand, 48103327 - 48103273
Alignment:
Q  160 caatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaat 214  Q
    |||||| | ||| ||||| ||||||||||| ||| ||||||||||||||||||||    
T  48103327 caataccttattttctttgtaaaattttggttgtctcaaaagttgtcatataaat 48103273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 2571734 - 2571819
Alignment:
Q  152 ttttgtgtcaatacttcattctctttat-aaaattttggatgtttcaaaagttgtcatataaatgaatgtttaaataatacaactc 236  Q
    |||||||||| ||| ||||| ||||| | |||||||||| |||  |||||||||||||||  ||| ||||| |||||| |||||||    
T  2571734 ttttgtgtcactacctcattttctttgttaaaattttggttgtcacaaaagttgtcatatgcatggatgttcaaataacacaactc 2571819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 123 - 236
Target Start/End: Complemental strand, 19055760 - 19055647
Alignment:
Q  123 tttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgttt 222  Q
    |||||||||||||||||  ||  ||||  ||||||| |||||  |||||  |||| ||||||||| | |||  |||||||||||| ||| ||| |||||     
T  19055760 tttttactttctctctctattgttttggtttttgtgacaatatctcatttcctttgtaaaattttagttgtcacaaaagttgtcacatatatggatgttc 19055661  T
Q  223 aaataatacaactc 236  Q
    |||||| |||||||    
T  19055660 aaataacacaactc 19055647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 152 - 189
Target Start/End: Complemental strand, 24981539 - 24981502
Alignment:
Q  152 ttttgtgtcaatacttcattctctttataaaattttgg 189  Q
    |||||||||||||| ||||| |||||||||||||||||    
T  24981539 ttttgtgtcaatacctcattttctttataaaattttgg 24981502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 186
Target Start/End: Original strand, 4776821 - 4776889
Alignment:
Q  118 ttatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattt 186  Q
    |||| |||||||||| ||||||  ||||||||| ||||||| || ||| |||||  |||||||||||||    
T  4776821 ttatctttttactttatctctctattactttgatttttgtgccactacctcatttcctttataaaattt 4776889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 207
Target Start/End: Complemental strand, 8828122 - 8828038
Alignment:
Q  123 tttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtca 207  Q
    |||||||||||||||||  || |||||  ||||||| |||||| |||||   ||||||||||||||| |||  ||||| ||||||    
T  8828122 tttttactttctctctctattgctttggtttttgtgccaatacctcatttcttttataaaattttggttgtcgcaaaaattgtca 8828038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 228
Target Start/End: Original strand, 23645462 - 23645586
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagtt 203  Q
    |||||| ||| | ||||| |||||||||||||||||  ||  ||||  ||||||| || ||| |||||  |||| ||||||||||| |||  ||||||||    
T  23645462 ctctcatactcacattatctttttactttctctctctattgttttggtttttgtgccactacctcatttcctttgtaaaattttggttgtcacaaaagtt 23645561  T
Q  204 gtcatataaatgaatgtttaaataa 228  Q
    || | ||| ||| ||||| ||||||    
T  23645562 gttacatatatgtatgttcaaataa 23645586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 185
Target Start/End: Original strand, 33076184 - 33076252
Alignment:
Q  117 attatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaatt 185  Q
    |||||||||||| ||||||||||  |||||||||  |||||| |||||| | ||| ||||| |||||||    
T  33076184 attatatttttattttctctctctattactttgatatttgtgccaatacataattttctttgtaaaatt 33076252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 236
Target Start/End: Complemental strand, 52576309 - 52576189
Alignment:
Q  117 attatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatga 216  Q
    ||||| |||||||||||||||||  || |||||  ||||||| |  ||| |||||  |||| ||||||||||| |||  ||||||||||||  || ||||    
T  52576309 attatttttttactttctctctctattgctttggtttttgtgccggtacctcatttcctttgtaaaattttggttgtcacaaaagttgtcacctatatga 52576210  T
Q  217 a-tgtttaaataatacaactc 236  Q
    | |||| |||||| |||||||    
T  52576209 attgttcaaataacacaactc 52576189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 123 - 236
Target Start/End: Original strand, 11852 - 11965
Alignment:
Q  123 tttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatgaatgttt 222  Q
    |||||| ||||||||||  || |||||  |||||||||||||| ||||| ||||| |||||||||||  ||  |||||||||||||||  ||  |||||     
T  11852 tttttattttctctctctattgctttggtttttgtgtcaatacctcattttctttgtaaaattttggtcgtcacaaaagttgtcatatttatagatgttc 11951  T
Q  223 aaataatacaactc 236  Q
    ||||||||||||||    
T  11952 aaataatacaactc 11965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 117 - 238
Target Start/End: Complemental strand, 53368 - 53247
Alignment:
Q  117 attatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatga 216  Q
    ||||| |||||| |||||||||| |||  |||   |||||||||||||  ||||| |||||||||| |||||| ||| | |||| || |||||||||| |    
T  53368 attatgtttttattttctctctcttttgttttagtttttgtgtcaatatctcattttctttataaatttttggttgtctaaaaacttatcatataaataa 53269  T
Q  217 atgtttaaataatacaactcat 238  Q
    ||||| |||||| |||||||||    
T  53268 atgttcaaataacacaactcat 53247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 236
Target Start/End: Original strand, 8730 - 8851
Alignment:
Q  115 atattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaat 214  Q
    ||||||| ||||||| |||||||||  || |||||  |||||||||| ||| |||||  |||| ||||||||||| |||   ||||||||||| ||| ||    
T  8730 atattatctttttacgttctctctctgttgctttggtttttgtgtcactacctcatttcctttgtaaaattttggttgtcataaaagttgtcagatatat 8829  T
Q  215 gaatgtttaaataatacaactc 236  Q
    | ||||| |||||| |||||||    
T  8830 ggatgttcaaataacacaactc 8851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 239
Target Start/End: Original strand, 49346 - 49481
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagtt 203  Q
    |||||| ||| | ||||| ||||||||||||| |||  ||| ||||  |||||||||| ||| |||||  |||| ||||||||||| | |  ||||||||    
T  49346 ctctcatactcacattatctttttactttctcactctattattttggtttttgtgtcactacctcatttcctttgtaaaattttggttatcacaaaagtt 49445  T
Q  204 gtcatataaatgaatgtttaaataatacaactcata 239  Q
    |||| ||| ||| ||||| |||||| | ||||||||    
T  49446 gtcacatatatggatgttcaaataacataactcata 49481  T

