View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10764_11 (Length: 366)
Name: NF10764_11
Description: NF10764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10764_11 |
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Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 26653703 - 26653355
Alignment:
| Q |
1 |
taaacatggtctaaaaagtcccacttggataacgaggaagcat--cccattggagcaaaaacaattagtgaacaactactctcccgacgaaggatgaaaa |
98 |
Q |
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| T |
26653703 |
taaatatggtctaaaaagtcccacttggataacgtggaagcatatcccattggatcacaaacaattagtgaataactactctcccgacgaaggatgaaaa |
26653604 |
T |
|
| Q |
99 |
ccacaacttagaaaataggcttgcaaccttactttcaattcattcactcaatattcaagttagagaaagaaagagtaagagagagtgaaaaggcagaagt |
198 |
Q |
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| T |
26653603 |
ccacaacttagaaaataggcttgcaaccttactttcaattcattcactcaatattcaagttagagaaagaaagattaagagagagtgaaaaggcagaagc |
26653504 |
T |
|
| Q |
199 |
gaggtggtaacaaaggcttgtagatcaagtcgacttatgcaacatatcaaaatcccttgattgatcttttgatttggggcatgctagaatcatacatccc |
298 |
Q |
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| T |
26653503 |
gaggtggtaacaaaggcttgtagatcaagtcgacttatgcaacatatcaaaatcccttgattgatcttttgacttggggcatgctagaatcagacatccc |
26653404 |
T |
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| Q |
299 |
ttgtaaggaaaacaggcaagggcacttgtcgggctacgtttacaatcac |
347 |
Q |
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| T |
26653403 |
ttataaggaaaacaggcaagggtatttgtcggattaggtttacaatcac |
26653355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 119 - 242
Target Start/End: Original strand, 29275593 - 29275719
Alignment:
| Q |
119 |
ttgcaaccttactttcaattcattcactcaatattcaagttagagaaagaaagagtaagagagagtgaaaaggcagaagtgaggtggtaa---caaaggc |
215 |
Q |
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| T |
29275593 |
ttgcaacctcacttccaattcactcattcaatactcaagttagagaaagcaagcttatgagagagttaaagggctgaagcagggtagaaacatcaaagcc |
29275692 |
T |
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| Q |
216 |
ttgtagatcaagtcgacttatgcaaca |
242 |
Q |
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| T |
29275693 |
ttgtagatcaagtcgactgatgcaaca |
29275719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 167
Target Start/End: Original strand, 7480173 - 7480225
Alignment:
| Q |
115 |
aggcttgcaaccttactttcaattcattcactcaatattcaagttagagaaag |
167 |
Q |
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||||||| | ||| |||||||||||||||| ||||||||||| |||||||||| |
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| T |
7480173 |
aggcttgaagcctcactttcaattcattcattcaatattcaacttagagaaag |
7480225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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