View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10761_low_18 (Length: 314)

Name: NF10761_low_18
Description: NF10761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10761_low_18
NF10761_low_18
[»] chr7 (6 HSPs)
chr7 (1-298)||(6963124-6963422)
chr7 (156-280)||(3762806-3762931)
chr7 (180-293)||(20905509-20905622)
chr7 (5-114)||(5733312-5733421)
chr7 (157-226)||(23196334-23196403)
chr7 (161-261)||(47062780-47062880)
[»] chr1 (8 HSPs)
chr1 (1-132)||(25139930-25140061)
chr1 (1-114)||(40090841-40090954)
chr1 (180-278)||(32105752-32105850)
chr1 (180-261)||(38691023-38691104)
chr1 (186-261)||(25232130-25232205)
chr1 (41-115)||(10164427-10164501)
chr1 (161-267)||(34328917-34329023)
chr1 (180-261)||(19497548-19497629)
[»] chr6 (8 HSPs)
chr6 (155-283)||(34110760-34110888)
chr6 (161-280)||(26684067-26684186)
chr6 (161-263)||(28607717-28607819)
chr6 (43-125)||(31176734-31176816)
chr6 (180-255)||(21357434-21357509)
chr6 (180-255)||(23961416-23961491)
chr6 (63-125)||(31197338-31197400)
chr6 (1-78)||(253392-253469)
[»] chr2 (8 HSPs)
chr2 (155-283)||(24683948-24684076)
chr2 (190-265)||(25618180-25618255)
chr2 (161-283)||(25855418-25855541)
chr2 (1-111)||(25614360-25614470)
chr2 (184-283)||(21536082-21536181)
chr2 (238-280)||(28422591-28422633)
chr2 (161-261)||(41007041-41007141)
chr2 (161-261)||(43948348-43948448)
[»] chr8 (2 HSPs)
chr8 (166-283)||(17317357-17317474)
chr8 (166-283)||(17340905-17341022)
[»] chr3 (6 HSPs)
chr3 (179-283)||(8118487-8118591)
chr3 (155-283)||(21543363-21543490)
chr3 (180-261)||(77104-77185)
chr3 (179-283)||(25056003-25056106)
chr3 (238-280)||(4511026-4511068)
chr3 (1-34)||(39965852-39965885)
[»] chr4 (6 HSPs)
chr4 (156-282)||(13896809-13896935)
chr4 (155-265)||(6183579-6183688)
chr4 (214-256)||(3342603-3342645)
chr4 (161-283)||(20970577-20970698)
chr4 (180-261)||(17238912-17238993)
chr4 (161-261)||(51643069-51643169)
[»] scaffold0111 (1 HSPs)
scaffold0111 (41-133)||(48139-48231)
[»] scaffold0542 (1 HSPs)
scaffold0542 (184-265)||(1155-1235)
[»] chr5 (4 HSPs)
chr5 (1-111)||(16439569-16439679)
chr5 (217-265)||(12340207-12340255)
chr5 (161-208)||(12338785-12338832)
chr5 (161-261)||(4198968-4199068)
[»] scaffold0049 (1 HSPs)
scaffold0049 (1-126)||(37764-37889)


Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-154; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 6963124 - 6963422
Alignment:
Q  1 ttgtaataagttgcaacgatgtgacacatgtccaggagcatcaaccacttatcatcaaatgtaataccactactattttgaggaggatgcaaatcattca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  6963124 ttgtaataagttgcaacgatgtgacacatgtccaggagcatcaaccacttatcatcaaatgcaataccgctactattttgaggaggatgcaaatcattca 6963223  T
Q  101 agatatagttaaaataatcatcactcccatatatctatgtataggttacgctatttgctaaaatatttcttcaattttccatgagccctttcaactctgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  6963224 agatatagttaaaataatcatcactcccatatatctatgtataggttacgctatttgctaaaatatttcttcaattttccatgggccctttccactctgt 6963323  T
Q  201 tggtggttatgcagccaagatgcaagacactgttttaccatgccctcactattttttccttaacagtatccaaaatggtac-ttcaacatagttgatga 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  6963324 tggtggttatgcagccaagatgcaagacactgttttaccatgccctcactattttttccttaacagtatccaaaatggtactttcaacatagttgatga 6963422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 156 - 280
Target Start/End: Complemental strand, 3762931 - 3762806
Alignment:
Q  156 tgctaaaatatttcttcaattttccatgagccctttcaactctgttggtggttatgcagccaagatgcaagacactgttttaccatgccctcactatt-t 254  Q
