View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10761_low_16 (Length: 339)
Name: NF10761_low_16
Description: NF10761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10761_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 272; Significance: 1e-152; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 16 - 332
Target Start/End: Complemental strand, 21140479 - 21140163
Alignment:
| Q |
16 |
ataataactcaaactgtagaaattgtctaattattgtttggccttattttcaagttgatcctttacnnnnnnnggggaagatgacagttttattatactc |
115 |
Q |
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| T |
21140479 |
ataataactcaaaccgtagaaattgtctaattattgtttggccttattttcaagttgatcctttactttttttgggtaagatgacagttttatgatactc |
21140380 |
T |
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| Q |
116 |
ttggctctttcgattcgcgatagtttcagcttttaaatcagaatctcttaagtattgtatcactattaggaaggattgtatcacatattagtcctatctt |
215 |
Q |
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| T |
21140379 |
ttggctctttcgattcgcgatagtttcagcttttaaatcagaatcttttaagtattgtatcactattaggaaggattgtatcacatattattcctatctt |
21140280 |
T |
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| Q |
216 |
ttaagtgttttcttgatcctctttggcaatttgatcagtactcaatatttgcagtggtaacatcaacaacagtatcagtgtatcgtttactaagacttaa |
315 |
Q |
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| T |
21140279 |
ttaagtgttttcttgatccactttggcaatttgatcagtactcaatatttgcagtggtaacatcaacaacagtatcagtgtatcgtttactaagacttaa |
21140180 |
T |
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| Q |
316 |
tattcaatttcatctca |
332 |
Q |
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| T |
21140179 |
tattcaatttcatctca |
21140163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 35 - 161
Target Start/End: Complemental strand, 21233444 - 21233318
Alignment:
| Q |
35 |
aaattgtctaattattgtttggccttattttcaagttgatcctttacnnnnnnnggggaagatgacagttttattatactcttggctctttcgattcgcg |
134 |
Q |
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| T |
21233444 |
aaattgtataattattgtttggctttattttcaagttgatcctttacttttttgggggaagacgacagttttatgatactcttgtctcttacgattcacg |
21233345 |
T |
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| Q |
135 |
atagtttcagcttttaaatcagaatct |
161 |
Q |
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| T |
21233344 |
atagtttcaacttttatataagaatct |
21233318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 89 - 180
Target Start/End: Complemental strand, 33726640 - 33726550
Alignment:
| Q |
89 |
ggggaagatgacagttttattatactcttggctctttcgattcgcgatagtttcagcttttaaatcagaatctcttaagtattgtatcacta |
180 |
Q |
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|||| ||||| | ||||||| || ||||||||||||||||||| | |||| ||||||||||| ||||||||| ||||||||||||||||||| |
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| T |
33726640 |
gggggagatgtcggttttatgatcctcttggctctttcgattcacaataggttcagcttttatatcagaatc-cttaagtattgtatcacta |
33726550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 214 - 311
Target Start/End: Complemental strand, 21221874 - 21221771
Alignment:
| Q |
214 |
ttttaagtgttttcttgatcctctttggcaatttgatcagtactcaatatttgcagt------ggtaacatcaacaacagtatcagtgtatcgtttacta |
307 |
Q |
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|||| ||||||||||||||||||||||| |||||| |||| ||| | |||||||||| ||||||||||||| |||||||| |||||| ||||||| |
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| T |
21221874 |
ttttcagtgttttcttgatcctctttggtaatttgttcagcacttattatttgcagtggtagtggtaacatcaacatcagtatcaatgtatcatttacta |
21221775 |
T |
|
| Q |
308 |
agac |
311 |
Q |
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|||| |
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| T |
21221774 |
agac |
21221771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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