View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10761_low_17 (Length: 326)
Name: NF10761_low_17
Description: NF10761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10761_low_17 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 18 - 318
Target Start/End: Complemental strand, 47729117 - 47728817
Alignment:
| Q |
18 |
tgaacaacatatatgcaattgaaggtcaattcattgatgaaatagacaatagcaaaatgagtccttttaaggctaagcaccctaacgaggcacacatatt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
47729117 |
tgaacaacatatatgcaattgaaggtcaattcattgatgaaatagacaatagcaaaatgagtccttttaaggctaagcaccctaatgaggcacacatatt |
47729018 |
T |
|
| Q |
118 |
tttccttccttttagtgttgcaaatgtggttcaatatgtttataagccaattatgtccaaaaaggatttcaaccgtgacagacttcatagaatggtggag |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47729017 |
tttccttccttttagtgttgcaaatgtggttcaatatgtttataagccaattatgtccaaaaaggatttcaaccgtgacagacttcatagaatggtggag |
47728918 |
T |
|
| Q |
218 |
gattatgtaaatgttgtggctcataagtatccttattggaatagaagcaatggtgctgaccattttctcctctcttgtcatgactgggtaattttcttct |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47728917 |
gattatgtaaatgttgtggctcataagtatccttattggaatagaagcaatggtgctgaccattttctcctctcttgtcatgactgggtaattttcttct |
47728818 |
T |
|
| Q |
318 |
c |
318 |
Q |
| |
|
| |
|
|
| T |
47728817 |
c |
47728817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 242 - 307
Target Start/End: Complemental strand, 263600 - 263535
Alignment:
| Q |
242 |
aagtatccttattggaatagaagcaatggtgctgaccattttctcctctcttgtcatgactgggta |
307 |
Q |
| |
|
||||||||||||||||| |||||| | ||||||||||||||||| || || || ||||| |||||| |
|
|
| T |
263600 |
aagtatccttattggaacagaagccaaggtgctgaccattttctactttcatgccatgattgggta |
263535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University