    |||| ||||||||||||||  | |||||||||| | ||||| ||||||||||| ||||||||||||||||||||  || | ||||||||| ||||||| |    
T  3762931 tgctcaaatatttcttcaacctaccatgagcccctacaactgtgttggtggttctgcagccaagatgcaagacatggtctgaccatgcccccactatttt 3762832  T
Q  255 tttccttaacagtatccaaaatggta 280  Q
    ||||||||||| ||||||||||||||    
T  3762831 tttccttaacaatatccaaaatggta 3762806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 180 - 293
Target Start/End: Original strand, 20905509 - 20905622
Alignment:
Q  180 catgagccctttcaactctgttggtggttatgcagccaagatgcaagacactgttttaccatgccctcactattttttccttaacagtatccaaaatggt 279  Q
    ||||||||||| |||||| |||||||||| |||||| ||||| |||||||  || |  ||||||||||| |||||| |||| || ||| ||||||||||     
T  20905509 catgagccctt-caactccgttggtggttttgcagctaagattcaagacatggtatgtccatgccctcaatattttatcctcaaaagtttccaaaatggc 20905607  T
Q  280 acttc-aacatagtt 293  Q
    ||||| |||||||||    
T  20905608 acttctaacatagtt 20905622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 114
Target Start/End: Original strand, 5733312 - 5733421
Alignment:
Q  5 aataagttgcaacgatgtgacacatgtccaggagcatcaaccacttatcatcaaatgtaataccactactattttgaggaggatgcaaatcattcaagat 104  Q
    ||||||||||||||||||||| | ||||||  |   ||||||||||| || ||| || |||||||| |||| |||  ||||||||||| ||||| |||||    
T  5733312 aataagttgcaacgatgtgacccctgtccaaaaatgtcaaccacttaccaacaagtgcaataccaccactacttttgggaggatgcaagtcatttaagat 5733411  T
Q  105 atagttaaaa 114  Q
     |||||||||    
T  5733412 gtagttaaaa 5733421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 226
Target Start/End: Original strand, 23196334 - 23196403
Alignment:
Q  157 gctaaaatatttcttcaattttccatgagccctttcaactctgttggtggttatgcagccaagatgcaag 226  Q
    |||||||||||||||||||||| || |||| | ||||||||||||||||||| |  || |||||||||||    
T  23196334 gctaaaatatttcttcaatttttcacgagcaccttcaactctgttggtggttctatagtcaagatgcaag 23196403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 261
Target Start/End: Complemental strand, 47062880 - 47062780
Alignment:
Q  161 aaatatttcttcaattttccatgagccctttcaactctgttggtggttatgcagccaagatgcaagacactgttttaccatgccctcactattttttcct 260  Q
    |||||||||||||||    ||||||||  ||| || |||||||||||  |||| ||||||||||| |||  ||||  |||||||||||||||||| ||||    
T  47062880 aaatatttcttcaataaagcatgagccgattcgaccctgttggtggtcctgcaaccaagatgcaacacatggtttgtccatgccctcactattttctcct 47062781  T
Q  261 t 261  Q
    |    
T  47062780 t 47062780  T

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Target: chr1 (Bit Score: 76; Significance: 4e-35; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 25140061 - 25139930
Alignment:
Q  1 ttgtaataagttgcaacgatgtgacacatgtccaggagcatcaaccacttatcatcaaatgtaataccactactattttgaggaggatgcaaatcattca 100  Q
    ||||||||||||||||||||||||  ||||||| ||||| ||||||||||||||||||||| || |||| |||||||||| |||||||||||  ||||||    
T  25140061 ttgtaataagttgcaacgatgtgaatcatgtccgggagcgtcaaccacttatcatcaaatgcaacaccattactattttggggaggatgcaaggcattca 25139962  T
Q  101 agatatagttaaaataatcatcactcccatat 132  Q
    ||||||||||||||  ||| | ||||||||||    
T  25139961 agatatagttaaaacgatcctaactcccatat 25139930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 40090954 - 40090841
Alignment:
Q  1 ttgtaataagttgcaacgatgtgacacatgtccaggagcatcaaccacttatcatcaaatgtaataccactactattttgaggaggatgcaaatcattca 100  Q
    |||||| |||||||||||||||||| ||||| | | | | ||||||||||||| || |||| ||| |||||||||||||| ||||| ||||||  |||||    
T  40090954 ttgtaacaagttgcaacgatgtgacccatgttcggtaacgtcaaccacttatcttctaatgcaattccactactattttggggagggtgcaaacaattca 40090855  T
