View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10763_low_1 (Length: 394)
Name: NF10763_low_1
Description: NF10763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10763_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 20 - 381
Target Start/End: Original strand, 5351784 - 5352144
Alignment:
| Q |
20 |
ggaaagtctgctgccatagtgagtgttggaggaggacatggtggagcaaagtcacactaccatctccgccaaattggtgttttcattgatcttcatttca |
119 |
Q |
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| T |
5351784 |
ggaaagtctgctgccatagtgagtgttggaggaggacacggcggtgcaaagtcacactatcatctccgacaaattggagttttcatcgatcttcatttca |
5351883 |
T |
|
| Q |
120 |
tcaataaacccgagtttttcttaaacgcgtttcagcctccagcaaaatttaacggtgatggcgatttgattgatcaagatgccaagaataatttggaggg |
219 |
Q |
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| T |
5351884 |
tcaataaacccgagtttttcttaaacgcgtttcagcctccagcaaaatttaacggtgatggcgatttgattgatcaagatgccaagaataatttggaggg |
5351983 |
T |
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| Q |
220 |
agttcttttgtccttgaaggcatttacccttcaacttcaaggcaaaaattgaaacaactttaagttccataaattgcttcaatcgtgatttttattcaat |
319 |
Q |
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| T |
5351984 |
agttcttttgtccttgaaggcatttacccttcaacttcaaggcaaaaattgaaacaactttaagttccataaattgcttcaatcgtgatttttattcaat |
5352083 |
T |
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| Q |
320 |
taataaaacgtatttgttctttatttacatttagaattttatttgcattgttgccttgtcct |
381 |
Q |
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| T |
5352084 |
taaaaaaatgta-ttgttctttatttgcatttagaattttatttgcattgttgccttgtcct |
5352144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 27 - 278
Target Start/End: Original strand, 5344773 - 5345024
Alignment:
| Q |
27 |
ctgctgccatagtgagtgttggaggaggacatggtggagcaaagtcacactaccatctccgccaaattggtgttttcattgatcttcatttcatcaataa |
126 |
Q |
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| T |
5344773 |
ctgcggccatagtgagtgctggaggagggcatggtggtgcaaaatcacaatatcatctccgacaaatcggagttttccttgatcttcatttcataaataa |
5344872 |
T |
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| Q |
127 |
acccgagtttttcttaaacgcgtttcagcctccagcaaaatttaacggtgatggcgatttgattgatcaagatgccaagaataatttggagggagttctt |
226 |
Q |
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|||||| ||||||||||| || ||||||||||||||||||||||| ||||||| |||||||||||| ||||||| ||||||| ||| || | |||| |
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| T |
5344873 |
acccgaatttttcttaaatgcttttcagcctccagcaaaatttaatagtgatggtgatttgattgatgaagatgctaagaataggttgttggcaattctg |
5344972 |
T |
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| Q |
227 |
ttgtccttgaaggcatttacccttcaacttcaaggcaaaaattgaaacaact |
278 |
Q |
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| T |
5344973 |
ttgtccttgaaggcatttactctgcaacttcaaggcaaaaattgaaacaact |
5345024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 20 - 272
Target Start/End: Complemental strand, 5325327 - 5325075
Alignment:
| Q |
20 |
ggaaagtctgctgccatagtgagtgttggaggaggacatggtggagcaaagtcacactaccatctccgccaaattggtgttttcattgatcttcatttca |
119 |
Q |
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|||||| |||||||||| |||||||||||||||| |||||||| ||| |||| | |||||||||||||| || |||||| ||||| ||||||||| |
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| T |
5325327 |
ggaaagcctgctgccattgtgagtgttggaggagcctttggtggaggaaaagcacagcatcatctccgccaaatcggggttttccttgatattcatttca |
5325228 |
T |
|
| Q |
120 |
tcaataaacccgagtttttcttaaacgcgtttcagcctccagcaaaatttaacggtgatggcgatttgattgatcaagatgccaagaataatttggaggg |
219 |
Q |
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|||||||||| ||||| | | || | | ||| ||| ||||| |||| ||||| |||||| || ||| ||||| |||| |||||||| ||| || |
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| T |
5325227 |
tcaataaacctgagttctacctagatgtatttaagcatccagataaatgtaacgatgatggtgacttggttgatgaagagatcaagaatagattgaagaa |
5325128 |
T |
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| Q |
220 |
agttcttttgtccttgaaggcatttacccttcaacttcaaggcaaaaattgaa |
272 |
Q |
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|||| || |||||||||||| |||||||||| |||||||||||| |||||||| |
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| T |
5325127 |
agttattgtgtccttgaaggaatttacccttaaacttcaaggcagaaattgaa |
5325075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 27 - 278
Target Start/End: Complemental strand, 5338340 - 5338089
Alignment:
| Q |
27 |
ctgctgccatagtgagtgttggaggaggacatggtggagcaaagtcacactaccatctccgccaaattggtgttttcattgatcttcatttcatcaataa |
126 |
Q |
| |
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||||||||||||||||||||||||||| |||||||| ||| | || | |||||||||||||| || |||||| ||||| |||||||||||||||| |
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| T |
5338340 |
ctgctgccatagtgagtgttggaggagcctttggtggaggaaaagctcaacatcatctccgccaaatcggggttttccttgatattcatttcatcaataa |
5338241 |
T |
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| Q |
127 |
acccgagtttttcttaaacgcgtttcagcctccagcaaaatttaacggtgatggcgatttgattgatcaagatgccaagaataatttggagggagttctt |
226 |
Q |
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||| ||||| || | | ||| ||| ||||| |||||| ||| |||||| || ||| ||||| |||| |||||||| || ||| ||||||| |
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| T |
5338240 |
acctgagttccatctagatgtatttaagcatccagataaatttgacgatgatggtgacttggttgatgaagagatcaagaatagattcaaggaagttctt |
5338141 |
T |
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| Q |
227 |
ttgtccttgaaggcatttacccttcaacttcaaggcaaaaattgaaacaact |
278 |
Q |
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||||||| |||| |||||||||||| |||||||| ||| ||||||||||| |
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| T |
5338140 |
gtgtccttaaaggaatttacccttcagcttcaaggttaaatttgaaacaact |
5338089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 71 - 267
Target Start/End: Complemental strand, 14535479 - 14535283
Alignment:
| Q |
71 |
tcacactaccatctccgccaaattggtgttttcattgatcttcatttcatcaataaacccgagtttttcttaaacgcgtttcagcctccagcaaaattta |
170 |
Q |
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|||||||| ||||| |||||| |||| ||| || ||||||||||||||||||||||| ||||| || ||| || ||| |||| || ||||| || | |
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| T |
14535479 |
tcacactatcatctacgccaagttggaatttatatcgatcttcatttcatcaataaacctgagttctttataagagcatttgagccacctgcaaagttca |
14535380 |
T |
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| Q |
171 |
acggtgatggcgatttgattgatcaagatgccaagaataatttggagggagttcttttgtccttgaaggcatttacccttcaacttcaaggcaaaaa |
267 |
Q |
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| T |
14535379 |
atactgatggcgatttgattgatgaagaggctaagaataagttgaaacaagttcttttatctttgcaggcatttactctaaggcttcaaggcaaaaa |
14535283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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