View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10761_low_5 (Length: 429)
Name: NF10761_low_5
Description: NF10761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10761_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 338; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 21 - 411
Target Start/End: Complemental strand, 35355036 - 35354646
Alignment:
| Q |
21 |
tcaaaatgggaaagtaagagaggagtttcttaggaaagaactcaaagttgcaatgacccatgttgttcatgaaatcaatgtaaaatatatagccaaatag |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||| |||| |
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| T |
35355036 |
tcaaaatgggaaagtaagagaggagtttcttaggaatgaactcaaagttgcaatgacccatgttgttcatgaaatcaatgaaaaagacatagccatatag |
35354937 |
T |
|
| Q |
121 |
tgcagccacagaagattttttgatgaacaatgttgtcaacattggtatagcaaaaagtgtaaaatatgacaaatgctccgcaaatgggtgtgtcacagct |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35354936 |
tgcagccacagaagattttttgatgaacaatgttgtcaacattggtatagcaaaaagtgtaaaatatgacaaatgctccgcaaatgggtgtgtcacagct |
35354837 |
T |
|
| Q |
221 |
gtcaaaatacataagaaagttgtgttattttgacaccaaaatttggacactcacaaatcaagcatgcaaaaatgaaagnnnnnnngttcatacaagtgat |
320 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
35354836 |
gtcaaaatacataagaaagttgtgttattttgacaccaaaatttggacactcacaaatcaagcatgcaaaaatgaaagaaaaaaagttcatacaagtgat |
35354737 |
T |
|
| Q |
321 |
aggctcagtaacaattgaagaatggtgatgagaatgataacgagagtatagataatggtgatgaagtgctctatgtagccaatagtataaa |
411 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
35354736 |
aggctcagtaacaattgaagaatggtgatgagagtgataacgagagtatagataatgatgatgaagtgctctatgaagccaatagtataaa |
35354646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 23 - 226
Target Start/End: Complemental strand, 35381040 - 35380837
Alignment:
| Q |
23 |
aaaatgggaaagtaagagaggagtttcttaggaaagaactcaaagttgcaatgacccatgttgttcatgaaatcaatgtaaaatatatagccaaatagtg |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| | | || |
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| T |
35381040 |
aaaatgggaaagtaagagaggagtttcttaggaaagaactcaaagttgcaatgacccatattgttcatgaaatcaatgtaaaatatataaccatacaatg |
35380941 |
T |
|
| Q |
123 |
cagccacagaagattttttgatgaacaatgttgtcaacattggtatagcaaaaagtgtaaaatatgacaaatgctccgcaaatgggtgtgtcacagctgt |
222 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
35380940 |
cagccacggaagatttattgatgaacaatgttgtcaacattgggatagcaaaaagtgtaaaatatgacaaatgctccgcaaatgggtgtgcgacagctgt |
35380841 |
T |
|
| Q |
223 |
caaa |
226 |
Q |
| |
|
|||| |
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|
| T |
35380840 |
caaa |
35380837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 28 - 223
Target Start/End: Complemental strand, 35370473 - 35370278
Alignment:
| Q |
28 |
gggaaagtaagagaggagtttcttaggaaagaactcaaagttgcaatgacccatgttgttcatgaaatcaatgtaaaatatatagccaaatagtgcagcc |
127 |
Q |
| |
|
||||||||| |||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| | ||||||| ||||||||||| |
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|
| T |
35370473 |
gggaaagtatgagaagagcttcttaggaaagaactcaaagttgcaatgacccatattgttcatgaaatcaatgaaaaagacatagccatatagtgcagcc |
35370374 |
T |
|
| Q |
128 |
acagaagattttttgatgaacaatgttgtcaacattggtatagcaaaaagtgtaaaatatgacaaatgctccgcaaatgggtgtgtcacagctgtc |
223 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
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|
| T |
35370373 |
acagatgattttttgatgaacaatgttgttaacattggtatagcaaaaagtgtaaaatatgacaaatgctcggcaaatgggtgtgccacagctgtc |
35370278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 272 - 411
Target Start/End: Complemental strand, 35379289 - 35379150
Alignment:
| Q |
272 |
cacaaatcaagcatgcaaaaatgaaagnnnnnnngttcatacaagtgataggctcagtaacaattgaagaatggtgatgagaatgataacgagagtatag |
371 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||| |
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|
| T |
35379289 |
cacaaatcaagcatgcaaaaatgaaagaaaaaaagttcatacaagtgataggctcagtgacaattgaagaatgatggtgagaatgataacgagagtatag |
35379190 |
T |
|
| Q |
372 |
ataatggtgatgaagtgctctatgtagccaatagtataaa |
411 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||| |
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|
| T |
35379189 |
ataatgatgatgaagtgctctatgaagccaatagtataaa |
35379150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 306 - 411
Target Start/End: Complemental strand, 35369896 - 35369791
Alignment:
| Q |
306 |
gttcatacaagtgataggctcagtaacaattgaagaatggtgatgagaatgataacgagagtatagataatggtgatgaagtgctctatgtagccaatag |
405 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
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|
| T |
35369896 |
gttcatacaagtgacaggctcagtgacaattgaagaatgatggtgagaatgataacgagagtatagataatgatgatgaagtgctctatgaagccaatag |
35369797 |
T |
|
| Q |
406 |
tataaa |
411 |
Q |
| |
|
|||||| |
