View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10761_low_14 (Length: 345)

Name: NF10761_low_14
Description: NF10761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10761_low_14
NF10761_low_14
[»] chr4 (5 HSPs)
chr4 (1-326)||(47731649-47731978)
chr4 (85-326)||(26333912-26334152)
chr4 (93-326)||(50822894-50823124)
chr4 (91-324)||(11376216-11376441)
chr4 (143-323)||(12271172-12271351)
[»] chr5 (5 HSPs)
chr5 (85-326)||(11052044-11052284)
chr5 (142-326)||(24873964-24874147)
chr5 (85-326)||(11106634-11106874)
chr5 (91-197)||(30987097-30987203)
chr5 (151-228)||(4913900-4913977)
[»] chr7 (1 HSPs)
chr7 (91-326)||(9083023-9083256)
[»] chr2 (2 HSPs)
chr2 (85-237)||(43706607-43706759)
chr2 (233-326)||(43708934-43709026)
[»] chr6 (1 HSPs)
chr6 (91-201)||(12734486-12734595)
[»] chr1 (1 HSPs)
chr1 (143-325)||(35532707-35532888)
[»] chr8 (1 HSPs)
chr8 (91-182)||(17654871-17654961)
[»] chr3 (1 HSPs)
chr3 (85-171)||(41430547-41430633)


Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 47731978 - 47731649
Alignment:
Q  1 gaagtattgaaaaatgtagacaaaccaatacatatccattcaatccaaacagggctcttgaagtatctcaatctttgtctctcttaactgttttatctct 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||    
T  47731978 gaagtattgaaaaatgtagacaaaccaatacatatccactcaatccaaacagggctcttgaagtatctttatctttgtctctcttaactgttttatgtct 47731879  T
Q  101 tggattaaaacaacataagcataaaacctcattaggaaaccattgaggatgttgatacaatgaagagaatcggagtagcaaacaaaattagtaataccca 200  Q
    |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  47731878 tggattaaaacaacataagcatgaaacctcattgggaaaccattgaggatgttgatacaatgaagagaatcagagtagcaaacaaaattagtaataccca 47731779  T
Q  201 tttctttggccaacaggagacccttatagatgacataaagttcaacatacaagatatcaggtgaattttagatgtatcca-----gaaaagcctgataag 295  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||| || |||||||||||||||||     | |||||||||||||    
T  47731778 tttctttggccaacatgagacccttatagatgacataaagctcaacgtacaagatatcaagtaaattttagatgtatccaatccagtaaagcctgataag 47731679  T
Q  296 taaaaaacctgcatcatttcttaaaattcct 326  Q
     ||||||||||||||||||||||||||||||    
T  47731678 -aaaaaacctgcatcatttcttaaaattcct 47731649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 85 - 326
Target Start/End: Original strand, 26333912 - 26334152
Alignment:
Q  85 taactgttttatctcttggattaaaacaacataagcataaaacctcattaggaaaccattgaggatgttgatacaatgaagagaatcggagtagcaaaca 184  Q
    ||||| |||||| ||||| |||||||||||||||||||  ||||||||| ||   ||||| |||||||||||| |||| | |||||| |||||| |||||    
T  26333912 taactcttttatgtcttgaattaaaacaacataagcatgtaacctcattggggggccattaaggatgttgatataatgtaaagaatcagagtagaaaaca 26334011  T
Q  185 aaattagtaatacccatttctttggccaacaggagacccttatagatgacataaagttcaacatacaagatatcaggtgaattttagatgtatccagaaa 284  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||| |||||||  |||||||||||||||||| ||||||||  |||||  ||||||    
T  26334012 aaattagtaatacccatttctttggccaacaagatacccttatagatggcataaagcccaacatacaagatatcagatgaattttgaatgtacacagaaa 26334111  T
Q  285 agcctgataagtaaaaaacctgcatcatttcttaaaattcct 326  Q
    || |||| ||| ||||||||||||||||||||||||||||||    
T  26334112 agtctgacaag-aaaaaacctgcatcatttcttaaaattcct 26334152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 93 - 326
Target Start/End: Original strand, 50822894 - 50823124
Alignment:
Q  93 ttatctcttggattaaaacaacataagcataaaacctcattaggaaaccattgaggatgttgatacaatgaagagaatcggagtagcaaacaaaattagt 192  Q
    |||| ||||| ||||||||||||||||||| |||||||||| ||  ||||||||||||||||||||| || | ||| || |||||||||||||||| |||    
