View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10760_low_10 (Length: 272)
Name: NF10760_low_10
Description: NF10760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10760_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 28861585 - 28861319
Alignment:
| Q |
1 |
aacataaacaaagaatcaagttcaagctaataataatacataaagctattgaaattgatcaaaaatgaaagatgaggtgatacaaagcaaaaagtacctg |
100 |
Q |
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| T |
28861585 |
aacataaacaaagaatcaagttcaagctaataataatacataaagctattgaaattgatcaaaaatgaaagatgaggtgatacaaagcaaaatgtacatg |
28861486 |
T |
|
| Q |
101 |
ttcaaaactaaggagaagcttccaaccaagaggcaacacaagtttccaaagcatcaacaatcctcctgcttttccaaaccgatcaaccagaaccagatca |
200 |
Q |
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|||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
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| T |
28861485 |
ttcaaa-ctaaggagaagcttccaaccaagaggcaacacaaatctccaaagcatcaacaatcctcctgcttttacaatccgatcaaccagaaccagatca |
28861387 |
T |
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| Q |
201 |
ttcaaaaagagggaagagagaaaatgtatgtgataaccactccaaaagaaccgttgattcttctcact |
268 |
Q |
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| T |
28861386 |
ttcaaaaagaggggagagagaaaaggtatgtgataaccactccaaatgaaccgttgattattttcact |
28861319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 33 - 187
Target Start/End: Complemental strand, 28859530 - 28859377
Alignment:
| Q |
33 |
ataatacataaagctattgaaattgatcaaaaatgaaagatgaggtgatacaaagcaaaaagtacctgttcaaaactaaggagaagcttccaaccaagag |
132 |
Q |
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| T |
28859530 |
ataatacataaagcttttgaa-ttggtcgaaaaagaaagatgaggtgatacaaagcaaaaagtacctgttcaaaatcaaggagaagcttccaaccaagag |
28859432 |
T |
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| Q |
133 |
gcaacacaagtttccaaagcatcaacaatcctcctgcttttccaaaccgatcaac |
187 |
Q |
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| T |
28859431 |
gcaacacaagtctccaaagcataaaaaattctcctgcttctccaaaccgatcaac |
28859377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 105 - 138
Target Start/End: Original strand, 2768165 - 2768198
Alignment:
| Q |
105 |
aaactaaggagaagcttccaaccaagaggcaaca |
138 |
Q |
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|||||||| ||||||||||||||||||||||||| |
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| T |
2768165 |
aaactaagaagaagcttccaaccaagaggcaaca |
2768198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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