View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10761_low_3 (Length: 481)
Name: NF10761_low_3
Description: NF10761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10761_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 372; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 21 - 471
Target Start/End: Complemental strand, 38245237 - 38244786
Alignment:
| Q |
21 |
tctagatctcaaacacgaatataaaaataaaagacgttagttttaaagagatcagtctcaaggagacttatttacacttacacaaaatacttactaaaaa |
120 |
Q |
| |
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|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
38245237 |
tctaaatctcaaacacgaatataaaaataaaacacgttagttttaaagagatcagtctcaaggcgacttatttacacttacacaaaatacttactaaaaa |
38245138 |
T |
|
| Q |
121 |
acactaattaaacaccaaattaaagggcacaattaaaattgacctaacaattgagtattgaaaaacaaagaagcatacaataattaattaaactactnnn |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38245137 |
acactaattaaacaccaaattaaagggcacaattaaaactgacctaacaattgagtattgaaaaacaaagaagcatacaataattaattaaactactaaa |
38245038 |
T |
|
| Q |
221 |
nnnnn-gtaaacatcacatattaagcatgcatattaatattaattatctgatggctccgacttgacttttatcccacttggaagaggggtgagagcaatc |
319 |
Q |
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|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38245037 |
aaaaaagtaaacatcacaaattaagcatgcatattaatattagttatctgatggctccgacttgacttttatcccacttggaagaggggtgagagaaatc |
38244938 |
T |
|
| Q |
320 |
atattatgatcatcatcattgattgaagcatgtttcttatcagcacaagcaacaacaggaacaaaagtagttattccgtcattgagcttttgaatctgaa |
419 |
Q |
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|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |
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| T |
38244937 |
atattatgatcatcattattgattgaagcatgtgacttatcagcacaagcaacaacaggaacaaaagtagttcttccatcattgagcttttgaatctgaa |
38244838 |
T |
|
| Q |
420 |
gacgcggtctctttcgaatcctagaattgtatctcttttttctgtcttcttc |
471 |
Q |
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| T |
38244837 |
gacgcggtctctttcgaatcctagaattgtatctcttttttctgtcttcttc |
38244786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 253 - 471
Target Start/End: Complemental strand, 38261304 - 38261086
Alignment:
| Q |
253 |
ttaatattaattatctgatggctccgacttgacttttatcccacttggaagaggggtgagagcaatcatattatgatcatcatcattgattgaagcatgt |
352 |
Q |
| |
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|||| ||||||||| | | ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
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| T |
38261304 |
ttaagattaattatttcaaggctcagacttgacttttatcccatttggaagaggggtgagagcaatcatattatgaccatcatcattgacataagcatgt |
38261205 |
T |
|
| Q |
353 |
ttcttatcagcacaagcaacaacaggaacaaaagtagttattccgtcattgagcttttgaatctgaagacgcggtctctttcgaatcctagaattgtatc |
452 |
Q |
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||||||| ||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
38261204 |
gacttatcaccacaagcaataacaggaacaaaagtagttgttccatcattgagcttttgaatctgaagacgcggcctctttcgaatcctagaaatgtatc |
38261105 |
T |
|
| Q |
453 |
tcttttttctgtcttcttc |
471 |
Q |
| |
|
||||||||||||||||||| |
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| T |
38261104 |
tcttttttctgtcttcttc |
38261086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 26 - 215
Target Start/End: Complemental strand, 38262634 - 38262445
Alignment:
| Q |
26 |
atctcaaacacgaatataaaaataaaagacgttagttttaaagagatcagtctcaaggagacttatttacacttacacaaaatacttactaaaaaacact |
125 |
Q |
| |
|
|||||||| ||| ||||||||||||| || |||||||||||||||| ||||||| |||| ||||||||| |||||||||||||||||||||| |||||| |
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| T |
38262634 |
