View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10761_low_6 (Length: 428)

Name: NF10761_low_6
Description: NF10761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10761_low_6
NF10761_low_6
[»] chr8 (1 HSPs)
chr8 (1-413)||(42141057-42141469)
[»] chr3 (1 HSPs)
chr3 (75-394)||(23660102-23660410)


Alignment Details
Target: chr8 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Original strand, 42141057 - 42141469
Alignment:
Q  1 cccttcaggaacatctttcaacggcggcgtcaaacatttcaaatgaaacccacctaaacaactatcacactcaatcatgatttcatccccagaacgaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42141057 cccttcaggaacatctttcaacggcggcgtcaaacatttcaaatgaaacccacctaaacaactatcacactcaatcatgatttcatccccagaacgaaaa 42141156  T
Q  101 caaaacctacattcctccacttcaggatcttcctcatcagaagtagcatcttctctcctcttcacataaacatcatccccaacttcaaattcaccgccgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42141157 caaaacctacattcctccacttcaggatcttcctcatcagaagtagcatcttctctcctcttcacataaacatcatccccaacttcaaattcaccgccgt 42141256  T
Q  201 cataaacaactttcttgtaatactgcaccttcgcaatctttccaccttttctcccagctcttgtaacaaccattttctcaaccttaacctcgttcttcct 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  42141257 cataaacaactttcttgtaatactgcaccttcgcaatctttccaccttttctcccagcccttgtaacaaccattttctcaaccttaacctcgttcttcct 42141356  T
Q  301 ctttctcttcttagtttccgattgatccggcgacgtcggagcgaacgaaaccttaacggaatctcccttcccatttctcttcttcaattcaaccgttttt 400  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42141357 ctttctcttcttagtttccgattgatccggcgatgtcggagcgaacgaaaccttaacggaatctcccttcccatttctcttcttcaattcaaccgttttt 42141456  T
Q  401 tcaccttccttct 413  Q
    |||||||||||||    
T  42141457 tcaccttccttct 42141469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 175; Significance: 4e-94; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 75 - 394
Target Start/End: Original strand, 23660102 - 23660410
Alignment:
Q  75 tcatgatttcatccccagaacg---aaaacaaaacctacattcctccacttcaggatcttcctcatcagaagtagcatcttctctcctcttcacataaac 171  Q
    ||||||||||||||||| ||||   |||| |||||||||||||||||| |||||||||||| |||   || |||||||||||||||   |||||||||||    
T  23660102 tcatgatttcatccccaaaacggaaaaaaaaaaacctacattcctccaattcaggatcttcttca---gaggtagcatcttctctc---ttcacataaac 23660195  T
Q  172 atcatccccaacttcaaattcaccgccgtcataaacaactttcttgtaatactgcaccttcgcaatctttccaccttttctcccagctcttgtaacaacc 271  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  23660196 atcattcccaacttcaaattcaccgccatcataaacaactttcttgtaatactgcaccttcgcaatctttccaccttttctcccagctcctgtaacaacc 23660295  T
Q  272 attttctcaaccttaacctcgttcttcctctttctcttcttagtttccgattgatccggcgacgtcggagcgaacgaaaccttaacggaatctcccttcc 371  Q
     ||||||||||  ||||||||||||||||||||||||||||||||||| |||  ||      | | |||||||||||||||||||| ||||||||||||     
T  23660296 gttttctcaacactaacctcgttcttcctctttctcttcttagtttccaatt--tc------ccttggagcgaacgaaaccttaacagaatctcccttct 23660387  T
Q  372 catttctcttcttcaattcaacc 394  Q
    ||||||| |||||| ||||||||    
T  23660388 catttctattcttctattcaacc 23660410  T

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