View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10760_low_22 (Length: 227)

Name: NF10760_low_22
Description: NF10760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10760_low_22
NF10760_low_22
[»] scaffold0294 (1 HSPs)
scaffold0294 (1-227)||(20394-20620)
[»] chr4 (7 HSPs)
chr4 (1-227)||(11677966-11678192)
chr4 (1-227)||(11686245-11686471)
chr4 (1-227)||(11785392-11785618)
chr4 (9-208)||(11699159-11699358)
chr4 (1-227)||(11708604-11708830)
chr4 (9-222)||(11788987-11789200)
chr4 (9-222)||(11801154-11801367)


Alignment Details
Target: scaffold0294 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 20394 - 20620
Alignment:
Q  1 aaggttggttccaatttgggctacaactttggtttatggtattatctttgctcaagtttttacattcttcaccaagcaagggagttctatgcagagaaca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20394 aaggttggttccaatttgggctacaactttggtttatggtattatctttgctcaagtttttacattcttcaccaagcaagggagttctatgcagagaaca 20493  T
Q  101 atatttcctggtttcgacatacctcccgcttctcttcaaacgataaccaatgtctccatagttctcttcagccctatctacgaccgtatatttgtgccac 200  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20494 atatttcctggtttcgacatacctccggcttctcttcaaacgataaccaatgtctccatagttctcttcagccctatctacgaccgtatatttgtgccac 20593  T
Q  201 tagcaagaagtatcactggaaaaccct 227  Q
    |||||||||||||||||||||||||||    
T  20594 tagcaagaagtatcactggaaaaccct 20620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 11677966 - 11678192
Alignment:
Q  1 aaggttggttccaatttgggctacaactttggtttatggtattatctttgctcaagtttttacattcttcaccaagcaagggagttctatgcagagaaca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  11677966 aaggttggttccaatttgggctacaactttggtttatggtattatctttgctcaagtttttacattctttaccaagcaagggagttctatgcagagaaca 11678065  T
Q  101 atatttcctggtttcgacatacctcccgcttctcttcaaacgataaccaatgtctccatagttctcttcagccctatctacgaccgtatatttgtgccac 200  Q
    ||||||||||| || ||||||||||||||||| |||||| |||| | |    |  | ||  ||||||||||||||||||| ||||| ||||| ||||| |    
T  11678066 atatttcctggatttgacatacctcccgcttcgcttcaatcgattaacgggcttgcaattcttctcttcagccctatctatgaccgcatattcgtgccgc 11678165  T
Q  201 tagcaagaagtatcactggaaaaccct 227  Q
    ||||||||  |||||| ||||||||||    
T  11678166 tagcaagagctatcaccggaaaaccct 11678192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 11686245 - 11686471
Alignment:
Q  1 aaggttggttccaatttgggctacaactttggtttatggtattatctttgctcaagtttttacattcttcaccaagcaagggagttctatgcagagaaca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  11686245 aaggttggttccaatttgggctacaactttggtttatggtattatctttgctcaagtttttacattctttaccaagcaagggagttctatgcagagaaca 11686344  T
Q  101 atatttcctggtttcgacatacctcccgcttctcttcaaacgataaccaatgtctccatagttctcttcagccctatctacgaccgtatatttgtgccac 200  Q
    ||||||||||| || ||||||||||||||||| |||||| |||| | |    |  | ||  ||||||||||||||||||| ||||| ||||| ||||| |    
T  11686345 atatttcctggatttgacatacctcccgcttcgcttcaatcgattaacgggcttgcaattcttctcttcagccctatctatgaccgcatattcgtgccgc 11686444  T
Q  201 tagcaagaagtatcactggaaaaccct 227  Q
    ||||||||  |||||| ||||||||||    
T  11686445 tagcaagagctatcaccggaaaaccct 11686471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 11785392 - 11785618
Alignment:
Q  1 aaggttggttccaatttgggctacaactttggtttatggtattatctttgctcaagtttttacattcttcaccaagcaagggagttctatgcagagaaca 100  Q
    ||||||| |||||||||||||| | ||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||    
T  11785392 aaggttgattccaatttgggcttcgactttagtttatggtattatctttgctcaaatatttacattcttcaccaagcaagggagttctatggagagaaca 11785491  T
Q  101 atatttcctggtttcgacatacctcccgcttctcttcaaacgataaccaatgtctccatagttctcttcagccctatctacgaccgtatatttgtgccac 200  Q
    ||||||||||||||| ||||||||||||||||||||  || ||||  |  |||  | || ||||||||||||||||||||||||||| |||| |||||||    
T  11785492 atatttcctggtttcaacatacctcccgcttctcttggaatgataggcggtgttgcaattgttctcttcagccctatctacgaccgtttattcgtgccac 11785591  T
