View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10761_low_26 (Length: 235)

Name: NF10761_low_26
Description: NF10761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10761_low_26
NF10761_low_26
[»] chr2 (2 HSPs)
chr2 (18-220)||(30934602-30934804)
chr2 (18-98)||(40070659-40070740)
[»] chr1 (3 HSPs)
chr1 (89-220)||(22590269-22590401)
chr1 (18-64)||(22590390-22590436)
chr1 (56-99)||(19722163-19722206)
[»] chr8 (2 HSPs)
chr8 (20-100)||(28952159-28952240)
chr8 (56-101)||(15739809-15739854)
[»] chr5 (5 HSPs)
chr5 (20-87)||(22129032-22129099)
chr5 (18-85)||(23737569-23737636)
chr5 (20-87)||(5023608-5023675)
chr5 (40-98)||(19906393-19906451)
chr5 (56-87)||(34369780-34369811)
[»] chr4 (2 HSPs)
chr4 (21-87)||(7622208-7622274)
chr4 (18-98)||(34742426-34742506)
[»] scaffold0179 (2 HSPs)
scaffold0179 (25-94)||(11246-11315)
scaffold0179 (27-94)||(23800-23867)
[»] chr7 (1 HSPs)
chr7 (18-87)||(22691023-22691092)
[»] chr6 (1 HSPs)
chr6 (19-79)||(19830980-19831040)
[»] scaffold0029 (1 HSPs)
scaffold0029 (56-101)||(60481-60526)
[»] chr3 (1 HSPs)
chr3 (18-98)||(21530237-21530317)
[»] scaffold0014 (1 HSPs)
scaffold0014 (59-101)||(17949-17991)


Alignment Details
Target: chr2 (Bit Score: 131; Significance: 4e-68; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 30934602 - 30934804
Alignment:
Q  18 gcatattgccagggaataatgtcaggagcaagaatccttggcaaatttgccaggagctatgccagggaaacccctggcaaattgaaatggaacgctttta 117  Q
    ||||||||||||||||||||| ||||||||||||  | | |||||||| ||||||| ||||| |||||||||| ||||||||||||||||||||||||||    
T  30934602 gcatattgccagggaataatgccaggagcaagaactcctagcaaatttaccaggagttatgcgagggaaaccc-tggcaaattgaaatggaacgctttta 30934700  T
Q  118 gcaaaaacaggggtgtg-ccctcggaaattgcaagcagcccctggcttattatttcccctttattttannnnnnnaacaaaacaccacacattcttttat 216  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||    
T  30934701 gcaaaaacaggggtgtgcccctcgcaaattgcaagcagcccctggcttattatttcccctttattttatttttttaacaaaacaccacacattcttttat 30934800  T
Q  217 ctct 220  Q
    ||||    
T  30934801 ctct 30934804  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 40070740 - 40070659
Alignment:
Q  18 gcatattgccagggaataatgtcaggagcaagaatccttggcaaatttgccaggagctatgcca-gggaaacccctggcaaa 98  Q
    |||||| |||||||||||||| ||||||||||||  | ||| ||||| | ||| ||||||| || ||||||| |||||||||    
T  40070740 gcatatggccagggaataatgccaggagcaagaactcctggaaaattcggcagaagctatgtcaggggaaactcctggcaaa 40070659  T

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Target: chr1 (Bit Score: 100; Significance: 1e-49; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 89 - 220
Target Start/End: Complemental strand, 22590401 - 22590269
Alignment:
Q  89 ccctggcaaattgaaatggaacgcttttagcaaaaacaggggtgtg-ccctcggaaattgcaagcagcccctggcttattatttcccctttattttannn 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||       
T  22590401 ccctggcaaattgaaatggaacgcttttagcaaaaacaggggtgtgcccctcgcaaattgcaagcagcccctggcttattatttcccctttattttattt 22590302  T
Q  188 nnnnaacaaaacaccacacattcttttatctct 220  Q
        |||||||||||||||||||||||||||||    
T  22590301 ttttaacaaaacaccacacattcttttatctct 22590269  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 22590436 - 22590390
Alignment:
Q  18 gcatattgccagggaataatgtcaggagcaagaatccttggcaaatt 64  Q
    ||||||||||||| ||||||| ||||||||||||||| |||||||||    
T  22590436 gcatattgccaggaaataatgccaggagcaagaatccctggcaaatt 22590390  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 99
Target Start/End: Complemental strand, 19722206 - 19722163
Alignment:
Q  56 tggcaaatttgccaggagctatgccagggaaacccctggcaaat 99  Q
    |||||||||| |||||||  ||||||||||||||||||||||||    
T  19722206 tggcaaatttaccaggagtaatgccagggaaacccctggcaaat 19722163  T

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Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 28952159 - 28952240
Alignment:
Q  20 atattgccagggaataatgtcaggagcaagaatccttggcaaatttgccaggagctatgccaggg-aaacccctggcaaatt 100  Q
    ||||||||||||||||||| ||||||||||||  | ||||||||||||||||||| ||||||||| |||| |||||||||||    
T  28952159 atattgccagggaataatgccaggagcaagaactcctggcaaatttgccaggagccatgccagggaaaactcctggcaaatt 28952240  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 101
Target Start/End: Original strand, 15739809 - 15739854
Alignment:
Q  56 tggcaaatttgccaggagctatgccagggaaacccctggcaaattg 101  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||    
T  15739809 tggcaaatttgccaggagtaatgccagggaaacccctggcaaattg 15739854  T

