View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10760_high_4 (Length: 266)
Name: NF10760_high_4
Description: NF10760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10760_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 29 - 253
Target Start/End: Complemental strand, 19396904 - 19396679
Alignment:
| Q |
29 |
gtacataactcctcaaatttgttggtcgagggaatcttgtgctattatgttgcagattggtgttttagtccttgtggtgcggatctgtctggtgtgcttg |
128 |
Q |
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| T |
19396904 |
gtacataactactcaaatttgttggtcgagggaatcttgtgctattatgttgcagattggtgttttagtccttgtggtgcggatctgtctggtgtgcttg |
19396805 |
T |
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| Q |
129 |
atgtttgtcaatttaa-tttaattggctgaagtgtttaggcatgttggcggatcacgttttaggaactctattggttgtatctcagaatccgtgtcagtt |
227 |
Q |
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| T |
19396804 |
atgtttgtcaatttaattttaattggctgaagtgtttaggcatgttggcggatcacgttttaggaactctattggttgtatctcagaatccgtgtctgtt |
19396705 |
T |
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| Q |
228 |
tggctccagattagtagttaatgtct |
253 |
Q |
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| T |
19396704 |
tggctcaagattagtagttaatgtct |
19396679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 40 - 168
Target Start/End: Original strand, 7767552 - 7767682
Alignment:
| Q |
40 |
ctcaaatttgttggtcgagggaatcttgtgctattatgttgcagattggtgttttagtccttgtggtgcggatctgtctggtgtgcttgatgtttgtcaa |
139 |
Q |
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| T |
7767552 |
ctcaaatttgttggtcgaagaaatcttctgctattatgttgcagattggtgttttagtccttgtggtgcggatctgtttggggttcttgatgtttgccaa |
7767651 |
T |
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| Q |
140 |
ttt--aatttaattggctgaagtgtttaggc |
168 |
Q |
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| T |
7767652 |
ttttaattttaattggttgaagtgtttaggc |
7767682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 23 - 212
Target Start/End: Complemental strand, 35481736 - 35481549
Alignment:
| Q |
23 |
ttaatggtacataactcctcaaatttgttggtcgagggaatcttgtgctattatgttgcagattggtgttttagtccttgtggtgcggatctgtctggtg |
122 |
Q |
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| T |
35481736 |
ttaatggtacataaatcctcaaatttttccct--agggattcttgtattattatgttgcagattggtgtttaattctttgtggtgtggatatgtttaggg |
35481639 |
T |
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| Q |
123 |
tgcttgatgtttgtcaatttaatttaattggctgaagtgtttaggcatgttggcggatcacgttttaggaactctattggttgtatctca |
212 |
Q |
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| T |
35481638 |
ttattgatgtttgtcaatttattttatttggttgaagtgtttaggtgtattagtggatcgtgtttcaggagctctcttggttgtatctca |
35481549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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