T  50822894 ttatgtcttgaattaaaacaacataagcatgaaacctcattgggggaccattgaggatgttgatacagtgtaaagagtcagagtagcaaacaaaatcagt 50822993  T
Q  193 aatacccatttctttggccaacaggagacccttatagatgacataaagttcaacatacaagatatcaggtgaattttagatgtatccagaaaagcctgat 292  Q
    ||||| ||||||||||||||||| |||||||||||||||| ||||||| ||| ||||||||  ||||  ||||||||  ||||||||||||||||||||     
T  50822994 aatactcatttctttggccaacaagagacccttatagatggcataaagctcatcatacaag--atcaaatgaattttgaatgtatccagaaaagcctgac 50823091  T
Q  293 aagtaaaaaacctgcatcatttcttaaaattcct 326  Q
    |||| |||||||||||| ||| ||||||||||||    
T  50823092 aagt-aaaaacctgcataattccttaaaattcct 50823124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 91 - 324
Target Start/End: Original strand, 11376216 - 11376441
Alignment:
Q  91 ttttatctcttggattaaaacaa-cataagcataaaacctcattaggaaaccattgaggatgttgatacaatgaagagaatcggagtagcaaacaaaatt 189  Q
    |||||| |||||||||| ||||| ||||||||| |||||||||||        ||| ||||| |||||||||| | |||||| ||||||||||||||||     
T  11376216 ttttatgtcttggattagaacaaacataagcatgaaacctcatta--------ttggggatggtgatacaatgtaaagaatcagagtagcaaacaaaatc 11376307  T
Q  190 agtaatacccatttctttggccaacaggagacccttatagatgacataaagttcaacatacaagatatcaggtgaattttagatgtatccagaaaagcct 289  Q
    ||||||||||||||||||||||||||  ||||||||||||||| |||| || ||| ||||||||||||||| ||||||||  ||||||| ||||||||||    
T  11376308 agtaatacccatttctttggccaacaaaagacccttatagatggcatagagctcagcatacaagatatcagatgaattttgaatgtatctagaaaagcct 11376407  T
Q  290 gataagtaaaaaacctgcatcatttcttaaaattc 324  Q
    || ||| ||||||||||||| ||||||||||||||    
T  11376408 gacaag-aaaaaacctgcataatttcttaaaattc 11376441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 143 - 323
Target Start/End: Complemental strand, 12271351 - 12271172
Alignment:
Q  143 ttgaggatgttgatacaatgaagagaatcggagtagcaaacaaaattagtaatacccatttctttggccaacaggagacccttatagatgacataaagtt 242  Q
    |||| ||||||||||||||| | ||| || || || ||||| |  || ||||||||||| ||||| | || || |||||| | ||||||| |||| |  |    
T  12271351 ttgatgatgttgatacaatgtaaagagtctgaataacaaactaggttggtaatacccatgtctttagtcatcaagagaccatgatagatggcatataact 12271252  T
Q  243 caacatacaagatatcaggtgaattttagatgtatccagaaaagcctgataagtaaaaaacctgcatcatttcttaaaatt 323  Q
    || ||||||| || ||||  ||||||   ||||| |||||||||||||| ||| || ||||||||||||||||||||||||    
T  12271251 cagcatacaaaatgtcagaagaatttggaatgtagccagaaaagcctgacaag-aagaaacctgcatcatttcttaaaatt 12271172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 126; Significance: 6e-65; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 85 - 326
Target Start/End: Original strand, 11052044 - 11052284
Alignment:
Q  85 taactgttttatctcttggattaaaacaacataagcataaaacctcattaggaaaccattgaggatgttgatacaatgaagagaatcggagtagcaaaca 184  Q
    ||||| |||||| ||||| ||||| ||||||||| ||| ||||||| || || ||||||||||||||||||||||||| | |||||| ||||||||||||    
T  11052044 taactcttttatatcttgaattaatacaacataaacattaaacctcgttggggaaccattgaggatgttgatacaatgtaaagaatcagagtagcaaaca 11052143  T
Q  185 aaattagtaatacccatttctttggccaacaggagacccttatagatgacataaagttcaacatacaagatatcaggtgaattttagatgtatccagaaa 284  Q
    |||| ||||||||| |||||||||||||||| |||||||||||||||| |||| || ||||||||||||||||||| || |||||  ||||| | |||||    
T  11052144 aaatcagtaatacctatttctttggccaacaagagacccttatagatggcatagagctcaacatacaagatatcagatggattttgaatgtacctagaaa 11052243  T
Q  285 agcctgataagtaaaaaacctgcatcatttcttaaaattcct 326  Q
    ||||||| ||| |||||| |||||||||||| ||||||||||    
T  11052244 agcctgacaag-aaaaaatctgcatcatttcgtaaaattcct 11052284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 142 - 326
Target Start/End: Complemental strand, 24874147 - 24873964
Alignment:
