View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10763_high_1 (Length: 241)
Name: NF10763_high_1
Description: NF10763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10763_high_1 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 2950950 - 2951173
Alignment:
| Q |
19 |
tatcatatgcttggattgtcgttggaaatactctttttggtctttgttatactcaatttgttccaaattatatgtcattt-aattagcaaaaagaaaatt |
117 |
Q |
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| T |
2950950 |
tatcatatgcttcgattgtcgttggaaatactccttttggtctttgttatactcaatttgtttcaaattatatatcattttaattagcaaaaagaaaatt |
2951049 |
T |
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| Q |
118 |
attcaaaatatgtcattttacaatatcaataaatatttaatgtttattttcccgttaatacatttcttaatatatataaaattcataaaatgatttgaaa |
217 |
Q |
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| T |
2951050 |
attctaaatatgtcattttacaatatcaataaatatttaatgtttattttcccattaatatatttcttaatatatgtaaaattcataaaatgatttgaaa |
2951149 |
T |
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| Q |
218 |
cagcaaaagtaaatagaaaaacca |
241 |
Q |
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|||||||||||||||||||||||| |
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| T |
2951150 |
cagcaaaagtaaatagaaaaacca |
2951173 |
T |
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Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 125 - 167
Target Start/End: Complemental strand, 14045218 - 14045176
Alignment:
| Q |
125 |
atatgtcattttacaatatcaataaatatttaatgtttatttt |
167 |
Q |
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| T |
14045218 |
atatgtcattttacaatatcaataaataattaatgcttatttt |
14045176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 77 - 170
Target Start/End: Original strand, 31063497 - 31063591
Alignment:
| Q |
77 |
tgttccaaattatatgtcatttaattagcaaaaagaaaattattcaaaat-atgtcattttacaatatcaataaatatttaatgtttattttccc |
170 |
Q |
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| T |
31063497 |
tgttccaaattacatgtcattctagcaaaaaaaaaaaaattgttccaaattatgtcattttacaatatcaataaataagtaatgcttattttccc |
31063591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 168
Target Start/End: Complemental strand, 19529811 - 19529770
Alignment:
| Q |
127 |
atgtcattttacaatatcaataaatatttaatgtttattttc |
168 |
Q |
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| T |
19529811 |
atgttattttacaatatcaataaataattattgtttattttc |
19529770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 165
Target Start/End: Original strand, 24014499 - 24014539
Alignment:
| Q |
125 |
atatgtcattttacaatatcaataaatatttaatgtttatt |
165 |
Q |
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| T |
24014499 |
atatgtcattttacaatatcaataaattattaatgtttatt |
24014539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 168
Target Start/End: Complemental strand, 5522388 - 5522345
Alignment:
| Q |
125 |
atatgtcattttacaatatcaataaatatttaatgtttattttc |
168 |
Q |
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| T |
5522388 |
atatgtcattttacaatatcaataaattattaaagtttattttc |
5522345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 177
Target Start/End: Complemental strand, 43264133 - 43264077
Alignment:
| Q |
121 |
caaaatatgtcattttacaatatcaataaatatttaatgtttattttcccgttaata |
177 |
Q |
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| T |
43264133 |
caaaatatgtcattttacaatatcaaagaatcattaatgcttattttaccattaata |
43264077 |
T |
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