View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10760_low_4 (Length: 356)
Name: NF10760_low_4
Description: NF10760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10760_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 37 - 337
Target Start/End: Original strand, 32870045 - 32870345
Alignment:
| Q |
37 |
aagttgtgaattttagtttaatttagtatcaaatttctgttgacaggttgcagattttggtcttgcaaaggatgcacctgattccagtactcccatttct |
136 |
Q |
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| T |
32870045 |
aagttgtgaatattagtttaatttagtatcgaatttctgttgaaaggttgctgattttggtcttgcaaaggattcacctgattccagcactcacgtttct |
32870144 |
T |
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| Q |
137 |
actcaagtgaaggggacttttgggtacgaacaaatttattcccttcctctcaacatatcatttatgatatattaagctcatgaattatcaatagctgctt |
236 |
Q |
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|||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32870145 |
actcaagtgaaggggactttcgggtatgaaaaaatttattcccttcctctcaacatatcatttatgatatattaagctcatgaattatcaatagctgctt |
32870244 |
T |
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| Q |
237 |
acaggtatctggatccagaatatgcttatactggacaacttactgataaatcagatgtttactcttatggagtcgtgctccttgagttaataactggacg |
336 |
Q |
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| T |
32870245 |
acaggtatctggatccagaatatgcttatactggacgacttactgataaatccgatgtttactcttatggagtcgtgctccttgagttaataactggacg |
32870344 |
T |
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| Q |
337 |
a |
337 |
Q |
| |
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| |
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| T |
32870345 |
a |
32870345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 37 - 185
Target Start/End: Original strand, 32903347 - 32903496
Alignment:
| Q |
37 |
aagttgtgaattttagtttaatttagtatcaaatttctgttgacaggttgcagattttggtcttgcaaaggatgcacctgattccagtactcccatttct |
136 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||| || |||| ||||| |
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| T |
32903347 |
aagttgtgaattttagtttaatttagtatcaaatttctgttgacaggttgctgattttggtcttgcaaagattgcttctgatctcaacactcatgtttct |
32903446 |
T |
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| Q |
137 |
actcaagtgaaggggacttttgggtacg-aacaaatttattcccttcctc |
185 |
Q |
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| T |
32903447 |
actcgagtgatggggactttcgggtatgaaacaaatttatttccttcctc |
32903496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 203 - 338
Target Start/End: Original strand, 32903541 - 32903676
Alignment:
| Q |
203 |
atatattaagctcatgaattatcaatagctgcttacaggtatctggatccagaatatgcttatactggacaacttactgataaatcagatgtttactctt |
302 |
Q |
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|||||| |||||||||| |||| || |||| ||||||||||||| ||||||||||||| || |||| ||||||| |||||||||||||||| ||||| |
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| T |
32903541 |
atatatcaagctcatgagctatctattgctgtctacaggtatctggctccagaatatgctgctagtggaaaacttaccgataaatcagatgttttctctt |
32903640 |
T |
|
| Q |
303 |
atggagtcgtgctccttgagttaataactggacgac |
338 |
Q |
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| T |
32903641 |
atggagtcatgctccttgagttattaactggacgac |
32903676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 221 - 337
Target Start/End: Original strand, 16394571 - 16394687
Alignment:
| Q |
221 |
ttatcaatagctgcttacaggtatctggatccagaatatgcttatactggacaacttactgataaatcagatgtttactcttatggagtcgtgctccttg |
320 |
Q |
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|||||||| ||||||||||||||| ||| ||||||||||| | || |||||||||||| || ||||||||||||| ||||||||||||| | ||||||| |
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| T |
16394571 |
ttatcaattgctgcttacaggtatatggctccagaatatgtctctagtggacaacttacagacaaatcagatgttttctcttatggagtcatactccttg |
16394670 |
T |
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| Q |
321 |
agttaataactggacga |
337 |
Q |
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||||||||||||||||| |
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| T |
16394671 |
agttaataactggacga |
16394687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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