Q  101 agatatagttaaaa 114  Q
    ||||||||||||||    
T  40090854 agatatagttaaaa 40090841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 278
Target Start/End: Original strand, 32105752 - 32105850
Alignment:
Q  180 catgagccctttcaactctgttggtggttatgcagccaagatgcaagacactgttttaccatgccctcactattttttccttaacagtatccaaaatgg 278  Q
    ||||||||| ||||||||||||||||||| || | |||||||||||||||   | |  |||||||||||||||||  |||||||||  |||||||||||    
T  32105752 catgagccccttcaactctgttggtggttctgtatccaagatgcaagacatgatatgtccatgccctcactatttcgtccttaacaacatccaaaatgg 32105850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 261
Target Start/End: Original strand, 38691023 - 38691104
Alignment:
Q  180 catgagccctttcaactctgttggtggttatgcagccaagatgcaagacactgttttaccatgccctcactattttttcctt 261  Q
    ||||||||  ||| ||||||||||||||  |||| ||||||||||| |||  || |  ||||||||||||||||||||||||    
T  38691023 catgagcctattctactctgttggtggtcctgcaaccaagatgcaacacatggtctgtccatgccctcactattttttcctt 38691104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 186 - 261
Target Start/End: Complemental strand, 25232205 - 25232130
Alignment:
Q  186 ccctttcaactctgttggtggttatgcagccaagatgcaagacactgttttaccatgccctcactattttttcctt 261  Q
    |||||| |||| | ||||||||| |||||||| |||||||||||| || |  |||| ||||||||||||| |||||    
T  25232205 ccctttaaactttattggtggttttgcagccaggatgcaagacacggtctgtccattccctcactattttatcctt 25232130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 115
Target Start/End: Complemental strand, 10164501 - 10164427
Alignment:
Q  41 tcaaccacttatcatcaaatgtaataccactactattttgaggaggatgcaaatcattcaagatatagttaaaat 115  Q
    |||||||||||||  ||| || |||| || |||||||||  |||||||||||| |||| ||||| ||||||||||    
T  10164501 tcaaccacttatctacaagtgcaatatcaatactatttttgggaggatgcaaaccatttaagatgtagttaaaat 10164427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 267
Target Start/End: Original strand, 34328917 - 34329023
Alignment:
Q  161 aaatatttcttcaattttccatgagccctttcaactctgttggtggttatgcagccaagatgcaagacactgttttaccatgccctcactattttttcct 260  Q
    |||||||| ||||| ||||||||| ||  ||||||  ||||||||||| |||| || |||||||||||  | |||   ||||||||||  | ||||||||    
T  34328917 aaatattttttcaactttccatgaaccgattcaacaatgttggtggttttgcatcctagatgcaagactttatttgttcatgccctcataaatttttcct 34329016  T
Q  261 taacagt 267  Q
    |||||||    
T  34329017 taacagt 34329023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 261
Target Start/End: Original strand, 19497548 - 19497629
Alignment:
Q  180 catgagccctttcaactctgttggtggttatgcagccaagatgcaagacactgttttaccatgccctcactattttttcctt 261  Q
    ||||||||  ||| || |||||||||||| |||  ||||||||||| |||  ||||  |||||||||||||||||| |||||    
T  19497548 catgagcctattctaccctgttggtggttctgccaccaagatgcaacacatggtttgtccatgccctcactattttctcctt 19497629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 6e-31; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 155 - 283
Target Start/End: Original strand, 34110760 - 34110888
Alignment:
Q  155 ttgctaaaatatttcttcaattttccatgagccctttcaactctgttggtggttatgcagccaagatgcaagacactgttttaccatgccctcactattt 254  Q
    ||||| ||||||||||||||||  ||||||| |||||||||||| ||||||||| || |||||||||||||||||| || |  ||||||| ||||| |||    
T  34110760 ttgctcaaatatttcttcaattcaccatgagtcctttcaactctattggtggttttgtagccaagatgcaagacacggtctgcccatgccttcactgttt 34110859  T
Q  255 tttccttaacagtatccaaaatggtactt 283  Q
    ||| |||||| ||||||||||||||||||    