Q  142 attgaggatgttgatacaatgaagagaatcggagtagcaaacaaaattagtaatacccatttctttggccaacaggagacccttatagatgacataaagt 241  Q
    ||||| ||||||||||||||| | |||||| || ||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||| |||    
T  24874147 attgaagatgttgatacaatgtaaagaatcagaatagcaaacaaaatcagtaatacccatttctttagccaacaagagacccttatagatgacatagagt 24874048  T
Q  242 tcaacatacaagatatcaggtgaattttagatgtatccagaaaagcctgataagtaaaaaacctgcatcatttcttaaaattcct 326  Q
    ||  ||||||||||||||| ||||||||  ||||||||| |||| ||||| ||| ||||||||||||| ||||||||||||||||    
T  24874047 tcggcatacaagatatcagatgaattttgaatgtatccataaaatcctgacaag-aaaaaacctgcataatttcttaaaattcct 24873964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 85 - 326
Target Start/End: Complemental strand, 11106874 - 11106634
Alignment:
Q  85 taactgttttatctcttggattaaaacaacataagcataaaacctcattaggaaaccattgaggatgttgatacaatgaagagaatcggagtagcaaaca 184  Q
    ||||| |||||| ||||| || |||||| ||||| ||| ||||||||| |||  |||||| |||||||||||||||||||||||||  ||||||||||      
T  11106874 taactcttttatatcttgaatcaaaacagcataaacatgaaacctcatgaggggaccattaaggatgttgatacaatgaagagaattagagtagcaaaat 11106775  T
Q  185 aaattagtaatacccatttctttggccaacaggagacccttatagatgacataaagttcaacatacaagatatcaggtgaattttagatgtatccagaaa 284  Q
    |||| || | ||||||| | |||||||| ||  || |||| ||| ||| ||||||||||| || |||| |||| ||  ||||||| |||||| ||||| |    
T  11106774 aaatcagaattacccatgtttttggccagcaaaaggccctgatatatggcataaagttcagcaaacaaaatattagaagaattttggatgtaaccagaga 11106675  T
Q  285 agcctgataagtaaaaaacctgcatcatttcttaaaattcct 326  Q
    | || || |||| |||||| ||||| ||||||||||| ||||    
T  11106674 aacccgacaagt-aaaaacttgcataatttcttaaaactcct 11106634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 197
Target Start/End: Complemental strand, 30987203 - 30987097
Alignment:
Q  91 ttttatctcttggattaaaacaacataagcataaaacctcattaggaaaccattgaggatgttgatacaatgaagagaatcggagtagcaaacaaaatta 190  Q
    |||||| ||||| || |||||||||||| ||| | ||||| |  ||  | |||| ||||||||||||||||||||| |||| ||||||||||| |||| |    
T  30987203 ttttatatcttgaatcaaaacaacataaacatgatacctcctggggggatcattaaggatgttgatacaatgaagaaaatcagagtagcaaactaaatca 30987104  T
Q  191 gtaatac 197  Q
     ||||||    
T  30987103 ttaatac 30987097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 228
Target Start/End: Original strand, 4913900 - 4913977
Alignment:
Q  151 gttgatacaatgaagagaatcggagtagcaaacaaaattagtaatacccatttctttggccaacaggagacccttata 228  Q
    |||||| ||| |||||||||  |||||||||||||||| |   |||||||||||||| ||||| | |||||| |||||    
T  4913900 gttgatgcaaagaagagaattcgagtagcaaacaaaatcatcgatacccatttctttagccaatatgagaccattata 4913977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 91 - 326
Target Start/End: Original strand, 9083023 - 9083256
Alignment:
Q  91 ttttatctcttggattaaaacaacataagcataaaacctcattaggaa-accattgaggatgttgatacaatgaagagaatcggagtagcaaacaaaatt 189  Q
    |||||| |||||||||||||||  |||||||| |||||||||| ||   |||||||||||||||||||||||| | || ||| ||||||||||||||||     
T  9083023 ttttatatcttggattaaaacagaataagcatgaaacctcattggggggaccattgaggatgttgatacaatgtaaagcatcagagtagcaaacaaaatc 9083122  T
Q  190 agtaatacccatttctttggccaacaggagacccttatagatgacataaagttcaacatacaagatatcaggtgaattttagatgtatccagaaaagcct 289  Q
    |  ||||||||| | ||||||||||| |||||| ||||||||  |||| || ||| ||||||||  ||||| ||||||||  ||||||||||||||||||    
T  9083123 aagaatacccatatatttggccaacaagagacctttatagatagcatagagctcatcatacaag--atcagatgaattttgaatgtatccagaaaagcct 9083220  T
Q  290 gataagtaaaaaacctgcatcatttcttaaaattcct 326  Q
     | ||| |||||||||||||  |||||||||||||||    
