View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10764_12 (Length: 354)
Name: NF10764_12
Description: NF10764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10764_12 |
 | |
|
| [»] scaffold0103 (1 HSPs) |
| | |
|
| [»] scaffold0016 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 38315774 - 38315446
Alignment:
| Q |
1 |
cggtggatttgttcctttgattcatgagcgatgagtttctcccacaattttgatttaagcttttgatctgtgggtttattgtgttttacactgaaattac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38315774 |
cggtggatttgttcctttgattcatgagcgatgagtttctcccacaattttgatttaagcttttgatctgtgggtttattgtgttttacactgaaattac |
38315675 |
T |
|
| Q |
101 |
ttgctaaaattgggttgttacattttcaggtcagttaatggtgttcttgcttaactgaaattgccagattgtgactaacaatggatactgaagcgcggaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38315674 |
ttgctaaaattgggttgttacattttcaggtcagttaatggtgttcttgcttaactgaaattgccagattgtgactaacaatggatactgaagcgcggaa |
38315575 |
T |
|
| Q |
201 |
aattctgcacgatgtaagtagactagaaacctccgcaactttaatgaactgtggtttagtttggttgctgtgacttttgcatattttacttatgatagtc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38315574 |
aattctgcacgatgtaagtagactagaaacctccgcaactttaatgaactgtggtttagtttggttgctgtgacttttgcatattttacttatgatagtc |
38315475 |
T |
|
| Q |
301 |
tagaaattggtactagtactttgtttgat |
329 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
38315474 |
tagaaattggtactagtactttgtttgat |
38315446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 160; Significance: 3e-85; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 22 - 279
Target Start/End: Complemental strand, 2631980 - 2631725
Alignment:
| Q |
22 |
tcatgagcgatgagtttctcccacaattttgatttaagcttttgatctgtgggtttattgtgttttacactgaaattacttgctaaaattgggttgttac |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| | |||||||||||| |||| ||||||||| |
|
|
| T |
2631980 |
tcatgagcgatgagtttctcccacaattttgatttaagctt--gatctgtgggtttgttgtgttttacacggtaattacttgctataatttggttgttac |
2631883 |
T |
|
| Q |
122 |
attttcaggtcagttaatggtgttcttgcttaactgaaattgccagattgtgactaacaatggatactgaagcgcggaaaattctgcacgatgtaagtag |
221 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2631882 |
cttttcaggtcagttaatggtgctcttgtttaactgaaattgccagattgtgactaccaatggatactgaagcgcggaaaattctgcacgatgtaag--- |
2631786 |
T |
|
| Q |
222 |
actagaaacctc-----cgcaactttaatgaactgtggtttagtttggttgctgtgacttttg |
279 |
Q |
| |
|
|||||||||| ||| ||||| |||||||||||||||||||||| || |||||||||| |
|
|
| T |
2631785 |
--tagaaacctcgatttcgcgacttttatgaactgtggtttagtttggtcgccgtgacttttg |
2631725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0103 (Bit Score: 156; Significance: 8e-83; HSPs: 1)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 22 - 279
Target Start/End: Original strand, 8032 - 8287
Alignment:
| Q |
22 |
tcatgagcgatgagtttctcccacaattttgatttaagcttttgatctgtgggtttattgtgttttacactgaaattacttgctaaaattgggttgttac |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| | |||||||||||| |||| ||||||||| |
|
|
| T |
8032 |
tcatgagcgatgagtttctcccacaattttgatttaagctt--gatctgtgggtttgttgtgttttacacggtaattacttgctataatttggttgttac |
8129 |
T |
|
| Q |
122 |
attttcaggtcagttaatggtgttcttgcttaactgaaattgccagattgtgactaacaatggatactgaagcgcggaaaattctgcacgatgtaagtag |
221 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
8130 |
cttttcaggtcagttaatggtgctcttgattaactgaaattgccagattgtgactaccaatggatactaaagcgcggaaaattctgcacgatgtaag--- |
8226 |
T |
|
| Q |
222 |
actagaaacctc-----cgcaactttaatgaactgtggtttagtttggttgctgtgacttttg |
279 |
Q |
| |
|
|||||||||| ||| ||||| |||||||||||||||||||||| || |||||||||| |
|
|
| T |
8227 |
--tagaaacctcgatttcgcgacttttatgaactgtggtttagtttggtcgccgtgacttttg |
8287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 89; Significance: 8e-43; HSPs: 2)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 45115 - 44970
Alignment:
| Q |
1 |
cggtggatttgttcctttgattcatgagcgatgagtttctcccacaattttgatttaagcttttgatctgtgggtttattgtgttttacactgaaattac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||| ||||| |
|
|
| T |
45115 |
cggtggatttgttcctttgattcatgagtgatgagtttctcccacaattttgatttaagc--ttgatatgtgggtttgttgtgttttacactctaattat |
45018 |
T |
|
| Q |
101 |
ttgctaaaattgggttgttacattttcaggtcagttaatggtgttctt |
148 |
Q |
| |
|
|||||| |||| ||| ||||| |||||| |||||||||||||| |||| |
|
|
| T |
45017 |
ttgctataatttggtagttaccttttcaagtcagttaatggtgctctt |
44970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 238 - 329
Target Start/End: Complemental strand, 44936 - 44845
Alignment:
| Q |
238 |
actttaatgaactgtggtttagtttggttgctgtgacttttgcatattttacttatgatagtctagaaattggtactagtactttgtttgat |
329 |
Q |
| |
|
||||| |||||||||||||||||||| | || ||||||||||||||||| |||||| ||||||| |||||||||| | ||| |||||||||| |
|
|
| T |
44936 |
acttttatgaactgtggtttagtttgatcgccgtgacttttgcatatttcacttatcatagtctggaaattggtatttgtattttgtttgat |
44845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University