View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10762_low_4 (Length: 240)
Name: NF10762_low_4
Description: NF10762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10762_low_4 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 16 - 240
Target Start/End: Complemental strand, 44725912 - 44725672
Alignment:
| Q |
16 |
cacatattctctaatataccaacgctattgtttcttccattcggagctccatcataaaagccaaaaatatcacaaatatggctttactttgcgagcagac |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
44725912 |
cacatattctctaatataccaacgctattgtttcttccattcggagctccatcataaaagccaaaaatatcacaaatatggctttactttgcgagcaaac |
44725813 |
T |
|
| Q |
116 |
tttggtattttatcatttctggaatagtcatcgggacctca----------------taaatgttcctttttgtacacataaatgaccaagatttttaaa |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44725812 |
tttggtattttatcatttctggaatagtcatcgggacctcatttagccggatatgccttaatgttcctttttgtacacataaatgaccaagatttttaaa |
44725713 |
T |
|
| Q |
200 |
tcaaatatgtgagtgaatcttcccttccaaaccttaacgcc |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44725712 |
tcaaatatgtgagtgaatcttcccttccaaaccttaacgcc |
44725672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University