T  34110860 ttttcttaacggtatccaaaatggtactt 34110888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 161 - 280
Target Start/End: Original strand, 26684067 - 26684186
Alignment:
Q  161 aaatatttcttcaattttccatgagccctttcaactctgttggtggttatgcagccaagatgcaagacactgttttaccatgccctcactattttttcct 260  Q
    ||||||| ||||| | | |||||||||| |||||||||||| |||||  |||| |||||||| || |||  || |  ||||||||||| |||||| ||||    
T  26684067 aaatattccttcactctaccatgagccccttcaactctgttcgtggtcctgcacccaagatgtaacacaaggtctgtccatgccctcattattttgtcct 26684166  T
Q  261 taacagtatccaaaatggta 280  Q
    ||||||| ||||||||||||    
T  26684167 taacagtgtccaaaatggta 26684186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 263
Target Start/End: Complemental strand, 28607819 - 28607717
Alignment:
Q  161 aaatatttcttcaattttccatgagccctttcaactctgttggtggttatgcagccaagatgcaagacactgttttaccatgccctcactattttttcct 260  Q
    |||||||| ||||| ||||||||||||| ||||| |||||| |||||| ||  ||||||||| || |||  ||||  |||||||||||  | ||||||||    
T  28607819 aaatatttattcaactttccatgagccccttcaattctgttagtggttctgttgccaagatgaaaaacatggtttgtccatgccctcataaatttttcct 28607720  T
Q  261 taa 263  Q
    |||    
T  28607719 taa 28607717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 125
Target Start/End: Complemental strand, 31176816 - 31176734
Alignment:
Q  43 aaccacttatcatcaaatgtaataccactactattttgaggaggatgcaaatcattcaagatatagttaaaataatcatcact 125  Q
    ||||||||||| |||| |  |||||||||||||||||   || |||||||  ||||||||||||||||||||  |||||||||    
T  31176816 aaccacttatcttcaagtacaataccactactattttcgagatgatgcaatccattcaagatatagttaaaacgatcatcact 31176734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 255
Target Start/End: Original strand, 21357434 - 21357509
Alignment:
Q  180 catgagccctttcaactctgttggtggttatgcagccaagatgcaagacactgttttaccatgccctcactatttt 255  Q
    ||||||||  ||| || |||||||||||| |||||||||||||||| |||  || |  ||||||||||||||||||    
T  21357434 catgagccgattctaccctgttggtggttctgcagccaagatgcaacacatggtatgtccatgccctcactatttt 21357509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 255
Target Start/End: Original strand, 23961416 - 23961491
Alignment:
Q  180 catgagccctttcaactctgttggtggttatgcagccaagatgcaagacactgttttaccatgccctcactatttt 255  Q
    ||||||||  ||| || |||||||||||| |||||||||||||||| |||  || |  ||||||||||||||||||    
T  23961416 catgagccgattctaccctgttggtggttctgcagccaagatgcaacacatggtatgtccatgccctcactatttt 23961491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 125
Target Start/End: Complemental strand, 31197400 - 31197338
Alignment:
Q  63 aataccactactattttgaggaggatgcaaatcattcaagatatagttaaaataatcatcact 125  Q
    ||||| |||||||||||  ||| |||||||  ||||||||||||||||||||  |||||||||    
T  31197400 aatacaactactattttcgggatgatgcaatccattcaagatatagttaaaacgatcatcact 31197338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 253392 - 253469
Alignment:
Q  1 ttgtaataagttgcaacgatgtgacacatgtccaggagcatcaaccacttatcatcaaatgtaataccactactattt 78  Q
    ||||||||| ||||||| ||||| | ||||| | | | |||||||||||||||| ||| || |||||||| |||||||    
T  253392 ttgtaataatttgcaacaatgtgtcccatgttcggaaacatcaaccacttatcaacaagtgcaataccaccactattt 253469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 6e-31; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 155 - 283
Target Start/End: Complemental strand, 24684076 - 24683948
Alignment:
Q  155 ttgctaaaatatttcttcaattttccatgagccctttcaactctgttggtggttatgcagccaagatgcaagacactgttttaccatgccctcactattt 254  Q
    ||||| ||||||||||||||||| |||||||||| ||||||| |||| |||||| |||| | |||||||||||||| || |  |||||||||||||||||    