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Target: scaffold0056 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 236
Target Start/End: Complemental strand, 76626 - 76507
Alignment:
Q  117 attatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttggatgtttcaaaagttgtcatataaatga 216  Q
    ||||| |||| ||||||||||||  || |||||  ||||||| || ||| |||||  |||| ||||||||||| |||  |||||||||||| ||| |||     
T  76626 attatcttttcactttctctctctattgctttggtttttgtgccactacctcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatgg 76527  T
Q  217 atgtttaaataatacaactc 236  Q
    ||||| |||||| |||||||    
T  76526 atgttaaaataacacaactc 76507  T

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Target: scaffold0041 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 188
Target Start/End: Complemental strand, 10970 - 10899
Alignment:
Q  117 attatatttttactttctctctcgtttactttgaattttgtgtcaatacttcattctctttataaaattttg 188  Q
    ||||| |||||||||||||||||  ||| ||||| |||||||| | ||| ||||| ||||||||||||||||    
T  10970 attatctttttactttctctctctattattttgatttttgtgttactacctcattttctttataaaattttg 10899  T

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Target: scaffold0002 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 104 - 171
Target Start/End: Complemental strand, 469657 - 469590
Alignment:
Q  104 ctctcacacttatattatatttttactttctctctcgtttactttgaattttgtgtcaatacttcatt 171  Q
    |||||||||| | ||||| || ||||||||||||||  ||||||||| |||||| ||||||| |||||    
T  469657 ctctcacactcacattatgttattactttctctctccattactttgatttttgtatcaatacctcatt 469590  T

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Target: scaffold0053 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 165
Target Start/End: Original strand, 12560 - 12610
Alignment:
Q  115 atattatatttttactttctctctcgtttactttgaattttgtgtcaatac 165  Q
    |||||||||||||||||||||||||  |||||||||  |||||| ||||||    
T  12560 atattatatttttactttctctctctattactttgatatttgtgccaatac 12610  T

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Target: scaffold0013 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 105 - 158
Target Start/End: Complemental strand, 94900 - 94847
Alignment:
Q  105 tctcacacttatattatatttttactttctctctcgtttactttgaattttgtg 158  Q
    ||||| ||||| |||||| ||||||||||||||||  ||||||||| |||||||    
T  94900 tctcaaacttacattataattttactttctctctctattactttgatttttgtg 94847  T

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Target: scaffold0007 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 105 - 138
Target Start/End: Original strand, 246713 - 246746
Alignment:
Q  105 tctcacacttatattatatttttactttctctct 138  Q
    ||||| ||||||||||||||||||||||||||||    
T  246713 tctcatacttatattatatttttactttctctct 246746  T

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Target: scaffold0687 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0687
Description:

Target: scaffold0687; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 163
Target Start/End: Original strand, 7122 - 7170
Alignment:
Q  115 atattatatttttactttctctctcgtttactttgaattttgtgtcaat 163  Q
    |||||||||||||||||||||||||  |||||||||  ||| |||||||    
T  7122 atattatatttttactttctctctctattactttgatatttatgtcaat 7170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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