View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10764_13 (Length: 349)
Name: NF10764_13
Description: NF10764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10764_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 13 - 343
Target Start/End: Original strand, 27312766 - 27313096
Alignment:
| Q |
13 |
tgaacacgacgacgcttaagcgtgcaaaaagttgtgtaagttttacgagaatgagcagtggcacgtgcggatataggtcaagaagttttggttgtggaag |
112 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
27312766 |
tgaacacgacgacacttaagcgtgcaaaaagttgtgtaagttttacgagaatgagcagtggcacgttcggatataggtcaagaagttttggttgtggaag |
27312865 |
T |
|
| Q |
113 |
tgggattggtcaagtgcagtacgaaaggtttggaagtgaagaagaagagaattatttagggtttcttaggaatagttggaataacaaatcggtgagaaaa |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27312866 |
tgggattggtcaagtgcagtacgaaaggtttggaagtgaggaagaagagaattacttagggtttcttaggaatagttggaataacaaatcggtgagaaaa |
27312965 |
T |
|
| Q |
213 |
tctcctatgaagtgtttgggagttgatatcgacaacgatgatgacgaacgatcctctgatcttttgtttcctgtgtagttaattgcaagagtggatcatt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
27312966 |
tctcctatgaagtgtttgggagttgatatcgacaacgatgatgacgaacgatcctctgatcttttgtttcctgtgtagttaattgcaagagtggatgatt |
27313065 |
T |
|
| Q |
313 |
gtcacatgttgaaatacttgttctactccat |
343 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
27313066 |
gtcacatgttgaaatacttgttctactccat |
27313096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University