View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10760_low_16 (Length: 255)
Name: NF10760_low_16
Description: NF10760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10760_low_16 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 5 - 255
Target Start/End: Original strand, 36808321 - 36808569
Alignment:
| Q |
5 |
ggagaagcagagaatggaacagaacccgttgaagatcttgtgacgtacttctctaagcatgacgattccgactttccttattacggcaaatgtggtaatt |
104 |
Q |
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| T |
36808321 |
ggagaaacagagaatggaacagaacccgttgaagatcttgtgacgtacttctctaagcatgacgattccgactttccatattacggcaaacgtggtaatt |
36808420 |
T |
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| Q |
105 |
ttgagtataagaatgaggcatataggaagcttgaggctcaaattcaaatatataaggagaagtctcacaacctaagtgtacgcatctatctaactgctag |
204 |
Q |
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| T |
36808421 |
ttgagtataagaatgaggcatataggaagc--aaggctcaaattcaaatatataaggagaagtctcacaacctaagtgtacgcatctatctaactgctag |
36808518 |
T |
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| Q |
205 |
gagtgaacaaaattgaattgcaannnnnnnnattgatggtgaatttagctt |
255 |
Q |
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| T |
36808519 |
gagtgaacaaaattgaattgcaattttttttattgatggtgaatttagctt |
36808569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 53 - 196
Target Start/End: Complemental strand, 36512438 - 36512295
Alignment:
| Q |
53 |
ttctctaagcatgacgattccgactttccttattacggcaaatgtggtaattttgagtataagaatgaggcatataggaagcttgaggctcaaattcaaa |
152 |
Q |
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| T |
36512438 |
ttctctaagtatgacgattccgactttccttatcacgtcaaaagtggtaattttgagtataagaatgaggcatataggctgcttgaggctcaaattcaaa |
36512339 |
T |
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| Q |
153 |
tatataaggagaagtctcacaacctaagtgtacgcatctatcta |
196 |
Q |
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| T |
36512338 |
tctataaggagaagtctcgcaacctaagtgtacgcatctatcta |
36512295 |
T |
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