atctcaaatgcgagtataaaaataaaacacattagttttaaagagattagtctcagggaggcttatttactcttacacaaaatacttactaaacaacact |
38262535 |
T |
|
| Q |
126 |
aattaaacaccaaattaaagggcacaattaaaattgacctaacaattgagtattgaaaaacaaagaagcatacaataattaattaaacta |
215 |
Q |
| |
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||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||| |
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| T |
38262534 |
aattaaacatcaaattaaagggcacaaataaaattgacctaacaattgagtactgaaaaacaaagaagcatacaataactaatgaaacta |
38262445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 366 - 469
Target Start/End: Original strand, 2589546 - 2589649
Alignment:
| Q |
366 |
aagcaacaacaggaacaaaagtagttattccgtcattgagcttttgaatctgaagacgcggtctctttcgaatcctagaattgtatctcttttttctgtc |
465 |
Q |
| |
|
|||||||||| ||||||||||||||| |||| |||||||||||||||||| | ||| ||||||||||| ||| |||| |||||||||||||||| || |
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| T |
2589546 |
aagcaacaactggaacaaaagtagttgttccatcattgagcttttgaatccggagatttggtctctttcggatcttagacatgtatctcttttttctctc |
2589645 |
T |
|
| Q |
466 |
ttct |
469 |
Q |
| |
|
|||| |
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|
| T |
2589646 |
ttct |
2589649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 370 - 460
Target Start/End: Original strand, 10299610 - 10299700
Alignment:
| Q |
370 |
aacaacaggaacaaaagtagttattccgtcattgagcttttgaatctgaagacgcggtctctttcgaatcctagaattgtatctctttttt |
460 |
Q |
| |
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|||||| ||||||||||||||| ||| |||||||||||||||||||| ||| ||||||||| ||| |||| |||||||||||||| |
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| T |
10299610 |
aacaaccggaacaaaagtagttgttctatcattgagcttttgaatctggagatttggtctcttttagatcatagacatgtatctctttttt |
10299700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 369 - 459
Target Start/End: Complemental strand, 2589923 - 2589833
Alignment:
| Q |
369 |
caacaacaggaacaaaagtagttattccgtcattgagcttttgaatctgaagacgcggtctctttcgaatcctagaattgtatctcttttt |
459 |
Q |
| |
|
||||||| |||||||||| ||| |||| ||||||| |||||||| |||||| ||||||||| | |||||||| ||||||||||||| |
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| T |
2589923 |
caacaactcgaacaaaagttgttgttccaacattgagtttttgaatatgaagatttggtctctttgggatcctagacatgtatctcttttt |
2589833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 374 - 471
Target Start/End: Original strand, 47285507 - 47285604
Alignment:
| Q |
374 |
acaggaacaaaagtagttattccgtcattgagcttttgaatctgaagacgcggtctctttcgaatcctagaattgtatctcttttttctgtcttcttc |
471 |
Q |
| |
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|||| ||||| ||||||| |||| |||| ||||||||||||||| ||| ||||||||||| |||||||| |||||||||||||||| |||||||| |
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| T |
47285507 |
acagaaacaagagtagttgttccatcatcgagcttttgaatctggagatatggtctctttcggatcctagacatgtatctcttttttctctcttcttc |
47285604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 470
Target Start/End: Complemental strand, 22222657 - 22222556
Alignment:
| Q |
369 |
caacaacaggaacaaaagtagttattccgtcattgagcttttgaatctgaagacgcggtctctttcgaatcctagaattgtatctcttttttctgtcttc |
468 |
Q |
| |
|
||||||| | |||||| || ||| |||| ||||||| ||||||||||| ||| | ||||||| | |||||||| |||||||||||||||| ||||| |
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|
| T |
22222657 |
caacaactgaaacaaatgttgttgttccaacattgagtttttgaatctgcagatttgttctctttgggatcctagacatgtatctcttttttctttcttc |
22222558 |
T |
|
| Q |
469 |
tt |
470 |
Q |
| |
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|| |
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|
| T |
22222557 |
tt |
22222556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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