View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10761_low_31 (Length: 207)
Name: NF10761_low_31
Description: NF10761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10761_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 156; Significance: 4e-83; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 31949133 - 31948959
Alignment:
| Q |
20 |
gggacaaattataaaaaattctagtttttgtatgatgaattaataatcgatgaatattttaaatttagcaaccgatcgatgcatgcatgaa--attgttg |
117 |
Q |
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| T |
31949133 |
gggacaaattataaaaaattgtagtttttgtatgatgaattaataatcgatgaatattttaaatttagcaaccgatcgatgcatgcatgaaatattgttg |
31949034 |
T |
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| Q |
118 |
aaatctttgcaatatattttctgtgttgtttaatatatggtggaagtagcatttagaagacaaactatatctctg |
192 |
Q |
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| T |
31949033 |
aaatctttgcaatatattttctgtgttgtttaatatatggtagaagtagcatttagaagacaaactatatctctg |
31948959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 20 - 181
Target Start/End: Complemental strand, 31947532 - 31947369
Alignment:
| Q |
20 |
gggacaaattataaaaaattctagtttttgtatgatgaattaataatcgatgaatattttaaatttagcaaccgatcgatgcatgcatgaa--attgttg |
117 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||| |
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| T |
31947532 |
gggacaaattataaaaaattgtagtttttgtatgatgaattaataatcgataaatattttaaatttagcaacggatcgatgcatgcatgaaatattgttg |
31947433 |
T |
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| Q |
118 |
aaatctttgcaatatattttctgtgttgtttaatatatggtggaagtagcatttagaagacaaa |
181 |
Q |
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| T |
31947432 |
aaatctttgcaatatattttctgtgttctttaatatgtggtggaactagcatttagaagacaaa |
31947369 |
T |
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