View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10761_low_9 (Length: 389)
Name: NF10761_low_9
Description: NF10761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10761_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 43 - 365
Target Start/End: Original strand, 3250123 - 3250445
Alignment:
| Q |
43 |
gttaacaataattctcatttgtttagttagagtttctaacagatgtaatgagccttttagtccaaatagaaaagacgtaatgtagctaatgcacacaatt |
142 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3250123 |
gttaacaataattctcatttgtttagttagtgtttctaacagaggtaatgagccttttagtccaaatagaaaagacgtaatgtagctaatgcacacaatt |
3250222 |
T |
|
| Q |
143 |
ctaatttttaggaatgtgnnnnnnnnnnnngagagaattttttaggtatgtgttgttattaaagtttaaatatatgcttgatgtctataaatataacaat |
242 |
Q |
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|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3250223 |
ctaatttttaggtatgtg--ttttttttttgagagaattttttaggtatgtgttgttattaaagtttaaatatatgcttgatgtctataaatataacaat |
3250320 |
T |
|
| Q |
243 |
gttagttttagtcatgtaagttatacttgcgt--nnnnnnnntgtcatgtaagttgttttggatttcatcatacttcaaaagttagaaatgatgattttt |
340 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3250321 |
gttagttttagtcatgtaagttatacttgcgtaaaaaaaaaatgtcatgcaagttgttttggatttcatcatacttcaaaagttagaaatgatgattttt |
3250420 |
T |
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| Q |
341 |
agtccttaacatcaacaatcgttat |
365 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
3250421 |
agtccttaacatcaacaatcgttat |
3250445 |
T |
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