View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10760_low_7 (Length: 311)
Name: NF10760_low_7
Description: NF10760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10760_low_7 |
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| [»] scaffold0002 (2 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 477570 - 477863
Alignment:
| Q |
1 |
tattgagaatatggagaattatggcaaagcaatggaggaggttatgagagggtgtgagttggctaaccaactaaggcaagtactgctaaaaaataatgag |
100 |
Q |
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| T |
477570 |
tattgagaatatggataattatggcaaagcaatggaggaggttatgagagggtgtgagttggctaaccaactaaggcaagtactgctaaaaaataatgag |
477669 |
T |
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| Q |
101 |
ttgacaacaacttcattagctcaaaatcttgtcaacaatgtcatcaactcatttaatagtgccatattcatcttgagcaaagacaaaaacatccctatag |
200 |
Q |
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| T |
477670 |
ttgacaacaacttcattagctcaaaatcttgtcaacaatgtcatcaactcatttaatagtgccatattcatcttgagcaatgacaaaaacatccctatag |
477769 |
T |
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| Q |
201 |
accaagtacaaaatgacttttcttccattaatccagtaattagatctatcgacttcaaagaaacctctactactacaagaggatgctacaaaag |
294 |
Q |
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| T |
477770 |
accaagtacaaaatgacttttcttccattaatccagtaattagatctatcgacttcaaagaaacctctactactacaagaggatgctacaaaag |
477863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 477303 - 477345
Alignment:
| Q |
3 |
ttgagaatatggagaattatggcaaagcaatggaggaggttat |
45 |
Q |
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| T |
477303 |
ttgagaatatggagaatcatggcaaggcaatggaggaggttat |
477345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 121 - 263
Target Start/End: Complemental strand, 12467653 - 12467517
Alignment:
| Q |
121 |
tcaaaatcttgtcaacaatgtcatcaactcatttaatagtgccatattcatcttgagcaaagacaaaaacatccctatagaccaagtacaaaatgacttt |
220 |
Q |
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| T |
12467653 |
tcaacatcttgtcaacaatgtcatcaactcatttaacaataccatatttctcatgagcaaaggaaa------ccctagtgaccaaattcaaaaggaattt |
12467560 |
T |
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| Q |
221 |
tcttccattaatccagtaattagatctatcgacttcaaagaaa |
263 |
Q |
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| T |
12467559 |
tcttccattgctccagtagttagatctgtcgacttcaaagaaa |
12467517 |
T |
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