T  9083221 aacaag-aaaaaacctgcatagtttcttaaaattcct 9083256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 85 - 237
Target Start/End: Original strand, 43706607 - 43706759
Alignment:
Q  85 taactgttttatctcttggattaaaacaacataagcataaaacctcattaggaaaccattgaggatgttgatacaatgaagagaatcggagtagcaaaca 184  Q
    ||||| |||||| ||||||||||||||  ||||| ||| |||||||||| ||  ||||| ||||||||||| |||||| | ||| || ||||| ||||||    
T  43706607 taactattttatgtcttggattaaaacggcataaacatgaaacctcattgggggaccatggaggatgttgagacaatgtaaagagtcagagtaacaaaca 43706706  T
Q  185 aaattagtaatacccatttctttggccaacaggagacccttatagatgacata 237  Q
    |||| |||||| || |||||||||||||||| |||||||||||| ||||||||    
T  43706707 aaatcagtaatgcctatttctttggccaacaagagacccttatatatgacata 43706759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 233 - 326
Target Start/End: Original strand, 43708934 - 43709026
Alignment:
Q  233 acataaagttcaacatacaagatatcaggtgaattttagatgtatccagaaaagcctgataagtaaaaaacctgcatcatttcttaaaattcct 326  Q
    ||||| || ||||||||||||||||||  ||||||||  ||||||| |||||| ||| | ||| ||||||  ||||| ||||||||||||||||    
T  43708934 acatagagctcaacatacaagatatcatttgaattttgaatgtatctagaaaatcctcacaag-aaaaaagatgcataatttcttaaaattcct 43709026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 91 - 201
Target Start/End: Complemental strand, 12734595 - 12734486
Alignment:
Q  91 ttttatctcttggattaaaacaacataagcataaaacctcattaggaaaccattgaggatgttgatacaatgaagagaatcggagtagcaaacaaaatta 190  Q
    |||||| ||||| || |||||| ||||| ||| |||||||||  || | ||||| |||||||||||||||||||||||||| ||||||||||| |||| |    
T  12734595 ttttatatcttgaatcaaaacagcataaacatgaaacctcatggggga-ccattaaggatgttgatacaatgaagagaatcagagtagcaaactaaatca 12734497  T
Q  191 gtaatacccat 201  Q
    | |||||||||    
T  12734496 gaaatacccat 12734486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 143 - 325
Target Start/End: Complemental strand, 35532888 - 35532707
Alignment:
Q  143 ttgaggatgttgatacaatgaagagaatcggagtagcaaacaaaattagtaatacccatttctttggccaacaggagacccttatagatgacataaagtt 242  Q
    |||| ||||||||||||||| | ||||||||  || ||||| |  || ||||||||||| ||||  | || ||  ||||| | |||||||||||| |  |    
T  35532888 ttgatgatgttgatacaatgtaaagaatcggcataacaaactaggttggtaatacccatgtcttcagtcagcaaaagaccatgatagatgacatataact 35532789  T
Q  243 caacatacaagatatcaggtgaattttagatgtatccagaaaagcctgataagtaaaaaacctgcatcatttcttaaaattcc 325  Q
    |||||||||| || ||||  ||||||   |||||||||||||||||||| |||| | | ||||||||||||||||||||||||    
T  35532788 caacatacaaaatgtcagaagaatttggaatgtatccagaaaagcctgacaagt-agacacctgcatcatttcttaaaattcc 35532707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 91 - 182
Target Start/End: Original strand, 17654871 - 17654961
Alignment:
Q  91 ttttatctcttggattaaaacaacataagcataaaacctcattaggaaaccattgaggatgttgatacaatgaagagaatcggagtagcaaa 182  Q
    |||||| ||||| || |||||| |||||  || |||||||||| |||| ||||| |||||||||||||||| ||||||||| ||||||||||    
T  17654871 ttttatatcttgaatcaaaacagcataaagatgaaacctcatttggaa-ccattaaggatgttgatacaataaagagaatcagagtagcaaa 17654961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 171
Target Start/End: Original strand, 41430547 - 41430633
Alignment:
Q  85 taactgttttatctcttggattaaaacaacataagcataaaacctcattaggaaaccattgaggatgttgatacaatgaagagaatc 171  Q
    ||||| |||||| ||||| ||  ||||| ||||| |||||||||||||   |  |||||| | ||||||||||||||||||||||||    
T  41430547 taactcttttatatcttgaatcgaaacatcataaacataaaacctcatggagggaccattaaagatgttgatacaatgaagagaatc 41430633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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