View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10760_low_3 (Length: 369)
Name: NF10760_low_3
Description: NF10760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10760_low_3 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 1701974 - 1702342
Alignment:
| Q |
1 |
attttcattcaaaagttgaaacaatattatcatccaaatttaagtctctctacaccgatggttacactgaataaataaaacacaagccatatcttaactc |
100 |
Q |
| |
|
|||||||||||||||||||||| || || |||| |||| |||| || ||||||||||||||| ||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
1701974 |
attttcattcaaaagttgaaactatgttttcatacaaagttaaatccctctacaccgatggtggcactgaatacataaaactcaagccatatcttaactc |
1702073 |
T |
|
| Q |
101 |
tcatggtatatctcacgatatcagcccaccgtacactcccgaacatattggtattgcagaacgcaaacatcgtcatatagtagaaacatcgctcaccctc |
200 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1702074 |
tcatggtatatctcactatatcagcccaccgtacactcccgaacatattggtattgcagaacgcaaacatcgtcatatagtagaaacatcgctcaccctc |
1702173 |
T |
|
| Q |
201 |
atgtctcactctcatgttccacaaaaattctggtgttatgccttccaaatggcggtgtatttaataaatcgcatgacaacaacacatcttaaaaacaaat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
1702174 |
atgtctcactctcatgttccacaaaaattctggtgttatgccttccaaatggcggtgtatttaataaatcgcatgccaacaacacatcttaaaaacaaat |
1702273 |
T |
|
| Q |
301 |
gtcctaatgaaattctgtttggttccactcctaattatcttaatcttggagtctttggatatctctgct |
369 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||| |
|
|
| T |
1702274 |
gtcctcatgaaattctgtttggttccactcctaattatcttaatcttcgagtctttggatgtctgtgct |
1702342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 123 - 253
Target Start/End: Original strand, 5400832 - 5400962
Alignment:
| Q |
123 |
agcccaccgtacactcccgaacatattggtattgcagaacgcaaacatcgtcatatagtagaaacatcgctcaccctcatgtctcactctcatgttccac |
222 |
Q |
| |
|
|||||||| || ||||| ||||| ||||| ||||| ||||||||||| || |||||||||||||| | ||||| || | ||||||||| ||| || | |
|
|
| T |
5400832 |
agcccaccttatactcctgaacacattggcattgctgaacgcaaacaccgccatatagtagaaactgctctcacacttctctctcactcttctgtacctc |
5400931 |
T |
|
| Q |
223 |
aaaaattctggtgttatgccttccaaatggc |
253 |
Q |
| |
|
||| ||||||||||||||| || |||||||| |
|
|
| T |
5400932 |
aaacattctggtgttatgcttttcaaatggc |
5400962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 123 - 253
Target Start/End: Original strand, 3541807 - 3541937
Alignment:
| Q |
123 |
agcccaccgtacactcccgaacatattggtattgcagaacgcaaacatcgtcatatagtagaaacatcgctcaccctcatgtctcactctcatgttccac |
222 |
Q |
| |
|
|||||||| || ||||| ||||| ||||| ||||| ||||||||||| || |||||||||||||| | ||||| || | ||||||||| ||| || | |
|
|
| T |
3541807 |
agcccaccttatactcctgaacacattggcattgctgaacgcaaacaccgccatatagtagaaactgctctcacacttctctctcactcttctgtacctc |
3541906 |
T |
|
| Q |
223 |
aaaaattctggtgttatgccttccaaatggc |
253 |
Q |
| |
|
||| ||||||||||||||| || |||||||| |
|
|
| T |
3541907 |
aaacattctggtgttatgcttttcaaatggc |
3541937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 187
Target Start/End: Complemental strand, 26592339 - 26592278
Alignment:
| Q |
126 |
ccaccgtacactcccgaacatattggtattgcagaacgcaaacatcgtcatatagtagaaac |
187 |
Q |
| |
|
||||| |||||||| ||||||||||| |||||||||||||||||| | |||||||| ||||| |
|
|
| T |
26592339 |
ccaccttacactcctgaacatattggcattgcagaacgcaaacattgccatatagtcgaaac |
26592278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University