T  24684076 ttgctcaaatatttcttcaatttaccatgagccccttcaactttgtttgtggttctgcaactaagatgcaagacacggtgtgtccatgccctcactattt 24683977  T
Q  255 tttccttaacagtatccaaaatggtactt 283  Q
    ||||||||| |||||  ||||||||||||    
T  24683976 tttccttaatagtataaaaaatggtactt 24683948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 190 - 265
Target Start/End: Original strand, 25618180 - 25618255
Alignment:
Q  190 ttcaactctgttggtggttatgcagccaagatgcaagacactgttttaccatgccctcactattttttccttaaca 265  Q
    |||||||||||||||||||||||||||||||||||| |||  || || |||||||||||||||||| |||||||||    
T  25618180 ttcaactctgttggtggttatgcagccaagatgcaacacatggtctttccatgccctcactattttatccttaaca 25618255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 283
Target Start/End: Original strand, 25855418 - 25855541
Alignment:
Q  161 aaatatttcttcaattttccatgagccctttcaactctgttggtggttatgcagccaagatgcaagacactgttttaccatgccctcacta-ttttttcc 259  Q
    ||||||||||||| | |  ||||| ||| ||||||||||||||||||| |||| |||||||| || |||| || |  | ||||| |||||| ||||||||    
T  25855418 aaatatttcttcactctgtcatgatccccttcaactctgttggtggttctgcacccaagatgaaacacacggtctgtctatgccttcactatttttttcc 25855517  T
Q  260 ttaacagtatccaaaatggtactt 283  Q
    |||||||| |||||||||||||||    
T  25855518 ttaacagtgtccaaaatggtactt 25855541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 25614360 - 25614470
Alignment:
Q  1 ttgtaataagttgcaacgatgtgacacatgtccaggagcatcaaccacttatcatcaaatgtaataccactactattttgaggaggatgcaaatcattca 100  Q
    ||||||||| |||||||||| || | ||||||||| ||| ||||| |||||| | ||| || |||||||| |||||||   ||||||||||| ||||| |    
T  25614360 ttgtaataatttgcaacgatttgtcccatgtccagaagcgtcaacaacttattaacaagtgcaataccaccactatttgtgggaggatgcaagtcattta 25614459  T
Q  101 agatatagtta 111  Q
    |||||||||||    
T  25614460 agatatagtta 25614470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 283
Target Start/End: Complemental strand, 21536181 - 21536082
Alignment:
Q  184 agccctttcaactctgttggtggttatgcagccaagatgcaagacactgttttaccatgccctcactattttttccttaacagtatccaaaatggtactt 283  Q
    ||||| ||||||| ||||||||||| |  | ||||||||||| |||| |  |  |||| |||||||||| |||||||||||||| | |||||||||||||    
T  21536181 agccccttcaactttgttggtggttcttaacccaagatgcaacacacggaatgtccataccctcactatattttccttaacagtgttcaaaatggtactt 21536082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 280
Target Start/End: Original strand, 28422591 - 28422633
Alignment:
Q  238 ccatgccctcactattttttccttaacagtatccaaaatggta 280  Q
    |||||||||||||||||| ||||| ||||| ||||||||||||    
T  28422591 ccatgccctcactattttgtccttcacagtgtccaaaatggta 28422633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 261
Target Start/End: Original strand, 41007041 - 41007141
Alignment:
Q  161 aaatatttcttcaattttccatgagccctttcaactctgttggtggttatgcagccaagatgcaagacactgttttaccatgccctcactattttttcct 260  Q
    |||||||||||||||    ||||||||  |||||| ||||||||| |  |||| ||||||||||| |||  || |  |||||||||||||||||| ||||    
T  41007041 aaatatttcttcaataaagcatgagccgattcaaccctgttggtgatcctgcaaccaagatgcaacacatggtctgtccatgccctcactattttctcct 41007140  T
Q  261 t 261  Q
    |    
T  41007141 t 41007141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 261
Target Start/End: Original strand, 43948348 - 43948448
Alignment:
Q  161 aaatatttcttcaattttccatgagccctttcaactctgttggtggttatgcagccaagatgcaagacactgttttaccatgccctcactattttttcct 260  Q
    |||||||||||||||    ||||||||  ||| || |||||||||||  |||| ||||||||||| |||  || |  |||||||||||||||||| ||||    
