View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10764_2 (Length: 496)
Name: NF10764_2
Description: NF10764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10764_2 |
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Alignment Details
Target: chr5 (Bit Score: 434; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 8 - 476
Target Start/End: Complemental strand, 4108599 - 4108130
Alignment:
| Q |
8 |
cgaagaaaattcttggaagaaaccagaaaatacattattgtagtcttcaacaagtataggaacagttccatcgg-atgtcgaagaatatggtgttgcaaa |
106 |
Q |
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| T |
4108599 |
cgaagaaaattcttggaagaaaccagaaaatacattattgtagtcttcaacaagtataggaacagttccattggcatgcgaaagaaaatggtgttgcaaa |
4108500 |
T |
|
| Q |
107 |
aagaaaggcactgacagaagcaaccaattttcaacagtcaaatgtcatggagattacagggaaatggcaattcccacataaacgtaaacctgactgtggg |
206 |
Q |
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| T |
4108499 |
aagaaaggcactgacagaagcaaccaattttcaacagtcaaatgtcatggagattacagggaaatggcaattcccacataaacgtaaacctgactgtggg |
4108400 |
T |
|
| Q |
207 |
cctgctttgaagcaacttaggcttgagagatgggttcataaggttggaaagatctctcctcagtgacaaacttcgctcatttcctaaatgctgtagcata |
306 |
Q |
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| T |
4108399 |
cctgctttgaagcaacttaggcttgagagatgggttcataaggttggaaagatctctcctcagtgacaaacttcgctcatttcctaaatgctgtggcata |
4108300 |
T |
|
| Q |
307 |
ttggttgtccatgaacgtaatagtactatagcataggaaatacaaaattgctgaaactttagaggtgtattacatagattatcttgtattactcatgcaa |
406 |
Q |
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| T |
4108299 |
ttggttgtccatgaacgtaatagtactatagcataggaaatacaaaattactgaaactttagaggtgtattacatagattatcttgtattactcatgcaa |
4108200 |
T |
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| Q |
407 |
tttggttgagagggttgtggtatggctgtttgtagaataatttttattactgataattacttaatttgat |
476 |
Q |
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| T |
4108199 |
tttggttgagagggttgtggtatggctgtttgtagaataatttttattactgataattacttaatttgat |
4108130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 12 - 451
Target Start/End: Complemental strand, 4131820 - 4131381
Alignment:
| Q |
12 |
gaaaattcttggaagaaaccagaaaatacattattgtagtcttcaacaagtataggaacagttccatcgg-atgtcgaagaatatggtgttgcaaaaaga |
110 |
Q |
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|||||||||||||||||||||||||| ||||||||| ||| ||||||||||| |||||||||||||| | |||| ||| | | ||||||||||| ||| |
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| T |
4131820 |
gaaaattcttggaagaaaccagaaaagacattattgcagtgttcaacaagtacaggaacagttccattgtcatgt-gaaaagaagggtgttgcaaagaga |
4131722 |
T |
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| Q |
111 |
aaggcactgacagaagcaaccaattttcaacagtcaaatgtcatggagattacagggaaatggcaattcccacataaacgtaaacctgactgtgggcctg |
210 |
Q |
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|||||| ||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||| | |||||| |||||||| ||||| ||||||||| |
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| T |
4131721 |
aaggcattgacagaagcaaccaatcttcaacagtccaatgtcatcgagattacagggaaatggcattgcccacagaaacgtaagcctgatcgtgggcctg |
4131622 |
T |
|
| Q |
211 |
ctttgaagcaacttaggcttgagagatgggttcataaggttggaaagatctctcctcagtgacaaacttcgctcatttcctaaatgctgtagcatattgg |
310 |
Q |
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||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||| ||||| | || |||||| |||||||| || ||||||||| |
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| T |
4131621 |
ctttgaagcaacttaggcttgagcgatgggttcaaaaggttggaaatatctctcctcattgacatagttggctcatgtcctaaattctatagcatattat |
4131522 |
T |
|
| Q |
311 |
ttgtccatgaacgtaatagtactatagca-taggaaatacaaaattgctgaaactttagaggtgtattacatagattatcttgtattactcatgcaattt |
409 |
Q |
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|||||||| ||||||||||||||||| || |||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||| |
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| T |
4131521 |
ttgtccattaacgtaatagtactataacattaggaaatacaaaattgctgaaacattcgaggtgtattacatagactatcttgtattactcatgcaattt |
4131422 |
T |
|
| Q |
410 |
ggttgagagggttgtggtatggctgtttgtagaataattttt |
451 |
Q |
| |
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|||| |||| | |||||||||| ||||||||||||||||||| |
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| T |
4131421 |
ggttcagagtg-tgtggtatggttgtttgtagaataattttt |
4131381 |
T |
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