View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10760_low_27 (Length: 207)
Name: NF10760_low_27
Description: NF10760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10760_low_27 |
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| [»] chr7 (1 HSPs) |
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| [»] scaffold0429 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 25873311 - 25873102
Alignment:
| Q |
1 |
attttaatatgagtagtgctagcgatagtttctttgaaacttagtctttgttctgtcgcactacactgcattgcttgtgctctcatttgtgaaaccattt |
100 |
Q |
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| T |
25873311 |
attttaatatgagtggtgctagcgatagtttctttgaaacttagtctttgttctgtcgcactacactgcattgcttgtgctctcatttgtgaaaccattt |
25873212 |
T |
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| Q |
101 |
tattattcttagaa-aaaacttaaaggttatcaacacccaaataaaaaccgagagaaagac--aattaaaaccttcaaatttagttcaagaaaatagcaa |
197 |
Q |
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| T |
25873211 |
tattattcttagaattttttttaaaggttatcaacacccaaataaaaactgagagaaagacaaaattaaaaccttcaaatttagttcaagaaaatagcaa |
25873112 |
T |
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| Q |
198 |
tagtttgatt |
207 |
Q |
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|||||||||| |
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| T |
25873111 |
tagtttgatt |
25873102 |
T |
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Target: scaffold0429 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0429
Description:
Target: scaffold0429; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 72 - 137
Target Start/End: Original strand, 12240 - 12304
Alignment:
| Q |
72 |
tgcttgtgctctcatttgtgaaaccattttattattcttagaaaaaacttaaaggttatcaacacc |
137 |
Q |
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| T |
12240 |
tgcttgtgttctcatttgtgaaaccatgttcttattcttagaaaaaacttaaa-gttatcaacacc |
12304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 72 - 137
Target Start/End: Complemental strand, 52274372 - 52274308
Alignment:
| Q |
72 |
tgcttgtgctctcatttgtgaaaccattttattattcttagaaaaaacttaaaggttatcaacacc |
137 |
Q |
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| T |
52274372 |
tgcttgtgttctcatttgtgaaaccatgttcttattcttagaaaaaacttaaa-gttatcaacacc |
52274308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 72 - 137
Target Start/End: Original strand, 16353292 - 16353357
Alignment:
| Q |
72 |
tgcttgtgctctcatttgtgaaaccattttattattcttagaaaaaacttaaaggttatcaacacc |
137 |
Q |
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|||||||| ||||||||||||||| || || ||||||||||||||| |||||| |||||||||||| |
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| T |
16353292 |
tgcttgtgttctcatttgtgaaactatgttcttattcttagaaaaatcttaaaagttatcaacacc |
16353357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 137
Target Start/End: Original strand, 11993927 - 11993991
Alignment:
| Q |
72 |
tgcttgtgctctcatttgtgaaaccattttattattcttagaaaaaacttaaaggttatcaacacc |
137 |
Q |
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|||||||| ||||||||||| |||||| || ||||||||||||||||| |||| |||||||||||| |
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| T |
11993927 |
tgcttgtgttctcatttgtggaaccatgttcttattcttagaaaaaacataaa-gttatcaacacc |
11993991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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