View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10760_low_9 (Length: 297)
Name: NF10760_low_9
Description: NF10760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10760_low_9 |
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| [»] scaffold0020 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 51458662 - 51458383
Alignment:
| Q |
1 |
tggtcatgaggggcatccctataactagataatggaaaattgtctaagccggttctacctgctttaaaggaatgcaattgacatgtctgaactctctgaa |
100 |
Q |
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|||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51458662 |
tggtcatgaggggcatccatagagctagataatggaaaattgtctaagccggttctacctgctttaaaggaatgcaattgacatgtctgaactctctgaa |
51458563 |
T |
|
| Q |
101 |
atgcttctctagatattccttcaatttgggtacatcctctctccgaaaaatatcccagagagcaccttctaagggatcctctccaaccatcaggtcatca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51458562 |
atgcttctctagatattccttcaatttgggtacatcctctctccgaaaaatatcccagagagcaccttctaagggatcctctccaaccatcaggtcatca |
51458463 |
T |
|
| Q |
201 |
tcattagtgtcaaagagttggtgaaacatatcaaccgcctccccatcatcatgtagctccctcttatcttgctcaaggtg |
280 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
51458462 |
tcattagtgtcagagagttggtgaaacatatcaaccgcctccccatcaccatgtagctccctcttatcttgctcaaggtg |
51458383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 56 - 174
Target Start/End: Original strand, 30204068 - 30204186
Alignment:
| Q |
56 |
tacctgctttaaaggaatgcaattgacatgtctgaactctctgaaatgcttctctagatattccttcaatttgggtacatcctctctccgaaaaatatcc |
155 |
Q |
| |
|
|||||||||||||||| ||||| |||||| |||||||||||||||||||||| || |||||| | |||||| ||||||||||||||||||||||||||| |
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| T |
30204068 |
tacctgctttaaaggagagcaatagacatgcctgaactctctgaaatgcttctttaaatattcttccaatttaggtacatcctctctccgaaaaatatcc |
30204167 |
T |
|
| Q |
156 |
cagagagcaccttctaagg |
174 |
Q |
| |
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||||||||||| ||||||| |
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| T |
30204168 |
cagagagcaccatctaagg |
30204186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 56 - 172
Target Start/End: Complemental strand, 51483175 - 51483059
Alignment:
| Q |
56 |
tacctgctttaaaggaatgcaattgacatgtctgaactctctgaaatgcttctctagatattccttcaatttgggtacatcctctctccgaaaaatatcc |
155 |
Q |
| |
|
|||||||||||||||| ||||| |||||| ||||||||| |||||||||||| || |||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
51483175 |
tacctgctttaaaggagagcaatggacatgcctgaactctttgaaatgcttctttaaatattcctccaattcaggtacatcctctctccgaaaaatatcc |
51483076 |
T |
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| Q |
156 |
cagagagcaccttctaa |
172 |
Q |
| |
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|| |||||||| ||||| |
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| T |
51483075 |
caaagagcaccatctaa |
51483059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 56 - 172
Target Start/End: Complemental strand, 51500012 - 51499896
Alignment:
| Q |
56 |
tacctgctttaaaggaatgcaattgacatgtctgaactctctgaaatgcttctctagatattccttcaatttgggtacatcctctctccgaaaaatatcc |
155 |
Q |
| |
|
|||||||||||||||| | | | |||||| |||||||||||||||||||||| || |||||||| ||| || || |||||||||||||||||||||||| |
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| T |
51500012 |
tacctgctttaaaggagaggagtggacatgcctgaactctctgaaatgcttctttaaatattcctccaacttaggaacatcctctctccgaaaaatatcc |
51499913 |
T |
|
| Q |
156 |
cagagagcaccttctaa |
172 |
Q |
| |
|
||||||||||| ||||| |
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| T |
51499912 |
cagagagcaccgtctaa |
51499896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 153; Significance: 4e-81; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 8 - 280
Target Start/End: Complemental strand, 43162925 - 43162653
Alignment:
| Q |
8 |
gaggggcatccctataactagataatggaaaattgtctaagccggttctacctgctttaaaggaatgcaattgacatgtctgaactctctgaaatgcttc |
107 |
Q |
| |
|
||||||||||| || | ||||||||||||||||||||||||| | || |||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
43162925 |
gaggggcatccatagagctagataatggaaaattgtctaagctgattttacctgctttaaaggactgcaattgacatgtctgaactctctgaaatgcttt |
43162826 |
T |
|
| Q |
108 |
tctagatattccttcaatttgggtacatcctctctccgaaaaatatcccagagagcaccttctaagggatcctctccaaccatcaggtcatcatcattag |
207 |
Q |
| |
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| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| || |||| |||||||| |
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| T |
43162825 |
tttatatattccttcaatttgggtacatcctctctccgaaaaatatcccagagagcaccttctaaggggtcccctccaaccaccaagtcactatcattag |
43162726 |
T |
|
| Q |
208 |
tgtcaaagagttggtgaaacatatcaaccgcctccccatcatcatgtagctccctcttatcttgctcaaggtg |
280 |
Q |
| |
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|||| || || | ||||| || |||||| |||| | |||| ||| || ||||||||||||||||||||||| |
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| T |
43162725 |
tgtcggagtgtcgatgaaatatttcaaccacctctcgatcaccataaaggtccctcttatcttgctcaaggtg |
43162653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 56 - 176
Target Start/End: Complemental strand, 27398647 - 27398527
Alignment:
| Q |
56 |
tacctgctttaaaggaatgcaattgacatgtctgaactctctgaaatgcttctctagatattccttcaatttgggtacatcctctctccgaaaaatatcc |
155 |
Q |
| |
|
||||| || ||||||| ||||| |||||| |||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
27398647 |
tacctcctctaaaggagagcaatggacatgcctgaactctctgaaatgcttcttcagatattcctgcaatgcaggtacatcctctctccgaaaaatatcc |
27398548 |
T |
|
| Q |
156 |
cagagagcaccttctaaggga |
176 |
Q |
| |
|
|| |||||||| ||||||||| |
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| T |
27398547 |
caaagagcaccatctaaggga |
27398527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 56 - 172
Target Start/End: Original strand, 20866760 - 20866876
Alignment:
| Q |
56 |
tacctgctttaaaggaatgcaattgacatgtctgaactctctgaaatgcttctctagatattccttcaatttgggtacatcctctctccgaaaaatatcc |
155 |
Q |
| |
|
|||||||||||||||| |||| || ||| |||||||||| ||||||||| ||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
20866760 |
tacctgctttaaaggagaacaatagatatgcctgaactctccagaatgcttcttcagatattccttcaatttcggcacatcctctctccgaaaaatatcc |
20866859 |
T |
|
| Q |
156 |
cagagagcaccttctaa |
172 |
Q |
| |
|
||| ||||||| ||||| |
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| T |
20866860 |
cagtgagcaccatctaa |
20866876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 56 - 172
Target Start/End: Original strand, 135504 - 135620
Alignment:
| Q |
56 |
tacctgctttaaaggaatgcaattgacatgtctgaactctctgaaatgcttctctagatattccttcaatttgggtacatcctctctccgaaaaatatcc |
155 |
Q |
| |
|
|||||||||||||||| ||||| || ||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
135504 |
tacctgctttaaaggagagcaatagatatgcctgaactctctgaaatgcttcatcagatattccttcaatttaggtacatcctctctccgaaaaatatcc |
135603 |
T |
|
| Q |
156 |
cagagagcaccttctaa |
172 |
Q |
| |
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||||||||||| ||||| |
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| T |
135604 |
cagagagcaccatctaa |
135620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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