|
|
| T |
35369796 |
tataaa |
35369791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 97; Significance: 2e-47; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 28 - 224
Target Start/End: Complemental strand, 19684679 - 19684483
Alignment:
| Q |
28 |
gggaaagtaagagaggagtttcttaggaaagaactcaaagttgcaatgacccatgttgttcatgaaatcaatgtaaaatatatagccaaatagtgcagcc |
127 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| ||||| ||| | | |||| || |
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|
| T |
19684679 |
gggaaagtaggagaagagtttcttaggaaagaactcaaaattgcaatgacccatgttgttcataaaatcgatgtaaaagatataaccatacaatgcaacc |
19684580 |
T |
|
| Q |
128 |
acagaagattttttgatgaacaatgttgtcaacattggtatagcaaaaagtgtaaaatatgacaaatgctccgcaaatgggtgtgtcacagctgtca |
224 |
Q |
| |
|
||| |||||||| ||||||||||||||||||||||||||| ||||||||| ||||||| ||| ||| |||||||| |||||||| ||||||| |
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|
| T |
19684579 |
acactcgattttttcatgaacaatgttgtcaacattggtataagaaaaagtgtgaaatatgccaacatctcagcaaatggatgtgtcaccgctgtca |
19684483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 306 - 410
Target Start/End: Original strand, 19630480 - 19630584
Alignment:
| Q |
306 |
gttcatacaagtgataggctcagtaacaattgaagaatggtgatgagaatgataacgagagtatagataatggtgatgaagtgctctatgtagccaatag |
405 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
19630480 |
gttcatacaagtgataggctcggtgacaattgaagaatgatgatgagaatggtaacgagagtatagataatgatgatgaagtgctctatgtagccaatag |
19630579 |
T |
|
| Q |
406 |
tataa |
410 |
Q |
| |
|
||||| |
|
|
| T |
19630580 |
tataa |
19630584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 28 - 224
Target Start/End: Original strand, 19630147 - 19630344
Alignment:
| Q |
28 |
gggaaagtaagagaggagtttcttaggaaagaactcaaagttgcaatgacccatgttgttcatgaaatcaatgtaaaatatatagccaaatagtgcagcc |
127 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| ||||| ||| | | ||||| |
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|
| T |
19630147 |
gggaaagtaggagaagagtttcttaggaaagaactcaaaattgcaatgacccatgttgttcataaaatcgatgtaaaagatataaccatacaccgcagca |
19630246 |
T |
|
| Q |
128 |
acagaagattttttgatgaacaatgttg-tcaacattggtatagcaaaaagtgtaaaatatgacaaatgctccgcaaatgggtgtgtcacagctgtca |
224 |
Q |
| |
|
| ||| |||||||| | ||||| ||||| |||| ||||| ||| ||||||||| ||||||| ||| ||| |||||||||||| |||||||||||| |
|
|
| T |
19630247 |
atagacgatttttttacgaacattgttgctcaatattgggataaaaaaaagtgtgaaatatgccaatatctcagcaaatgggtgtatcacagctgtca |
19630344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 306 - 410
Target Start/End: Complemental strand, 19684317 - 19684213
Alignment:
| Q |
306 |
gttcatacaagtgataggctcagtaacaattgaagaatggtgatgagaatgataacgagagtatagataatggtgatgaagtgctctatgtagccaatag |
405 |
Q |
| |
|
|||||||| ||||||||| ||||| |||||||||||||| || |||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
19684317 |
gttcataccagtgataggttcagtgacaattgaagaatgatggtgagaatggtaacgagaatatagataatgatgatgaagtgctctatgtagccaatag |
19684218 |
T |
|
| Q |
406 |
tataa |
410 |
Q |
| |
|
||||| |
|
|
| T |
19684217 |
tataa |
19684213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 328 - 407
Target Start/End: Original strand, 2258460 - 2258539
Alignment:
| Q |
328 |
gtaacaattgaagaatggtgatgagaatgataacgagagtatagataatggtgatgaagtgctctatgtagccaatagta |
407 |
Q |
| |
|
|||||||| |||||||| |||||||||||||| | ||| || || |||| |||||||||||||| |||| ||||||||| |
|
|
| T |
2258460 |
gtaacaatggaagaatgatgatgagaatgatatctagaatagaggaaatgatgatgaagtgctctgtgtaaccaatagta |
2258539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 328 - 404
Target Start/End: Original strand, 2280450 - 2280526
Alignment:
| Q |
328 |
gtaacaattgaagaatggtgatgagaatgataacgagagtatagataatggtgatgaagtgctctatgtagccaata |
404 |
Q |
| |
|
|||||||| |||||||| |||||||||||||| | ||| || || |||| |||||||||||||| |||| |||||| |
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|
| T |
2280450 |
gtaacaatggaagaatgatgatgagaatgatatctagaatagaggaaatgatgatgaagtgctctgtgtaaccaata |
2280526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 103
Target Start/End: Complemental strand, 2251453 - 2251396
Alignment:
| Q |
46 |
tttcttaggaaagaactcaaagttgcaatgacccatgttgttcatgaaatcaatgtaa |
103 |
Q |
| |
|
||||||||||| ||||||||| || || ||||||| || |||||||||||||||||| |
|
|
| T |
2251453 |
tttcttaggaatgaactcaaaattacagtgacccaaattattcatgaaatcaatgtaa |
2251396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 103
Target Start/End: Original strand, 2256744 - 2256801
Alignment:
| Q |
46 |
tttcttaggaaagaactcaaagttgcaatgacccatgttgttcatgaaatcaatgtaa |
103 |
Q |
| |
|
||||||||||| ||||||||| || || ||||||| || |||||||||||||||||| |
|
|
| T |
2256744 |
tttcttaggaatgaactcaaaattacagtgacccaaattattcatgaaatcaatgtaa |
2256801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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