Q  201 tagcaagaagtatcactggaaaaccct 227  Q
    ||||||| | ||| |||||||||||||    
T  11785592 tagcaaggaatataactggaaaaccct 11785618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 9 - 208
Target Start/End: Original strand, 11699159 - 11699358
Alignment:
Q  9 ttccaatttgggctacaactttggtttatggtattatctttgctcaagtttttacattcttcaccaagcaagggagttctatgcagagaacaatatttcc 108  Q
    ||||||||||||| |||||||| |||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||    
T  11699159 ttccaatttgggcgacaactttagtttatggcattgtctttgctcaagtttttactttcttcaccaagcaagggagttcaatggagagaacaatatttcc 11699258  T
Q  109 tggtttcgacatacctcccgcttctcttcaaacgataaccaatgtctccatagttctcttcagccctatctacgaccgtatatttgtgccactagcaaga 208  Q
    ||| |||||||||||||| ||||||||||||||||||| |  |||  | || ||| |||||||| | ||||||||||| |||||||||||||||||||||    
T  11699259 tggcttcgacatacctcctgcttctcttcaaacgataaacggtgttgcaattgttgtcttcagcgcaatctacgaccgcatatttgtgccactagcaaga 11699358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 11708604 - 11708830
Alignment:
Q  1 aaggttggttccaatttgggctacaactttggtttatggtattatctttgctcaagtttttacattcttcaccaagcaagggagttctatgcagagaaca 100  Q
    ||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||    
T  11708604 aaggttggttccaatttggacttcaactttggtttatggtattgtctttgctcaagtttttacattcttcaccaagcaagggacttcaatggagagaaca 11708703  T
Q  101 atatttcctggtttcgacatacctcccgcttctcttcaaacgataaccaatgtct--ccatagttctcttcagccctatctacgaccgtatatttgtgcc 198  Q
    ||||||||||| || |||||||||||| |||| |||||||| ||||  |||| ||  | || ||||||||| |||||||||| || |  ||||| |||||    
T  11708704 atatttcctggatttgacatacctccctcttcgcttcaaacaataa--aatggcttgcaattgttctcttctgccctatctatgagcacatattcgtgcc 11708801  T
Q  199 actagcaagaagtatcactggaaaaccct 227  Q
    ||||||||||  ||| |||||||| ||||    
T  11708802 actagcaagagttataactggaaagccct 11708830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 9 - 222
Target Start/End: Original strand, 11788987 - 11789200
Alignment:
Q  9 ttccaatttgggctacaactttggtttatggtattatctttgctcaagtttttacattcttcaccaagcaagggagttctatgcagagaacaatatttcc 108  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||| | ||||||||||||||||| |||||||||||| || ||||||||||||||||    
T  11788987 ttccaatttgggctacatctttagtttatggtattatctttgctcaaatatttacattcttcaccaaacaagggagttctttggagagaacaatatttcc 11789086  T
Q  109 tggtttcgacatacctcccgcttctcttcaaacgataaccaatgtctccatagttctcttcagccctatctacgaccgtatatttgtgccactagcaaga 208  Q
    ||||||| ||||||||||||||||||||  | | |||     |||  | || ||||||||||  ||||||||||||||| |||| |||||||||||||||    
T  11789087 tggtttcaacatacctcccgcttctcttggatcaataggtggtgttgctattgttctcttcactcctatctacgaccgtttattcgtgccactagcaaga 11789186  T
Q  209 agtatcactggaaa 222  Q
      ||| ||||||||    
T  11789187 gttataactggaaa 11789200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 9 - 222
Target Start/End: Original strand, 11801154 - 11801367
Alignment:
Q  9 ttccaatttgggctacaactttggtttatggtattatctttgctcaagtttttacattcttcaccaagcaagggagttctatgcagagaacaatatttcc 108  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||| | ||||||||||||||||| |||||||||||| || ||||||||||||||||    
T  11801154 ttccaatttgggctacatctttagtttatggtattatctttgctcaaatatttacattcttcaccaaacaagggagttctttggagagaacaatatttcc 11801253  T
Q  109 tggtttcgacatacctcccgcttctcttcaaacgataaccaatgtctccatagttctcttcagccctatctacgaccgtatatttgtgccactagcaaga 208  Q
    ||||||| ||||||||||||||||||||  | | |||     |||  | || ||||||||||  ||||||||||||||| |||| |||||||||||||||    
T  11801254 tggtttcaacatacctcccgcttctcttggatcaataggtggtgttgctattgttctcttcactcctatctacgaccgtttattcgtgccactagcaaga 11801353  T
Q  209 agtatcactggaaa 222  Q
      ||| ||||||||    
T  11801354 gttataactggaaa 11801367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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