View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10764_17 (Length: 307)
Name: NF10764_17
Description: NF10764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10764_17 |
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Alignment Details
Target: chr7 (Bit Score: 176; Significance: 8e-95; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 13 - 220
Target Start/End: Original strand, 33163234 - 33163441
Alignment:
| Q |
13 |
aatatagacaatattttgaaaaactatcaccacaaaaagactctcctctatctcctctacaaaacctacaaagaaaatcatgtgtcaaaataccttcgcc |
112 |
Q |
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|||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
33163234 |
aatatagacaatattttgaaaaactatcacaacaaaaagagtctcctctatctcctctacaaaacccacaaagaaaatcatgtgtccaaataccttcgcc |
33163333 |
T |
|
| Q |
113 |
ggcgaccaccatgccggaaattgaatccttcaccgttggtgtaacatttaaggtcaagttcttcacatcttaggtctctattcaccgcttttattttccc |
212 |
Q |
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|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
33163334 |
ggcgaccaccgtgccggaaattgaagccttcaccgttggtgtaacatttaaggtcaagttcttcacatcttcgatctctattcaccgcttttattttccc |
33163433 |
T |
|
| Q |
213 |
ttcatcag |
220 |
Q |
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|||||||| |
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| T |
33163434 |
ttcatcag |
33163441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 6e-34; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 20 - 149
Target Start/End: Complemental strand, 54762518 - 54762389
Alignment:
| Q |
20 |
acaatattttgaaaaactatcaccacaaaaagactctcctctatctcctctacaaaacctacaaagaaaatcatgtgtcaaaataccttcgccggcgacc |
119 |
Q |
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||||||||||||||||| ||||||| |||||||||||||| ||| ||||||||||||| |||||||||||||||| | |||||||||||||||| ||| |
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| T |
54762518 |
acaatattttgaaaaaccatcaccattaaaagactctcctcaatcccctctacaaaacccacaaagaaaatcatgtattgaaataccttcgccggcaacc |
54762419 |
T |
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| Q |
120 |
accatgccggaaattgaatccttcaccgtt |
149 |
Q |
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||| ||||||||| || ||||| ||||||| |
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| T |
54762418 |
accgtgccggaaaatgcatcctccaccgtt |
54762389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 54762355 - 54762314
Alignment:
| Q |
162 |
aaggtcaagttcttcacatcttaggtctctattcaccgcttt |
203 |
Q |
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||||| ||||||||||||||||| ||||||||||||| |||| |
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| T |
54762355 |
aaggtaaagttcttcacatcttatgtctctattcacctcttt |
54762314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 42374053 - 42374105
Alignment:
| Q |
26 |
ttttgaaaaactatcaccacaaaaagactctcctctatctcctctacaaaacc |
78 |
Q |
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||||||||| ||||||||| ||||||| || |||| |||| |||||||||||| |
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| T |
42374053 |
ttttgaaaatctatcaccataaaaagagtcccctccatcttctctacaaaacc |
42374105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 8e-27; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 20 - 149
Target Start/End: Complemental strand, 1075550 - 1075421
Alignment:
| Q |
20 |
acaatattttgaaaaactatcaccacaaaaagactctcctctatctcctctacaaaacctacaaagaaaatcatgtgtcaaaataccttcgccggcgacc |
119 |
Q |
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||||||||||||||||| ||||||| |||||||||||||| ||| ||||||||||||| ||||| |||||||||| | || ||||||||||||| ||| |
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| T |
1075550 |
acaatattttgaaaaaccatcaccattaaaagactctcctcaatcccctctacaaaacccacaaaaaaaatcatgtattgaagtaccttcgccggcaacc |
1075451 |
T |
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| Q |
120 |
accatgccggaaattgaatccttcaccgtt |
149 |
Q |
| |
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||| ||||||||| || | ||| ||||||| |
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| T |
1075450 |
accgtgccggaaaatgcaacctccaccgtt |
1075421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 219
Target Start/End: Complemental strand, 1075387 - 1075330
Alignment:
| Q |
162 |
aaggtcaagttcttcacatcttaggtctctattcaccgcttttattttcccttcatca |
219 |
Q |
| |
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||||| ||||| ||||||||||| ||||||||||||| |||||| |||| |||||||| |
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|
| T |
1075387 |
aaggtaaagttgttcacatcttatgtctctattcacctcttttactttctcttcatca |
1075330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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