View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10761_low_13 (Length: 352)

Name: NF10761_low_13
Description: NF10761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10761_low_13
NF10761_low_13
[»] chr8 (3 HSPs)
chr8 (72-346)||(15437451-15437724)
chr8 (72-346)||(15528755-15529028)
chr8 (179-263)||(8834571-8834655)
[»] chr2 (3 HSPs)
chr2 (72-346)||(30936122-30936396)
chr2 (72-144)||(30975708-30975782)
chr2 (94-144)||(8938334-8938384)
[»] chr1 (1 HSPs)
chr1 (150-346)||(22589260-22589456)
[»] chr5 (2 HSPs)
chr5 (176-263)||(4377019-4377106)
chr5 (72-144)||(19909168-19909240)
[»] scaffold0209 (2 HSPs)
scaffold0209 (176-263)||(7123-7211)
scaffold0209 (176-263)||(20577-20665)
[»] chr4 (1 HSPs)
chr4 (72-144)||(15856827-15856897)


Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 72 - 346
Target Start/End: Complemental strand, 15437724 - 15437451
Alignment:
Q  72 gccatgtttgtgtattttggtttggtctaaaatggtctggccgggcatctggtctgatggagctttcagcccagtggcatttctgtagcatttgattgat 171  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15437724 gccatgtttgtgtattttggtttggtctaaaatggtctgaccgggcatctggtctgatggagctttcagcccagtggcatttctgtagcatttgattgat 15437625  T
Q  172 ataggacagtggctgcatttatgttaaatggattaaaatagaacatatctttgaagtttttcagtagcatttgattttagtgttgactctgtttgatttt 271  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  15437624 ataggacagtggctgcatttctgttaaatggattaaaatagcacata-ctttgaaatctttcagtagcatttgattttagtgttgactctgtttgatttt 15437526  T
Q  272 agtgttgactatgtagagaaatgtgaatttagaacaaaacttgttgtaggtaattgtctttcatatctctgcttc 346  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  15437525 agtgttgactatgtagagaaatgtgaatttagaacaaaacttgttataggtaattgtctttcatatctttgcttc 15437451  T

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Target: chr8; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 72 - 346
Target Start/End: Complemental strand, 15529028 - 15528755
Alignment:
Q  72 gccatgtttgtgtattttggtttggtctaaaatggtctggccgggcatctggtctgatggagctttcagcccagtggcatttctgtagcatttgattgat 171  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15529028 gccatgtttgtgtattttggtttggtctaaaatggtctgaccgggcatctggtctgatggagctttcagcccagtggcatttctgtagcatttgattgat 15528929  T
Q  172 ataggacagtggctgcatttatgttaaatggattaaaatagaacatatctttgaagtttttcagtagcatttgattttagtgttgactctgtttgatttt 271  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  15528928 ataggacagtggctgcatttctgttaaatggattaaaatagcacata-ctttgaaatctttcagtagcatttgattttagtgttgactctgtttgatttt 15528830  T
Q  272 agtgttgactatgtagagaaatgtgaatttagaacaaaacttgttgtaggtaattgtctttcatatctctgcttc 346  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  15528829 agtgttgactatgtagagaaatgtgaatttagaacaaaacttgttataggtaattgtctttcatatctttgcttc 15528755  T

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Target: chr8; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 179 - 263
Target Start/End: Complemental strand, 8834655 - 8834571
Alignment:
Q  179 agtggctgcatttatgttaaatggattaaaatagaacatatctttgaagtttttcagtagcatttgattttagtgttgactctgt 263  Q
    ||||||||||||| ||||||||||||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  8834655 agtggctgcatttttgttaaatggattaaaatagcgcatatctttgaagtctttcagtagcatttgattttagtgttgactctgt 8834571  T

