View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10760_low_20 (Length: 242)

Name: NF10760_low_20
Description: NF10760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10760_low_20
NF10760_low_20
[»] chr7 (2 HSPs)
chr7 (154-242)||(25872968-25873056)
chr7 (19-63)||(25872766-25872810)
[»] scaffold0032 (1 HSPs)
scaffold0032 (19-63)||(56484-56528)
[»] chr8 (2 HSPs)
chr8 (19-63)||(70604-70648)
chr8 (19-59)||(4531067-4531107)
[»] chr5 (1 HSPs)
chr5 (19-63)||(35317778-35317822)
[»] chr4 (1 HSPs)
chr4 (19-63)||(53457827-53457871)
[»] chr3 (1 HSPs)
chr3 (19-63)||(42392886-42392930)
[»] chr2 (3 HSPs)
chr2 (19-63)||(11459718-11459762)
chr2 (19-63)||(34234533-34234577)
chr2 (19-63)||(42578183-42578227)


Alignment Details
Target: chr7 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 154 - 242
Target Start/End: Original strand, 25872968 - 25873056
Alignment:
Q  154 aagaagaaatatcaaaggacattaagaacagggatctgtattttcgatccgaactgatcttactttgcaaaaccgaactgtgaaccttt 242  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25872968 aagaagaaatatcaaaggacattaagaacagggatctgtattttcgatccgaactgatcttactttgcaaaaccgaactgtgaaccttt 25873056  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 25872766 - 25872810
Alignment:
Q  19 tagaaatcctagctaaattggcaaatgccgatattgcaaggtcgg 63  Q
    ||||| ||||| || |||||||||||||||||||| |||||||||    
T  25872766 tagaagtcctaactcaattggcaaatgccgatattacaaggtcgg 25872810  T

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Target: scaffold0032 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 56484 - 56528
Alignment:
Q  19 tagaaatcctagctaaattggcaaatgccgatattgcaaggtcgg 63  Q
    ||||| |||||||| || ||||||||||||| |||||||||||||    
T  56484 tagaagtcctagctcaactggcaaatgccgaaattgcaaggtcgg 56528  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 70648 - 70604
Alignment:
Q  19 tagaaatcctagctaaattggcaaatgccgatattgcaaggtcgg 63  Q
    ||||| |||||||| || ||||||||||||| |||||||||||||    
T  70648 tagaagtcctagctcaactggcaaatgccgaaattgcaaggtcgg 70604  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 4531107 - 4531067
Alignment:
Q  19 tagaaatcctagctaaattggcaaatgccgatattgcaagg 59  Q
    ||||| |||||||| |||||||||||||||| |||||||||    
T  4531107 tagaagtcctagctcaattggcaaatgccgaaattgcaagg 4531067  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 35317822 - 35317778
Alignment:
Q  19 tagaaatcctagctaaattggcaaatgccgatattgcaaggtcgg 63  Q
    ||||| |||||||| || ||||||||||||| |||||||||||||    
T  35317822 tagaagtcctagctcaactggcaaatgccgaaattgcaaggtcgg 35317778  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 53457827 - 53457871
Alignment:
Q  19 tagaaatcctagctaaattggcaaatgccgatattgcaaggtcgg 63  Q
    ||||| |||||||| || ||||||||||||| |||||||||||||    
T  53457827 tagaagtcctagctcaactggcaaatgccgaaattgcaaggtcgg 53457871  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 42392930 - 42392886
Alignment:
Q  19 tagaaatcctagctaaattggcaaatgccgatattgcaaggtcgg 63  Q
    ||||| |||||||| || ||||||||||||| |||||||||||||    
T  42392930 tagaagtcctagctcaactggcaaatgccgaaattgcaaggtcgg 42392886  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 11459718 - 11459762
Alignment:
Q  19 tagaaatcctagctaaattggcaaatgccgatattgcaaggtcgg 63  Q
    ||||| |||||||| || ||||||||||||| |||||||||||||    
T  11459718 tagaagtcctagctcaactggcaaatgccgaaattgcaaggtcgg 11459762  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 34234533 - 34234577
Alignment:
Q  19 tagaaatcctagctaaattggcaaatgccgatattgcaaggtcgg 63  Q
    ||||| |||||||| || ||||||||||||| |||||||||||||    
T  34234533 tagaagtcctagctcaactggcaaatgccgaaattgcaaggtcgg 34234577  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 42578183 - 42578227
Alignment:
Q  19 tagaaatcctagctaaattggcaaatgccgatattgcaaggtcgg 63  Q
    ||||| |||||||| || ||||||||||||| |||||||||||||    
T  42578183 tagaagtcctagctcaactggcaaatgccgaaattgcaaggtcgg 42578227  T

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