View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10760_low_6 (Length: 340)
Name: NF10760_low_6
Description: NF10760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10760_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 19 - 329
Target Start/End: Complemental strand, 7328107 - 7327797
Alignment:
| Q |
19 |
ggataaacatgggagaagatgagtttgcgaaaaatatcacaagattttgtaaccataggggcaacaaagtcttggaaagattaaaatcagagctacaggt |
118 |
Q |
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| T |
7328107 |
ggataaacatgggagaagatgagtttgcgaaaaatatcacaagattttgtaaccataggggtgacaaagttttggaaagattaaaatcagagctaaaggc |
7328008 |
T |
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| Q |
119 |
acaaattgaggatgaggagaaggtggagacaatgataaggaaattaaggtggagtgtggaggtagaatttgatcaaagcattattttatggcatattgca |
218 |
Q |
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| T |
7328007 |
acaaattgaggacgaggagaaggtggagacaatgataaggaaattaagatggagtgtggaggtagaatttgatcaaagcattattttatggcatattgca |
7327908 |
T |
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| Q |
219 |
acaaatatatgttataattctgaatcagatgaagaagttttagaaaatggaaggactttaagttataaagaagcaagcaaatgtttatcagagtatatgt |
318 |
Q |
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| T |
7327907 |
acaaatatatgttataattctgaatcagacgaagaagttttggaaaagggaagggttttaagttataaagaagcaagcaaatgtttatcagagtatatgt |
7327808 |
T |
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| Q |
319 |
tatatcttctt |
329 |
Q |
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| T |
7327807 |
tatatcttctt |
7327797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 174 - 329
Target Start/End: Complemental strand, 6805800 - 6805651
Alignment:
| Q |
174 |
gtggaggtagaatttgatcaaagcattattttatggcatattgcaacaaatatatgttataattctgaatcagatgaagaagttttagaaaatggaagga |
273 |
Q |
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| T |
6805800 |
gtggaggtagaatttgatcaaagcattctgttatggcatgttgcaacaaatgtatgtgataattctgtataaggtgaagaagttttggaaaatgggag-- |
6805703 |
T |
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| Q |
274 |
ctttaagttataaagaagcaagcaaatgtttatcagagtatatgttatatcttctt |
329 |
Q |
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| T |
6805702 |
----aagttatagagaagcaagcaaatggttatcagagtatatgttatatcttctt |
6805651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 6805945 - 6805861
Alignment:
| Q |
20 |
gataaacatgggagaagatgagtttgcgaaaaatatcacaagattttgtaaccataggggcaacaaagtcttggaaagattaaaa |
104 |
Q |
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| T |
6805945 |
gataaacaagcgaaaagatgagtttgcaaaacatatcacaagaatttgtgacgataggggcaacaaagctttggaagaattaaaa |
6805861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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