View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10761_low_4 (Length: 466)
Name: NF10761_low_4
Description: NF10761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10761_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 419; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 17 - 459
Target Start/End: Original strand, 1959245 - 1959687
Alignment:
| Q |
17 |
agaaatgtaaagaaaagaaagtgatgttgatatccagagagagtaaacaataattaaagctagctgcgaagaaattatatgtttttacaaaggcatttcg |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
1959245 |
agaaatgtaaagaaaagaaagtgatgttgatatccagagagagtaaacaataattaaagctagctgcgaagaaattatatgcttttacaaaggcatttcg |
1959344 |
T |
|
| Q |
117 |
ataaaaagtgcgtacaatgggctctcaaagtgcatatagtttcttcaaagctaactttgattgacgttttctctgtctctaggtataaccatcacttcat |
216 |
Q |
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| T |
1959345 |
ataaaaagtgcgtacaatgggctctcaaagtgcatatagtttcttcaaagctaactttgattgacgttttctctgtctctaggtataaccatcacttcat |
1959444 |
T |
|
| Q |
217 |
cttctttacggttcatcatctctattgctatccttcagattttgattttagacatagaaatggtctatcattttgactttgaaggaagaataaggcgtcc |
316 |
Q |
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| T |
1959445 |
cttctttaccgttcatcatctctattgctatccttcagattttgattttagacatagaaatggtctatcattttgactttgaagaaagaataaggcgtcc |
1959544 |
T |
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| Q |
317 |
tatgtaaacaagtagtcaaaactatactagatcggtcgaattgggaatcggtcttacctataatcaggcaaaacatgagtttcacaaggttctcgtagtc |
416 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
1959545 |
tatgtaaacaagtagtcaaaactatactagattggtcgaattgggaatcggtcttacctataatcaggcaaaacatgaggttcacaaggttctcgtagtc |
1959644 |
T |
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| Q |
417 |
cacaagaaaataggtttgtatccctataatcttaatctctgct |
459 |
Q |
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| T |
1959645 |
cacaagaaaataggtttgtatccctataatcttaatcactgct |
1959687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 118 - 452
Target Start/End: Complemental strand, 2024164 - 2023834
Alignment:
| Q |
118 |
taaaaagtgcgtacaatgggctctcaaagtgcatatagtttcttcaaagctaactttgattgacgttttctctgtctctaggtataaccatcacttcatc |
217 |
Q |
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||||||||| |||||||| ||||||| || ||||||||||||||||| |||||||| ||||| |||||||| |||||||||||||||||||||||||| |
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| T |
2024164 |
taaaaagtgtttacaatggactctcaatgt--atatagtttcttcaaagttaactttggttgacattttctctatctctaggtataaccatcacttcatc |
2024067 |
T |
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| Q |
218 |
ttctttacggttcatcatctctattgctatccttcagattttgattttagacatagaaatggtctatcattttgactttgaa-ggaagaataaggcgtcc |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||| |||||| |||||||||||| |||| |
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| T |
2024066 |
ttctttacggttcatcatctctattgctatccttcagattttgattttaaacatagaaatgatctaccattttgattttgaagggaagaataaggtgtcc |
2023967 |
T |
|
| Q |
317 |
tatgtaaacaagtagtcaaaactatactagatcggtcgaattgggaatcggtcttacctataatcaggcaaaacatgagtttcacaaggttctcgtagtc |
416 |
Q |
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|||| |||||||||||||||||||||||||||| ||| | ||||||||| |||| ||||||||| || |||||| ||||||||||||| |||||| |
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| T |
2023966 |
tatgcaaacaagtagtcaaaactatactagatcagtcaagttgggaatcagtctgccctataatcggg---tacatgatgttcacaaggttcttgtagtc |
2023870 |
T |
|
| Q |
417 |
cacaagaaaataggtttgtatccctataatcttaat |
452 |
Q |
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| T |
2023869 |
ctcaagaaaataggtttgtatccctataatcttaat |
2023834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 2024292 - 2024213
Alignment:
| Q |
18 |
gaaatgtaaagaaaagaaagtgatgttgatatccagagagagtaaacaataattaaagctagctgcgaagaaattatatg |
97 |
Q |
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||||||||||||||||||||||||| ||||||| |||||||||||||| |||| |||||||| |||||||||| |||||| |
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| T |
2024292 |
gaaatgtaaagaaaagaaagtgatggtgatatctagagagagtaaacactaatcaaagctagttgcgaagaaactatatg |
2024213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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