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Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 72 - 346
Target Start/End: Original strand, 30936122 - 30936396
Alignment:
Q  72 gccatgtttgtgtattttggtttggtctaaaatggtctggccgggcatctggtctgatggagctttcagcccagtggcatttctgtagcatttgattgat 171  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  30936122 gccatgtttgtgagttttggtttggtctaaaatggtctggccgggcatctggtctgatggagctttcagtccattggcatttctgtagcatttgattgat 30936221  T
Q  172 ataggacagtggctgcatttatgttaaatggattaaaatagaacatatctttgaagtttttcagtagcatttgattttagtgttgactctgtttgatttt 271  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  30936222 ataggacagtggctgcatttatattaaatggattaaaatagaacatatctttgaagtctttcagtagcatttgattttagtgttgactctgtttgatttt 30936321  T
Q  272 agtgttgactatgtagagaaatgtgaatttagaacaaaacttgttgtaggtaattgtctttcatatctctgcttc 346  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||    
T  30936322 agtgttgactatgtagagaaatgtgaatttagaacaaaacttgttatagataattgtctttcatatctttgcttc 30936396  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 72 - 144
Target Start/End: Complemental strand, 30975782 - 30975708
Alignment:
Q  72 gccatgtttgtgtattttggtttggtctaaaatggtctggccgggc--atctggtctgatggagctttcagccca 144  Q
    |||||||||||||||||||||||||||||||||||| |||||| ||  |||||||||||||||||||||| ||||    
T  30975782 gccatgtttgtgtattttggtttggtctaaaatggtttggccgcgcatatctggtctgatggagctttcaaccca 30975708  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 94 - 144
Target Start/End: Complemental strand, 8938384 - 8938334
Alignment:
Q  94 tggtctaaaatggtctggccgggcatctggtctgatggagctttcagccca 144  Q
    |||||||| |||||||||| |||||||||||||||||||||||||| ||||    
T  8938384 tggtctaacatggtctggctgggcatctggtctgatggagctttcaaccca 8938334  T

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Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 150 - 346
Target Start/End: Complemental strand, 22589456 - 22589260
Alignment:
Q  150 atttctgtagcatttgattgatataggacagtggctgcatttatgttaaatggattaaaatagaacatatctttgaagtttttcagtagcatttgatttt 249  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  22589456 atttctgtagcatttgattgatataggacagtggctgcatttatgttaaatggattcaaatagaacatatctttgaagtctttcagtagcatttgatttt 22589357  T
Q  250 agtgttgactctgtttgattttagtgttgactatgtagagaaatgtgaatttagaacaaaacttgttgtaggtaattgtctttcatatctctgcttc 346  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  22589356 agtgttgactctgtttgattttagtgttgactatgtagagaaatgtgaatttagaacaaaacttgttgtaggtaattgtctttcatatctttgcttc 22589260  T

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Target: chr5 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 176 - 263
Target Start/End: Complemental strand, 4377106 - 4377019
Alignment:
Q  176 gacagtggctgcatttatgttaaatggattaaaatagaacatatctttgaagtttttcagtagcatttgattttagtgttgactctgt 263  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  4377106 gacagtggctgcatttatgttaaatggattaaaatagcacatatctttgaaatctttcagtagcatttgattttagtgttgactctgt 4377019  T

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Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 72 - 144
Target Start/End: Original strand, 19909168 - 19909240
Alignment:
Q  72 gccatgtttgtgtattttggtttggtctaaaatggtctggccgggcatctggtctgatggagctttcagccca 144  Q
    |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||    
T  19909168 gccatgtttgtgtattttggtttggtctaaaatggtttggccgcgcatctggtctgatggagctttcaaccca 19909240  T

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Target: scaffold0209 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 176 - 263
Target Start/End: Original strand, 7123 - 7211
Alignment:
Q  176 gacagtggctgcatttat-gttaaatggattaaaatagaacatatctttgaagtttttcagtagcatttgattttagtgttgactctgt 263  Q
    |||| ||||||||||| | ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  7123 gacactggctgcattttttgttaaatggattaaaatagaacatatctttgaaatctttcagtagcatttgattttagtgttgactctgt 7211  T

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Target: scaffold0209; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 176 - 263
Target Start/End: Original strand, 20577 - 20665
Alignment:
Q  176 gacagtggctgcatttat-gttaaatggattaaaatagaacatatctttgaagtttttcagtagcatttgattttagtgttgactctgt 263  Q
    |||| ||||||||||| | ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  20577 gacactggctgcattttttgttaaatggattaaaatagaacatatctttgaaatctttcagtagcatttgattttagtgttgactctgt 20665  T

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Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 72 - 144
Target Start/End: Complemental strand, 15856897 - 15856827
Alignment:
Q  72 gccatgtttgtgtattttggtttggtctaaaatggtctggccgggcatctggtctgatggagctttcagccca 144  Q
    |||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||||||||| ||||    
T  15856897 gccatgtttgtgtattttggtttggtctaaaatggtttggcc--gcatctggtctgatggagctttcaaccca 15856827  T

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