View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10764_1 (Length: 517)
Name: NF10764_1
Description: NF10764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10764_1 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 488; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 10 - 517
Target Start/End: Original strand, 935135 - 935642
Alignment:
| Q |
10 |
attattctatatatgtattgacttgttcgatttgatggtcaatttattttctgtattggaagtcatttagattgttatttttcgaggaaagttttgagta |
109 |
Q |
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| T |
935135 |
attactctatatatgtattgacttgttcgatttgatggtcaatttattttctgtattggaagtcatttagattgttatttttcgaggaaagttttgagta |
935234 |
T |
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| Q |
110 |
aatagttatataaggcctataaatatattaaattggttttataagtcattaaaaggagaaaaagaaagctcttagaacatggaagtttaactttgttgtc |
209 |
Q |
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| T |
935235 |
aatagttatataaggcctataaatatattaaattcgttttataagtcattaaaaggagaaaaagaaagctcttagaacatggaagtttaactttgttgtc |
935334 |
T |
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| Q |
210 |
acgttagtctaaggtgtaaaattgttatattcgtttgtaaagtttaatatttgtttaataactcaaagctgacaagtatttgcattggaaatgacatgaa |
309 |
Q |
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| T |
935335 |
acgttagtctaaggtgtaaaattgttatattcgtttgtaaagtttaatatttgtttaataactcaaagctcacaagtatttgcattggaaatgacatgaa |
935434 |
T |
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| Q |
310 |
atatcaaaattaatattgcacaatcacaagcaattagagattagtcatgctattacatgagagtgaaaattaaacaggattcaatttcttgaatgacatt |
409 |
Q |
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| T |
935435 |
acatcaaaattaatattgcacaatcacaagcaattagagattagtcatgctattacatgagagtgaaaattaaacaggattcaatttcttgaatgacatt |
935534 |
T |
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| Q |
410 |
ctttctgtaacctttacagcaataagagcctaaactgtagctgttgggacaaagataacatcaggaatggatttggtaacacttcgttgagtcacaggtt |
509 |
Q |
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| T |
935535 |
ctttctgtaacctttacagcaataagagcctaaactgtagctgttgggacaaagataacatcaggaatggatttggtaacacttcgttgaggcacaggtt |
935634 |
T |
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| Q |
510 |
gtcctgtt |
517 |
Q |
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| T |
935635 |
gtcctgtt |
935642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 305 - 517
Target Start/End: Original strand, 937201 - 937417
Alignment:
| Q |
305 |
atgaaatatcaaaattaatattgcacaatcacaagcaattagagattagtcatgctattac---atga-gagtgaaaattaaacaggattcaatttcttg |
400 |
Q |
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| T |
937201 |
atgaaacatcaaactaaacattgcacaattacaagcaattggagattagtcatgttattactacatcaagagagaaaattaaataggattcaatttcttc |
937300 |
T |
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| Q |
401 |
aatgacattctttctgtaacctttacagcaataagagcctaaactgtagctgttgggacaaagataacatcaggaatggatttggtaacacttcgttgag |
500 |
Q |
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| T |
937301 |
aatgacattcttttggtgactttaacagcaatgagagctaaaatagtagctgttgggacaaagataacatcaggaatggctttcataacacttagttgag |
937400 |
T |
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| Q |
501 |
tcacaggttgtcctgtt |
517 |
Q |
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| T |
937401 |
gcacagactgtcctgtt |
937417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 324 - 479
Target Start/End: Complemental strand, 7584526 - 7584365
Alignment:
| Q |
324 |
attgcacaatcacaagcaattagagattagtcatgctatta---catga-gagtgaaaattaaacaggattcaatt--tcttgaatgacattctttctgt |
417 |
Q |
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| T |
7584526 |
attgcacaatcacaagctattggagattaatcatgctattattacattaagaaaggaaattaaataggattcaatttatcttgaaagacattctttagat |
7584427 |
T |
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| Q |
418 |
aacctttacagcaataagagcctaaactgtagctgttgggacaaagataacatcaggaatgg |
479 |
Q |
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| T |
7584426 |
gacttttacagtaatgagagccaaaactgtagttgttgggacagatataacatcaagaatgg |
7584365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 454
Target Start/End: Complemental strand, 7586030 - 7585961
Alignment:
| Q |
385 |
aggattcaatttcttgaatgacattctttctgtaacctttacagcaataagagcctaaactgtagctgtt |
454 |
Q |
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| T |
7586030 |
aggattcaatttcttaaatgacattcttttgatgacttttatagcaatgagagccaaaattgtagctgtt |
7585961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 425 - 478
Target Start/End: Complemental strand, 38410495 - 38410442
Alignment:
| Q |
425 |
acagcaataagagcctaaactgtagctgttgggacaaagataacatcaggaatg |
478 |
Q |
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| T |
38410495 |
acagcaatgagagccaaaactgtagctgagggaacaaagataacatcaggaatg |
38410442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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