T  43948348 aaatatttcttcaataaagcatgagccgattcgaccctgttggtggtcctgcaaccaagatgcaacacatggtctgtccatgccctcactattttctcct 43948447  T
Q  261 t 261  Q
    |    
T  43948448 t 43948448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 166 - 283
Target Start/End: Complemental strand, 17317474 - 17317357
Alignment:
Q  166 tttcttcaattttccatgagccctttcaactctgttggtggttatgcagccaagatgcaagacactgttttaccatgccctcactattttttccttaaca 265  Q
    |||||||| | | ||||||||||||| | || |||||||| || |||| ||||||||||| |||| || |  ||||||||||||||||||||||||||||    
T  17317474 tttcttcactctaccatgagcccttttatctttgttggtgattctgcacccaagatgcaacacacggtatgtccatgccctcactattttttccttaaca 17317375  T
Q  266 gtatccaaaatggtactt 283  Q
    || |||||||||||||||    
T  17317374 gtgtccaaaatggtactt 17317357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 166 - 283
Target Start/End: Complemental strand, 17341022 - 17340905
Alignment:
Q  166 tttcttcaattttccatgagccctttcaactctgttggtggttatgcagccaagatgcaagacactgttttaccatgccctcactattttttccttaaca 265  Q
    |||||||| | | |||||||||| || |||||||||||||||| |||| ||||||| ||| |||| || |  || ||||||||||||| |||||||||||    
T  17341022 tttcttcactctaccatgagcccctttaactctgttggtggttctgcacccaagatacaacacacggtatgtccttgccctcactattctttccttaaca 17340923  T
Q  266 gtatccaaaatggtactt 283  Q
    || |||||||||||||||    
T  17340922 gtgtccaaaatggtactt 17340905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 8e-24; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 179 - 283
Target Start/End: Complemental strand, 8118591 - 8118487
Alignment:
Q  179 ccatgagccctttcaactctgttggtggttatgcagccaagatgcaagacactgttttaccatgccctcactattttttccttaacagtatccaaaatgg 278  Q
    |||||||||| ||||||| ||||||||||  |||| ||||||||||| |||  || |  |||||||||||||||||||||||||||||| ||||||||||    
T  8118591 ccatgagccccttcaactttgttggtggtcctgcatccaagatgcaatacaaggtatgcccatgccctcactattttttccttaacagtgtccaaaatgg 8118492  T
Q  279 tactt 283  Q
    |||||    
T  8118491 tactt 8118487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 155 - 283
Target Start/End: Complemental strand, 21543490 - 21543363
Alignment:
Q  155 ttgctaaaatatttcttcaattttccatgagccctttcaactctgttggtggttatgcagccaagatgcaagacactgttttaccatgccctcactattt 254  Q
    ||||| |||| |||||||||||| |||||| ||  |||||||||||||||| || |||||||||||||| |||||| || |   ||||||||||||||||    
T  21543490 ttgctcaaatctttcttcaatttaccatgatcctcttcaactctgttggtg-ttctgcagccaagatgctagacacggtatgtgcatgccctcactattt 21543392  T
Q  255 tttccttaacagtatccaaaatggtactt 283  Q
    || | |||||| |||||||||||||||||    
T  21543391 ttccattaacaatatccaaaatggtactt 21543363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 261
Target Start/End: Original strand, 77104 - 77185
Alignment:
Q  180 catgagccctttcaactctgttggtggttatgcagccaagatgcaagacactgttttaccatgccctcactattttttcctt 261  Q
    ||||||||  ||| || |||||||||||| |||| ||||||||||| |||| || |  |||||||||||||||||| |||||    
T  77104 catgagccgattctaccctgttggtggttctgcaaccaagatgcaacacacggtatgtccatgccctcactattttctcctt 77185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 283
Target Start/End: Original strand, 25056003 - 25056106
Alignment:
Q  179 ccatgagccctttcaactctgttggtggttatgcagccaagatgcaagacactgttttaccatgccctcactattttttccttaacagtatccaaaatgg 278  Q
    |||||||||| ||| |||||||||||| |  ||||  ||||||| ||  ||  ||||  |||||||||| ||||||| ||||||||||| ||||||||||    
T  25056003 ccatgagccccttcgactctgttggtgatcctgcactcaagatgtaacgcaaggtttgtccatgccctcgctatttt-tccttaacagtgtccaaaatgg 25056101  T
