View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10761_low_10 (Length: 372)
Name: NF10761_low_10
Description: NF10761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10761_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 358; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 28830082 - 28830439
Alignment:
| Q |
1 |
caacaataacaactgggattgctatgatgatgccagttcttgatgtgtgttccttttctacacaaatcagaaaattcggataagaaaagcagaaagaaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28830082 |
caacaataacaactgggattgctatgatgatgccagttcttgatgtgtgttccttttctacacaaatcagaaaattcggataagaaaagcagaaagaaaa |
28830181 |
T |
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| Q |
101 |
aataattatataatatgtatttttaatataattaaattctatatcttttacgtgagtttaaatggttttgactataccatatgactattttccttattag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28830182 |
aataattatataatatgtatttttaatataattaaattctatatcttttacgtgagtttaaatggttttgactataccatatgactattttccttattag |
28830281 |
T |
|
| Q |
201 |
agagaattttgaataaattttcacaaagtgtttattgtttaaacttctgttgtaggatgacatcatgaaaacaaagtagaagaagatgaaaaagataatg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28830282 |
agagaattttgaataaattttcacaaagtgtttattgtttaaacttctgttgtaggatgacatcatgaaaacaaagtagaagaagatgaaaaagataatg |
28830381 |
T |
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| Q |
301 |
attgttgcacaaataaattctaaagcatatgtaatataataaacttgaagtttgattt |
358 |
Q |
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| T |
28830382 |
attgttgcacaaataaattctaaagcatatgtaatataataaacttgaagtttgattt |
28830439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 5 - 67
Target Start/End: Original strand, 28855803 - 28855865
Alignment:
| Q |
5 |
aataacaactgggattgctatgatgatgccagttcttgatgtgtgttccttttctacacaaat |
67 |
Q |
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| T |
28855803 |
aataacaattgggattgctatgataatggcagttctggatgtgtgatcctttcctacacaaat |
28855865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 28860991 - 28861065
Alignment:
| Q |
1 |
caacaataacaactgggattgctatgatgatgccagttcttgatgtgtgttccttttctacacaaatcagaaaat |
75 |
Q |
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|||||||||||| |||||||||||| |||||| |||||||||||| || | |||| |||||| ||||||||||| |
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| T |
28860991 |
caacaataacaattgggattgctattatgatggaagttcttgatgtatgattctttcctacacgaatcagaaaat |
28861065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 43449529 - 43449574
Alignment:
| Q |
92 |
gaaagaaaaaataattatataatatgtatttttaatataattaaat |
137 |
Q |
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| T |
43449529 |
gaaagagaaaataattaaataatatgtatttttaaaataattaaat |
43449574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 124
Target Start/End: Complemental strand, 6411036 - 6411003
Alignment:
| Q |
91 |
agaaagaaaaaataattatataatatgtattttt |
124 |
Q |
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|||||||||||||||||| ||||||||||||||| |
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| T |
6411036 |
agaaagaaaaaataattaaataatatgtattttt |
6411003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 135
Target Start/End: Complemental strand, 5536363 - 5536323
Alignment:
| Q |
95 |
agaaaaaataattatataatatgtatttttaatataattaa |
135 |
Q |
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| T |
5536363 |
agaaaaaataattaaataatatatatttttaaaataattaa |
5536323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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