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Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 22129099 - 22129032
Alignment:
Q  20 atattgccagggaataatgtcaggagcaagaatccttggcaaatttgccaggagctatgccagggaaa 87  Q
    ||||||||||||||||||| ||||||||||||  | ||||||||||||||||||| ||||||||||||    
T  22129099 atattgccagggaataatgccaggagcaagaactcctggcaaatttgccaggagccatgccagggaaa 22129032  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 23737569 - 23737636
Alignment:
Q  18 gcatattgccagggaataatgtcaggagcaagaatccttggcaaatttgccaggagctatgccaggga 85  Q
    |||||||||||||||| |||| ||||||||||||  | ||||||||||||||||||| ||||||||||    
T  23737569 gcatattgccagggaacaatgccaggagcaagaactcctggcaaatttgccaggagcaatgccaggga 23737636  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 5023675 - 5023608
Alignment:
Q  20 atattgccagggaataatgtcaggagcaagaatccttggcaaatttgccaggagctatgccagggaaa 87  Q
    |||||| |||||||||||| || |||||||||  | ||| ||||||||||||||| ||||||||||||    
T  5023675 atattgtcagggaataatgccaagagcaagaactcctggaaaatttgccaggagccatgccagggaaa 5023608  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 98
Target Start/End: Original strand, 19906393 - 19906451
Alignment:
Q  40 caggagcaagaatccttggcaaatttgccaggagctatgccagggaaacccctggcaaa 98  Q
    ||||||||||||  | ||||||||||||||||||| ||||||||||  |||||||||||    
T  19906393 caggagcaagaactcctggcaaatttgccaggagcaatgccagggatgcccctggcaaa 19906451  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 87
Target Start/End: Original strand, 34369780 - 34369811
Alignment:
Q  56 tggcaaatttgccaggagctatgccagggaaa 87  Q
    ||||||||||||||||||||||||||||||||    
T  34369780 tggcaaatttgccaggagctatgccagggaaa 34369811  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 7622208 - 7622274
Alignment:
Q  21 tattgccagggaataatgtcaggagcaagaatccttggcaaatttgccaggagctatgccagggaaa 87  Q
    ||||||||||||| |||| ||||||||| ||  | ||||||||||||||||||||||||||||||||    
T  7622208 tattgccagggaaaaatgccaggagcaaaaactcctggcaaatttgccaggagctatgccagggaaa 7622274  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 34742426 - 34742506
Alignment:
Q  18 gcatattgccagggaataatgtcaggagcaagaatccttggcaaatttgccaggagctatgccagggaaacccctggcaaa 98  Q
    |||| |||||||| ||| ||| ||||||||  || || ||||||||||||||||  |||||||| ||||||||||||||||    
T  34742426 gcattttgccaggaaattatgccaggagcatcaacccctggcaaatttgccagggactatgccaaggaaacccctggcaaa 34742506  T

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Target: scaffold0179 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 94
Target Start/End: Original strand, 11246 - 11315
Alignment:
Q  25 gccagggaataatgtcaggagcaagaatccttggcaaatttgccaggagctatgccagggaaacccctgg 94  Q
    |||||||||  ||| ||||||||||||  ||||||||||||||||||||| ||||||||||  |||||||    
T  11246 gccagggaactatgccaggagcaagaactcttggcaaatttgccaggagcaatgccagggatgcccctgg 11315  T

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Target: scaffold0179; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 94
Target Start/End: Complemental strand, 23867 - 23800
Alignment:
Q  27 cagggaataatgtcaggagcaagaatccttggcaaatttgccaggagctatgccagggaaacccctgg 94  Q
    |||||||  ||| ||||||||||||  | ||||||||||||||||||| ||||||||||  |||||||    
T  23867 cagggaactatgccaggagcaagaactcctggcaaatttgccaggagcaatgccagggatgcccctgg 23800  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 22691092 - 22691023
Alignment:
Q  18 gcatattgccagggaataatgtcaggagcaagaatccttggcaaatttgccaggagctatgccagggaaa 87  Q
    ||||||||||||||||||||| ||||||||||||    || ||||||| |||||||||||||||| ||||    
T  22691092 gcatattgccagggaataatgccaggagcaagaactgctgtcaaattttccaggagctatgccagagaaa 22691023  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 19831040 - 19830980
Alignment:
Q  19 catattgccagggaataatgtcaggagcaagaatccttggcaaatttgccaggagctatgc 79  Q
    ||||||||||||||| |||| ||||||||||||  | ||| ||||||||||||||||||||    
T  19831040 catattgccagggaacaatgccaggagcaagaactcctggaaaatttgccaggagctatgc 19830980  T

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Target: scaffold0029 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 101
Target Start/End: Complemental strand, 60526 - 60481
Alignment:
Q  56 tggcaaatttgccaggagctatgccagggaaacccctggcaaattg 101  Q
    |||||||||||| |||||  ||||||||||||||||||||||||||    
T  60526 tggcaaatttgctaggagtaatgccagggaaacccctggcaaattg 60481  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 21530237 - 21530317
Alignment:
Q  18 gcatattgccagggaataatgtcaggagcaagaatccttggcaaatttgccaggagctatgccagggaaacccctggcaaa 98  Q
    |||| |||||||| ||| ||| ||||||||  ||  | ||||||||||||||||  |||||||| ||||||||||||||||    
T  21530237 gcattttgccaggaaattatgccaggagcatcaactcctggcaaatttgccagggactatgccaaggaaacccctggcaaa 21530317  T

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Target: scaffold0014 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 101
Target Start/End: Original strand, 17949 - 17991
Alignment:
Q  59 caaatttgccaggagctatgccagggaaacccctggcaaattg 101  Q
    |||||||||||||||  |||||||||||||||||| |||||||    
T  17949 caaatttgccaggagtaatgccagggaaacccctgacaaattg 17991  T

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