Q  279 tactt 283  Q
    |||||    
T  25056102 tactt 25056106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 280
Target Start/End: Complemental strand, 4511068 - 4511026
Alignment:
Q  238 ccatgccctcactattttttccttaacagtatccaaaatggta 280  Q
    |||||| ||||||||||| ||||| ||||||||||||||||||    
T  4511068 ccatgctctcactattttgtccttcacagtatccaaaatggta 4511026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 39965852 - 39965885
Alignment:
Q  1 ttgtaataagttgcaacgatgtgacacatgtcca 34  Q
    ||||||||||||||||||||||||| ||||||||    
T  39965852 ttgtaataagttgcaacgatgtgacccatgtcca 39965885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 156 - 282
Target Start/End: Original strand, 13896809 - 13896935
Alignment:
Q  156 tgctaaaatatttcttcaattttccatgagccctttcaactctgttggtggttatgcagccaagatgcaagacactgttttaccatgccctcactatttt 255  Q
    |||| ||||||||||||| | |  | ||||||| ||||||||||||||||||| |||||||||||||||| |||| || |  ||||||| |||| |||||    
T  13896809 tgctcaaatatttcttcactctagcgtgagccccttcaactctgttggtggttctgcagccaagatgcaacacacggtatgtccatgccttcacaatttt 13896908  T
Q  256 ttccttaacagtatccaaaatggtact 282  Q
    ||||||| |||| || ||||| |||||    
T  13896909 ttccttatcagtgtctaaaattgtact 13896935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 155 - 265
Target Start/End: Complemental strand, 6183688 - 6183579
Alignment:
Q  155 ttgctaaaatatttcttcaattttccatgagccctttcaactctgttggtggttatgcagccaagatgcaagacactgttttaccatgccctcactattt 254  Q
    ||||| ||||||||||||| | | ||||||||| ||||||||||||| |||||| || | |||||||||||||||| ||||   |||||| |||||||||    
T  6183688 ttgctcaaatatttcttcactataccatgagcc-tttcaactctgttagtggttctgtaaccaagatgcaagacacagtttgttcatgccgtcactattt 6183590  T
Q  255 tttccttaaca 265  Q
    | |||| ||||    
T  6183589 tctcctcaaca 6183579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 256
Target Start/End: Complemental strand, 3342645 - 3342603
Alignment:
Q  214 gccaagatgcaagacactgttttaccatgccctcactattttt 256  Q
    ||||||||||||||||||||||| |||||||||||| ||||||    
T  3342645 gccaagatgcaagacactgtttttccatgccctcacaattttt 3342603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 283
Target Start/End: Original strand, 20970577 - 20970698
Alignment:
Q  161 aaatatttcttcaattttccatgagccctttcaactctgttggtggttatgcagccaagatgcaagacactgttttaccatgccctcactattttttcct 260  Q
    ||||||| ||||| | | |||||||||| ||||||||| ||||||||  |||| ||||||||||| |||  || |  ||||| |||||||||||| ||||    
T  20970577 aaatattccttcactataccatgagccccttcaactctattggtggtcctgcacccaagatgcaacacaaggtatgtccatg-cctcactattttgtcct 20970675  T
Q  261 taacagtatccaaaatggtactt 283  Q
     ||||   | |||||||||||||    
T  20970676 caacatcgttcaaaatggtactt 20970698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 261
Target Start/End: Original strand, 17238912 - 17238993
Alignment:
Q  180 catgagccctttcaactctgttggtggttatgcagccaagatgcaagacactgttttaccatgccctcactattttttcctt 261  Q
    ||||||||  ||| || |||||||||||| |||| ||||||||||| |||  || |  |||||||||||||||||| |||||    
T  17238912 catgagccgattctaccctgttggtggttctgcaaccaagatgcaacacatggtctgtccatgccctcactattttctcctt 17238993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 261
Target Start/End: Original strand, 51643069 - 51643169
Alignment:
Q  161 aaatatttcttcaattttccatgagccctttcaactctgttggtggttatgcagccaagatgcaagacactgttttaccatgccctcactattttttcct 260  Q
    |||||||||||||||    |||||| |  ||| ||||||||||||||  |||| ||||||||||| |||  || |  |||||||||||||||||| ||||    
