View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10761_low_1 (Length: 665)
Name: NF10761_low_1
Description: NF10761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10761_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 305; Significance: 1e-171; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 110 - 524
Target Start/End: Original strand, 9014685 - 9015095
Alignment:
| Q |
110 |
ttatatttatctttcgatcaaacttcagattattttagctcgcttcctctaaaaatcagagggttaacactaaaacaatttttt-aaaaagattcaactt |
208 |
Q |
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| T |
9014685 |
ttatatttatctctcgaccaaactccaaattgttttaactcgctttctctaaaaatcagagggttaacactaaaacaatttttttaaaaagattcaactt |
9014784 |
T |
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| Q |
209 |
gggatgaaagaaaaaagatcttccactaatgactcaagattaccccataacaagtccaaataactcaagattagtgatgnnnnnnntacaaaatatatag |
308 |
Q |
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| T |
9014785 |
aggatgaaagaaaaaagatcttccactaatgactcaagattaccccataacaagtccaaataactcaagattagtgatgaaaaaa-tacaatatatatag |
9014883 |
T |
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| Q |
309 |
taaaaggacctctcctattaaatggttgtagttgagtactactcattgagtcattgtcatggctagagagataaaacaaaacgtcgtgtctttggttgca |
408 |
Q |
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| T |
9014884 |
taaaaggacctctcctatt----ggttgtggttgagtactactcattgagtcattgtcatggctagagagataaaacaaaacgtcgtgtctttggttgca |
9014979 |
T |
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| Q |
409 |
aaaaccctcctgctaaattgatagtggtaggttctggctatgtacactagtatatgctttttggtcacgcttttaatcctttcctttcttcacttgccac |
508 |
Q |
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| T |
9014980 |
aaaaccctcctgctaaactgataatgttaggttctggctatgtacactagtatatgctttttggtcacgcttttaatcctttcctctcttcactttccac |
9015079 |
T |
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| Q |
509 |
atgaagataattttgt |
524 |
Q |
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| T |
9015080 |
atgaagataattttgt |
9015095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 586 - 665
Target Start/End: Original strand, 9015157 - 9015234
Alignment:
| Q |
586 |
gacccatcaaaataagtttccccattgaggcccctgcttctagtaatggcaaaagcacatattcatctttcatacattcc |
665 |
Q |
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| T |
9015157 |
gacccatcaaaataagtttccccattgaggcccctgcttctagtaatggcaaaagcac--attcatctttcatacattcc |
9015234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 9014624 - 9014688
Alignment:
| Q |
22 |
tagacttgtttcattaacaatgcacttatagcaaccactaaaatggagtgtccaatgtcacttat |
86 |
Q |
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| T |
9014624 |
tagacttgtttcattaacaatgcacttatagcaaccgctaaaatggagtgtccaatgtcacttat |
9014688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 91 - 143
Target Start/End: Complemental strand, 6459450 - 6459399
Alignment:
| Q |
91 |
ggaataattcttgaccatattatatttatctttcgatcaaacttcagattatt |
143 |
Q |
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| T |
6459450 |
ggaacaattcttgaccacattatatttgt-tttagatcaaacttcagattatt |
6459399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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