View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10761_low_8 (Length: 416)
Name: NF10761_low_8
Description: NF10761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10761_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 14 - 400
Target Start/End: Complemental strand, 11177289 - 11176903
Alignment:
| Q |
14 |
agacgttaacatgcgacaatattcaacttgaagcaccttaattctaccaaggttcaagtttccttcaaataatcttccatgcaactggtgacataaatgg |
113 |
Q |
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| T |
11177289 |
agacgttaacatgcgacaatattcaacttgaagcaccttaattctaccaaggttcaagtttccttcaaataatctcccatgcaactggtgacataaatgg |
11177190 |
T |
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| Q |
114 |
atactcatctcttgcatgtcaccaaaaaagtctgaaggaggtggaccatagcccagttctttcaaattatccatgcttctaacctctatcttaaccaact |
213 |
Q |
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| T |
11177189 |
atactcatctcttgcatgttaccaaagaagtctgaaggaggtggaccatagcacagttctttcaaattatccatgcttctaacctctatcttaaccaact |
11177090 |
T |
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| Q |
214 |
tagagaatatgcttccaatggaagatgaaaagttattagtatcaatgaggcattctatcttagaacaattctcaagcttgagatggatcatgtcattcat |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
11177089 |
tagagaatatgcttccaatggaagatgaaaagttattagtatcaatgaggcattctatcttagaacaaatctcaagcttgagatggatcatgtcattcat |
11176990 |
T |
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| Q |
314 |
ttctcctcctattgcttcaactagttgcggtgttacagttgtataatctccttgaatcctcttcaaatgaagaatctctgctctttc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
11176989 |
ttctcctcctattgcttcaactagttgcggtgttacagttgtataatctcctcgaatcctcttcaaatgaagaatctctgctctttc |
11176903 |
T |
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