T  51643069 aaatatttcttcaataaagcatgagtcgattctactctgttggtggtcctgcaaccaagatgcaacacatggtctgtccatgccctcactattttctcct 51643168  T
Q  261 t 261  Q
    |    
T  51643169 t 51643169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 41 - 133
Target Start/End: Original strand, 48139 - 48231
Alignment:
Q  41 tcaaccacttatcatcaaatgtaataccactactattttgaggaggatgcaaatcattcaagatatagttaaaataatcatcactcccatata 133  Q
    ||||||||||||| ||||||| ||| | || ||||||||| ||||| | |||| ||||||||||||||||||||| || ||||||||||||||    
T  48139 tcaaccacttatcttcaaatgaaattctacaactattttggggagggtacaaaccattcaagatatagttaaaatgataatcactcccatata 48231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0542 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0542
Description:

Target: scaffold0542; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 184 - 265
Target Start/End: Original strand, 1155 - 1235
Alignment:
Q  184 agccctttcaactctgttggtggttatgcagccaagatgcaagacactgttttaccatgccctcactattttttccttaaca 265  Q
    ||||| |||||||||||||||||||  |||||||||||||||||||  || |  |||||||||||||| |||||||||||||    
T  1155 agccccttcaactctgttggtggttcggcagccaagatgcaagacatggtctgtccatgccctcacta-tttttccttaaca 1235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 16439679 - 16439569
Alignment:
Q  1 ttgtaataagttgcaacgatgtgacacatgtccaggagcatcaaccacttatcatcaaatgtaataccactactattttgaggaggatgcaaatcattca 100  Q
    ||||||||| ||||||||||||| | |||| || | ||| |||||||||||||| ||| || |||||||| |||||||   |||||||| || ||||| |    
T  16439679 ttgtaataatttgcaacgatgtgtcccatgaccggaagcgtcaaccacttatcaacaagtgcaataccaccactatttgtgggaggatgtaagtcattta 16439580  T
Q  101 agatatagtta 111  Q
    | || ||||||    
T  16439579 aaatgtagtta 16439569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 265
Target Start/End: Original strand, 12340207 - 12340255
Alignment:
Q  217 aagatgcaagacactgttttaccatgccctcactattttttccttaaca 265  Q
    |||||||||||||| ||  | ||||||||||||||||||||||||||||    
T  12340207 aagatgcaagacacggtccttccatgccctcactattttttccttaaca 12340255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 161 - 208
Target Start/End: Original strand, 12338785 - 12338832
Alignment:
Q  161 aaatatttcttcaattttccatgagccctttcaactctgttggtggtt 208  Q
    |||||||||||||||||||||||||||| ||||| ||| ||| |||||    
T  12338785 aaatatttcttcaattttccatgagccccttcaaatctattgttggtt 12338832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 261
Target Start/End: Original strand, 4198968 - 4199068
Alignment:
Q  161 aaatatttcttcaattttccatgagccctttcaactctgttggtggttatgcagccaagatgcaagacactgttttaccatgccctcactattttttcct 260  Q
    |||||||||||||||    ||||||||  ||| || |||||||||||  |||| ||||||||||| |||  || |  |||||||||||||||||| ||||    
T  4198968 aaatatttcttcaataaagcatgagccgattcgaccctgttggtggtcctgcaaccaagatgcaacacatggtctgtccatgccctcactattttctcct 4199067  T
Q  261 t 261  Q
    |    
T  4199068 t 4199068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 37889 - 37764
Alignment:
Q  1 ttgtaataagttgcaacgatgtgacacatgtccaggagcatcaaccacttatcatcaaatgtaataccactactattttgaggaggatgcaaatcattca 100  Q
    ||||||| ||||||||||||||| | ||| ||| | |   |||||||||||||   || || |||||||||||||||||   ||| ||||||  ||||||    
T  37889 ttgtaatgagttgcaacgatgtggcccatatccggcaatgtcaaccacttatctagaagtgcaataccactactattttcgtgagtatgcaatccattca 37790  T
Q  101 agatatagttaaaataatcatcactc 126  Q
    | ||||||||| ||  ||||||||||    
T  37789 aaatatagttataacgatcatcactc 37764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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